Wall clock time and date at job start Mon Mar 30 2020 02:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 120.00451 * 2 1 4 4 C 1.38234 * 120.00456 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99505 * 359.97165 * 4 3 2 6 6 C 1.50704 * 119.99954 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.48970 * 25.02777 * 6 5 4 8 8 O 1.42899 * 109.48300 * 145.05832 * 6 5 4 9 9 C 1.42901 * 114.09907 * 181.14051 * 8 6 5 10 10 C 1.53094 * 109.41504 * 298.84571 * 9 8 6 11 11 C 1.53177 * 109.16506 * 57.60808 * 10 9 8 12 12 C 1.53094 * 109.47876 * 265.00456 * 6 5 4 13 13 H 1.08996 * 109.57701 * 62.46822 * 12 6 5 14 14 N 1.46901 * 109.52221 * 302.30839 * 12 6 5 15 15 C 1.46895 * 110.99820 * 155.31610 * 14 12 6 16 16 C 1.50706 * 109.47182 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47483 * 269.99808 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00322 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00145 * 20 18 16 24 24 C 1.38233 * 120.00574 * 0.28271 * 5 4 3 25 25 C 1.38234 * 119.99795 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47061 * 90.00013 * 1 2 3 27 27 H 1.08997 * 109.47087 * 210.00208 * 1 2 3 28 28 H 1.09001 * 109.46505 * 329.99775 * 1 2 3 29 29 H 1.08001 * 119.99716 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00433 * 180.02562 * 4 3 2 31 31 H 1.08994 * 109.48170 * 178.86030 * 9 8 6 32 32 H 1.09004 * 109.47894 * 58.82324 * 9 8 6 33 33 H 1.09001 * 109.52063 * 297.69923 * 10 9 8 34 34 H 1.09005 * 109.52161 * 177.51330 * 10 9 8 35 35 H 1.08997 * 109.54126 * 183.15465 * 11 10 9 36 36 H 1.08996 * 109.54660 * 62.88428 * 11 10 9 37 37 H 1.00902 * 111.00171 * 279.27223 * 14 12 6 38 38 H 1.09001 * 109.47613 * 60.00522 * 15 14 12 39 39 H 1.09006 * 109.47521 * 300.00140 * 15 14 12 40 40 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 41 41 H 1.07999 * 120.00598 * 179.72952 * 24 5 4 42 42 H 1.08010 * 120.00019 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0017 6 6 5.7787 -0.0003 0.0028 7 1 6.1421 0.9310 0.4374 8 8 6.2546 -1.1042 0.7753 9 6 7.6787 -1.1838 0.8637 10 6 8.2667 -1.3577 -0.5391 11 6 7.8209 -0.1866 -1.4200 12 6 6.2903 -0.1267 -1.4345 13 1 5.9651 0.7365 -2.0152 14 7 5.7567 -1.3545 -2.0393 15 6 5.7116 -1.2435 -3.5034 16 6 5.1596 -2.5186 -4.0871 17 1 4.8707 -3.3300 -3.4354 18 6 5.0233 -2.6492 -5.4528 19 7 5.3756 -1.6613 -6.2463 20 14 4.3397 -4.2300 -6.1762 21 1 5.4543 -5.1731 -6.4471 22 1 3.3927 -4.8464 -5.2126 23 1 3.6284 -3.9270 -7.4442 24 6 3.5805 -1.1973 -0.0037 25 6 2.1981 -1.1972 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 1.6583 2.1324 -0.0004 30 1 4.1207 2.1323 0.0010 31 1 7.9574 -2.0363 1.4829 32 1 8.0669 -0.2680 1.3095 33 1 7.9106 -2.2936 -0.9698 34 1 9.3549 -1.3743 -0.4785 35 1 8.1897 -0.3329 -2.4352 36 1 8.2184 0.7448 -1.0170 37 1 6.2925 -2.1605 -1.7541 38 1 6.7181 -1.0743 -3.8862 39 1 5.0706 -0.4081 -3.7850 40 1 5.7309 -0.8407 -5.8706 41 1 4.1205 -2.1326 -0.0072 42 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583138762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:54 Heat of formation + Delta-G solvation = -36.398599 kcal Electronic energy + Delta-G solvation = -21888.734101 eV Core-core repulsion = 18832.681970 eV Total energy + Delta-G solvation = -3056.052130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96330 -38.41987 -35.36677 -33.37163 -33.07646 -31.41791 -30.46672 -29.51230 -26.76066 -25.40858 -24.16121 -22.94175 -22.32474 -21.88548 -20.42753 -19.14002 -17.11215 -16.50177 -16.06262 -15.38385 -14.85412 -14.72798 -14.48305 -14.25249 -13.85039 -13.66995 -13.46447 -13.20293 -12.96680 -12.62253 -12.54182 -12.23214 -12.03124 -11.79102 -11.64806 -11.21866 -11.12047 -10.93985 -10.74162 -10.61696 -10.46418 -10.33681 -10.12352 -10.07952 -9.38905 -8.59670 -8.45544 -8.38429 -8.04833 -7.28472 -6.35217 -4.03366 1.71392 1.89364 3.44460 3.49339 3.65109 3.88589 4.22126 4.54516 4.87842 4.96242 5.02900 5.09317 5.16697 5.18729 5.33553 5.35143 5.41767 5.42844 5.50480 5.57235 5.67974 5.73866 5.76573 5.83837 5.88427 5.97189 6.03931 6.12956 6.17165 6.28708 6.36513 6.43866 6.54071 6.81246 6.98004 7.00026 7.05593 7.19902 7.43981 7.49559 7.82463 8.20497 8.51502 8.61863 8.90075 9.68058 11.04610 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.007010 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.531914 B = 3993.077989 C = 5669.001481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.065 4.065 6 C 0.146 3.854 7 H 0.057 0.943 8 O -0.369 6.369 9 C 0.065 3.935 10 C -0.156 4.156 11 C -0.153 4.153 12 C 0.061 3.939 13 H 0.078 0.922 14 N -0.661 5.661 15 C 0.186 3.814 16 C -0.590 4.590 17 H 0.055 0.945 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 1.074 2.926 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.285 1.285 24 C -0.046 4.046 25 C -0.128 4.128 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.333 0.667 38 H -0.027 1.027 39 H 0.015 0.985 40 H 0.266 0.734 41 H 0.129 0.871 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 4.573 15.251 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.065 4.065 6 C 0.087 3.913 7 H 0.075 0.925 8 O -0.288 6.288 9 C -0.012 4.012 10 C -0.194 4.194 11 C -0.192 4.192 12 C -0.051 4.051 13 H 0.096 0.904 14 N -0.292 5.292 15 C 0.059 3.941 16 C -0.628 4.628 17 H 0.073 0.927 18 C -0.189 4.189 19 N -0.552 5.552 20 Si 0.902 3.098 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.211 1.211 24 C -0.064 4.064 25 C -0.146 4.146 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.153 0.847 38 H -0.009 1.009 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.728 3.868 13.982 14.609 hybrid contribution 1.730 0.982 0.836 2.158 sum 0.002 4.850 14.818 15.591 Atomic orbital electron populations 1.20749 0.91833 1.02057 1.02118 1.19829 0.95618 0.93411 1.00320 1.20755 0.93816 0.97128 1.03205 1.20784 0.94236 0.96909 1.01418 1.19282 0.93073 0.93527 1.00639 1.20904 0.91047 0.88572 0.90741 0.92516 1.87936 1.20215 1.49069 1.71542 1.22504 0.81616 1.01091 0.96035 1.22167 1.00606 1.00066 0.96588 1.22280 0.98137 0.98119 1.00659 1.22116 0.91283 0.96700 0.94992 0.90399 1.60586 1.55718 1.01856 1.11062 1.19658 0.93902 0.98032 0.82463 1.22002 1.45892 1.00948 0.93992 0.92650 1.25820 0.95722 1.03590 0.93797 1.70766 1.40692 1.05647 1.38137 0.83477 0.76360 0.74297 0.75653 1.21592 1.21369 1.21062 1.20881 0.93094 0.98318 0.94113 1.21029 0.94532 0.97147 1.01856 0.91370 0.91891 0.92100 0.86756 0.86870 0.89100 0.93757 0.90565 0.91269 0.91218 0.92225 0.84739 1.00912 0.96667 0.92351 0.85331 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 36.01 0.36 -0.93 16 2 C -0.09 -1.37 5.88 -104.62 -0.62 -1.99 16 3 C -0.13 -1.91 9.70 -39.58 -0.38 -2.30 16 4 C -0.12 -1.77 9.68 -39.58 -0.38 -2.15 16 5 C -0.07 -1.10 4.81 -104.62 -0.50 -1.60 16 6 C 0.15 2.31 2.64 -27.83 -0.07 2.23 16 7 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 8 O -0.37 -5.78 9.47 -35.23 -0.33 -6.12 16 9 C 0.06 0.81 6.84 37.21 0.25 1.06 16 10 C -0.16 -2.11 5.85 -26.59 -0.16 -2.27 16 11 C -0.15 -2.33 5.61 -26.55 -0.15 -2.48 16 12 C 0.06 1.08 2.35 -67.57 -0.16 0.92 16 13 H 0.08 1.47 7.80 -51.93 -0.41 1.06 16 14 N -0.66 -14.11 4.93 -107.84 -0.53 -14.64 16 15 C 0.19 4.86 4.55 -4.98 -0.02 4.84 16 16 C -0.59 -17.00 9.32 -34.44 -0.32 -17.32 16 17 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 18 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 19 N -0.92 -28.36 13.65 55.43 0.76 -27.60 16 20 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.05 -0.82 8.48 -39.58 -0.34 -1.15 16 25 C -0.13 -2.08 9.70 -39.58 -0.38 -2.47 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.17 6.45 -51.93 -0.33 0.83 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.20 7.40 -51.93 -0.38 0.81 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.33 7.06 6.46 -39.29 -0.25 6.81 16 38 H -0.03 -0.72 7.26 -51.93 -0.38 -1.10 16 39 H 0.02 0.43 7.92 -51.93 -0.41 0.02 16 40 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 41 H 0.13 2.40 7.60 -52.49 -0.40 2.00 16 42 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -31.55 335.21 -9.82 -41.37 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.71 Total: 6.47 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -2.97 Total: -25.29 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.22 Total: -42.24 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.33 Total: -6.12 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.55 -9.82 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583138762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.968 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds