Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99779 * 2 1 4 4 C 1.38236 * 119.99565 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00295 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99741 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.48848 * 339.96439 * 6 5 4 8 8 O 1.42898 * 109.47651 * 219.93905 * 6 5 4 9 9 C 1.42908 * 114.09877 * 178.85696 * 8 6 5 10 10 C 1.53096 * 109.41001 * 61.15818 * 9 8 6 11 11 C 1.53176 * 109.16307 * 302.39135 * 10 9 8 12 12 C 1.53092 * 109.48085 * 99.99918 * 6 5 4 13 13 H 1.08995 * 109.57277 * 297.52380 * 12 6 5 14 14 N 1.46898 * 109.52295 * 57.68389 * 12 6 5 15 15 C 1.46906 * 110.99888 * 204.68605 * 14 12 6 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99892 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00241 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47135 * 90.00125 * 20 18 16 22 22 H 1.48503 * 109.47215 * 210.00315 * 20 18 16 23 23 H 1.48508 * 109.46958 * 330.00276 * 20 18 16 24 24 C 1.38229 * 120.00096 * 0.24902 * 5 4 3 25 25 C 1.38232 * 120.00149 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47273 * 90.00093 * 1 2 3 27 27 H 1.09009 * 109.46713 * 209.99700 * 1 2 3 28 28 H 1.08992 * 109.47406 * 329.99805 * 1 2 3 29 29 H 1.07997 * 120.00139 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.99500 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47983 * 301.17648 * 9 8 6 32 32 H 1.09000 * 109.49212 * 181.14266 * 9 8 6 33 33 H 1.09005 * 109.51999 * 182.48438 * 10 9 8 34 34 H 1.08998 * 109.57646 * 62.33318 * 10 9 8 35 35 H 1.09003 * 109.54205 * 297.11305 * 11 10 9 36 36 H 1.09004 * 109.54316 * 176.84778 * 11 10 9 37 37 H 1.00901 * 111.00121 * 80.73192 * 14 12 6 38 38 H 1.09004 * 109.47040 * 299.99934 * 15 14 12 39 39 H 1.09000 * 109.47033 * 59.99886 * 15 14 12 40 40 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.00382 * 179.72821 * 24 5 4 42 42 H 1.08003 * 120.00176 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 1 6.1423 0.9655 -0.3515 8 8 6.2552 -1.0328 -0.8643 9 6 7.6794 -1.1044 -0.9583 10 6 8.2663 -1.3993 0.4246 11 6 7.8198 -0.3088 1.4033 12 6 6.2893 -0.2504 1.4219 13 1 5.9636 0.5592 2.0749 14 7 5.7553 -1.5260 1.9176 15 6 5.7091 -1.5423 3.3858 16 6 5.1567 -2.8631 3.8563 17 1 4.8683 -3.6150 3.1367 18 6 5.0184 -3.1112 5.2055 19 7 4.5368 -4.2640 5.6162 20 14 5.5165 -1.8104 6.4503 21 1 4.3531 -0.9358 6.7448 22 1 5.9693 -2.4701 7.7014 23 1 6.6234 -0.9912 5.8941 24 6 3.5806 -1.1971 -0.0052 25 6 2.1982 -1.1971 -0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 8.0679 -0.1534 -1.3228 32 1 7.9588 -1.9000 -1.6489 33 1 9.3546 -1.4106 0.3635 34 1 7.9111 -2.3691 0.7729 35 1 8.2177 0.6540 1.0827 36 1 8.1879 -0.5425 2.4023 37 1 6.2914 -2.3043 1.5640 38 1 6.7153 -1.4069 3.7825 39 1 5.0678 -0.7344 3.7382 40 1 4.4391 -4.4384 6.5654 41 1 4.1206 -2.1324 -0.0096 42 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583138761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = -28.129598 kcal Electronic energy + Delta-G solvation = -21902.673115 eV Core-core repulsion = 18846.979555 eV Total energy + Delta-G solvation = -3055.693559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96551 -38.40499 -35.34997 -33.35802 -32.80087 -31.53558 -30.43902 -29.78214 -26.99472 -26.11209 -24.19125 -22.93528 -22.21946 -21.36286 -20.36943 -19.18158 -16.93845 -16.52782 -16.02086 -15.56050 -14.87163 -14.73585 -14.40503 -14.27065 -14.12893 -13.69177 -13.48652 -13.15377 -12.93980 -12.55302 -12.52211 -12.28086 -12.10015 -11.94168 -11.71064 -11.49498 -11.10165 -11.02667 -10.68290 -10.57573 -10.48179 -10.28113 -10.15264 -9.90201 -9.40671 -9.15846 -8.57398 -8.43103 -8.05206 -7.34519 -6.04262 -4.01328 1.72314 1.91806 3.28812 3.35776 3.37476 3.89504 4.25657 4.42801 4.87342 4.92584 5.02635 5.09737 5.16571 5.21133 5.28272 5.32321 5.36304 5.44925 5.51508 5.56341 5.67569 5.74442 5.75874 5.83560 5.90210 5.99614 6.03868 6.11353 6.20257 6.26723 6.35742 6.45402 6.57213 6.80822 6.83302 7.03738 7.06256 7.09460 7.46419 7.50544 7.63795 7.93119 8.39557 8.67496 9.04524 9.58270 11.09110 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.007202 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.288630 B = 3886.611379 C = 5444.944470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.070 4.070 6 C 0.146 3.854 7 H 0.057 0.943 8 O -0.368 6.368 9 C 0.064 3.936 10 C -0.157 4.157 11 C -0.153 4.153 12 C 0.059 3.941 13 H 0.079 0.921 14 N -0.659 5.659 15 C 0.166 3.834 16 C -0.510 4.510 17 H 0.079 0.921 18 C 0.069 3.931 19 N -0.901 5.901 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.269 1.269 24 C -0.041 4.041 25 C -0.127 4.127 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.338 0.662 38 H -0.018 1.018 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.132 0.868 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 10.775 -13.388 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.134 4.134 5 C -0.070 4.070 6 C 0.088 3.912 7 H 0.075 0.925 8 O -0.287 6.287 9 C -0.013 4.013 10 C -0.195 4.195 11 C -0.193 4.193 12 C -0.053 4.053 13 H 0.097 0.903 14 N -0.291 5.291 15 C 0.038 3.962 16 C -0.549 4.549 17 H 0.097 0.903 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.703 3.297 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.194 1.194 24 C -0.059 4.059 25 C -0.145 4.145 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.158 0.842 38 H -0.001 1.001 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.694 10.725 -13.372 17.156 hybrid contribution 1.484 0.744 1.418 2.183 sum 2.178 11.469 -11.954 16.709 Atomic orbital electron populations 1.20753 0.91871 1.02526 1.01654 1.19844 0.95613 0.93429 1.00226 1.20749 0.93826 0.97088 1.03488 1.20794 0.94217 0.96875 1.01506 1.19286 0.93055 0.93515 1.01133 1.20891 0.91047 0.89733 0.89532 0.92524 1.87960 1.20171 1.54816 1.65718 1.22506 0.81639 1.00776 0.96352 1.22175 1.00646 1.00470 0.96224 1.22291 0.98077 0.98697 1.00211 1.22135 0.91344 0.96091 0.95695 0.90280 1.60515 1.55959 1.01436 1.11161 1.20011 0.94302 0.98196 0.83704 1.21035 1.41763 0.99489 0.92596 0.90313 1.24885 0.94894 0.95227 0.98258 1.69899 1.46034 1.22838 1.15210 0.86860 0.79376 0.82280 0.81189 1.20222 1.21291 1.19386 1.20958 0.93086 0.98449 0.93455 1.21067 0.94613 0.97186 1.01612 0.91738 0.91617 0.92025 0.86838 0.86933 0.93797 0.89073 0.91263 0.90390 0.92179 0.91201 0.84223 1.00086 0.96268 0.92736 0.84986 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 36.01 0.36 -0.93 16 2 C -0.09 -1.34 5.88 -104.62 -0.62 -1.96 16 3 C -0.13 -1.89 9.70 -39.58 -0.38 -2.28 16 4 C -0.12 -1.71 9.67 -39.58 -0.38 -2.09 16 5 C -0.07 -1.14 4.86 -104.63 -0.51 -1.65 16 6 C 0.15 2.22 2.66 -27.83 -0.07 2.15 16 7 H 0.06 0.76 8.01 -51.93 -0.42 0.34 16 8 O -0.37 -5.62 9.62 -35.23 -0.34 -5.96 16 9 C 0.06 0.78 6.84 37.21 0.25 1.03 16 10 C -0.16 -2.02 5.85 -26.59 -0.16 -2.18 16 11 C -0.15 -2.20 5.61 -26.55 -0.15 -2.35 16 12 C 0.06 0.99 2.35 -67.58 -0.16 0.83 16 13 H 0.08 1.38 7.80 -51.93 -0.41 0.97 16 14 N -0.66 -13.39 4.53 -107.84 -0.49 -13.88 16 15 C 0.17 4.01 4.31 -4.97 -0.02 3.99 16 16 C -0.51 -14.60 9.87 -34.44 -0.34 -14.94 16 17 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 20 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 24 C -0.04 -0.73 8.35 -39.58 -0.33 -1.06 16 25 C -0.13 -2.07 9.70 -39.58 -0.38 -2.46 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.75 8.09 -51.92 -0.42 0.33 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.38 8.04 -52.48 -0.42 0.96 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.14 6.45 -51.93 -0.34 0.81 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.11 7.40 -51.93 -0.38 0.72 16 37 H 0.34 6.85 6.46 -39.29 -0.25 6.60 16 38 H -0.02 -0.45 6.46 -51.93 -0.34 -0.78 16 39 H 0.02 0.48 7.48 -51.93 -0.39 0.10 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.13 2.48 7.45 -52.49 -0.39 2.09 16 42 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -31.12 332.39 -9.42 -40.54 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.72 Total: 6.14 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -2.99 Total: -21.98 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.28 Total: -40.95 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.34 Total: -5.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.12 -9.42 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583138761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.414 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds