Wall clock time and date at job start Mon Mar 30 2020 02:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 120.00451 * 2 1 4 4 C 1.38234 * 120.00456 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99505 * 359.97165 * 4 3 2 6 6 C 1.50704 * 119.99954 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.48970 * 25.02777 * 6 5 4 8 8 O 1.42899 * 109.48300 * 145.05832 * 6 5 4 9 9 C 1.42901 * 114.09907 * 181.14051 * 8 6 5 10 10 C 1.53094 * 109.41504 * 298.84571 * 9 8 6 11 11 C 1.53177 * 109.16506 * 57.60808 * 10 9 8 12 12 C 1.53094 * 109.47876 * 265.00456 * 6 5 4 13 13 H 1.08996 * 109.57701 * 62.46822 * 12 6 5 14 14 N 1.46901 * 109.52221 * 302.30839 * 12 6 5 15 15 C 1.46895 * 110.99820 * 155.31610 * 14 12 6 16 16 C 1.50706 * 109.47182 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47483 * 269.99808 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00322 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00145 * 20 18 16 24 24 C 1.38233 * 120.00574 * 0.28271 * 5 4 3 25 25 C 1.38234 * 119.99795 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47061 * 90.00013 * 1 2 3 27 27 H 1.08997 * 109.47087 * 210.00208 * 1 2 3 28 28 H 1.09001 * 109.46505 * 329.99775 * 1 2 3 29 29 H 1.08001 * 119.99716 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00433 * 180.02562 * 4 3 2 31 31 H 1.08994 * 109.48170 * 178.86030 * 9 8 6 32 32 H 1.09004 * 109.47894 * 58.82324 * 9 8 6 33 33 H 1.09001 * 109.52063 * 297.69923 * 10 9 8 34 34 H 1.09005 * 109.52161 * 177.51330 * 10 9 8 35 35 H 1.08997 * 109.54126 * 183.15465 * 11 10 9 36 36 H 1.08996 * 109.54660 * 62.88428 * 11 10 9 37 37 H 1.00902 * 111.00171 * 279.27223 * 14 12 6 38 38 H 1.09001 * 109.47613 * 60.00522 * 15 14 12 39 39 H 1.09006 * 109.47521 * 300.00140 * 15 14 12 40 40 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 41 41 H 1.07999 * 120.00598 * 179.72952 * 24 5 4 42 42 H 1.08010 * 120.00019 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0017 6 6 5.7787 -0.0003 0.0028 7 1 6.1421 0.9310 0.4374 8 8 6.2546 -1.1042 0.7753 9 6 7.6787 -1.1838 0.8637 10 6 8.2667 -1.3577 -0.5391 11 6 7.8209 -0.1866 -1.4200 12 6 6.2903 -0.1267 -1.4345 13 1 5.9651 0.7365 -2.0152 14 7 5.7567 -1.3545 -2.0393 15 6 5.7116 -1.2435 -3.5034 16 6 5.1596 -2.5186 -4.0871 17 1 4.8707 -3.3300 -3.4354 18 6 5.0233 -2.6492 -5.4528 19 7 5.3756 -1.6613 -6.2463 20 14 4.3397 -4.2300 -6.1762 21 1 5.4543 -5.1731 -6.4471 22 1 3.3927 -4.8464 -5.2126 23 1 3.6284 -3.9270 -7.4442 24 6 3.5805 -1.1973 -0.0037 25 6 2.1981 -1.1972 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 1.6583 2.1324 -0.0004 30 1 4.1207 2.1323 0.0010 31 1 7.9574 -2.0363 1.4829 32 1 8.0669 -0.2680 1.3095 33 1 7.9106 -2.2936 -0.9698 34 1 9.3549 -1.3743 -0.4785 35 1 8.1897 -0.3329 -2.4352 36 1 8.2184 0.7448 -1.0170 37 1 6.2925 -2.1605 -1.7541 38 1 6.7181 -1.0743 -3.8862 39 1 5.0706 -0.4081 -3.7850 40 1 5.7309 -0.8407 -5.8706 41 1 4.1205 -2.1326 -0.0072 42 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583138762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:54 Heat of formation + Delta-G solvation = -55.127844 kcal Electronic energy + Delta-G solvation = -21889.546262 eV Core-core repulsion = 18832.681970 eV Total energy + Delta-G solvation = -3056.864291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21777 -39.61146 -37.02664 -35.03610 -34.50019 -32.88194 -31.67684 -30.93071 -28.05641 -27.24730 -25.41484 -24.23760 -24.12090 -23.29816 -21.62726 -20.47071 -19.15526 -17.77456 -17.34605 -16.75905 -16.20374 -16.00146 -15.90920 -15.67852 -15.41748 -15.16977 -14.65148 -14.51664 -14.34823 -14.16046 -14.01373 -13.75016 -13.26435 -13.12402 -12.95796 -12.77709 -12.57221 -12.49350 -12.26527 -12.13084 -11.95293 -11.73543 -11.59414 -11.29952 -10.90535 -10.63197 -10.47012 -9.69226 -9.28320 -9.03233 -8.72050 -6.42077 0.50519 0.66637 1.49596 1.59318 1.77777 2.52731 2.73831 3.00990 3.12147 3.46219 3.68725 3.87294 3.91706 4.01328 4.04392 4.11546 4.21739 4.28478 4.36736 4.43284 4.49953 4.62451 4.65243 4.71368 4.76280 4.83735 4.86130 4.90407 4.97206 5.01661 5.04170 5.14065 5.18192 5.29434 5.36901 5.60865 5.73393 5.80245 5.82204 6.01273 6.24497 6.33624 6.41224 6.57680 6.71680 7.39543 8.67337 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.007010 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.531914 B = 3993.077989 C = 5669.001481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.123 4.123 5 C -0.087 4.087 6 C 0.155 3.845 7 H 0.084 0.916 8 O -0.386 6.386 9 C 0.061 3.939 10 C -0.152 4.152 11 C -0.148 4.148 12 C 0.057 3.943 13 H 0.060 0.940 14 N -0.658 5.658 15 C 0.204 3.796 16 C -0.604 4.604 17 H 0.051 0.949 18 C -0.036 4.036 19 N -0.937 5.937 20 Si 1.122 2.878 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.282 1.282 24 C -0.070 4.070 25 C -0.147 4.147 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.334 0.666 38 H -0.046 1.046 39 H -0.014 1.014 40 H 0.252 0.748 41 H 0.108 0.892 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 4.875 16.704 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.153 4.153 4 C -0.141 4.141 5 C -0.087 4.087 6 C 0.097 3.903 7 H 0.101 0.899 8 O -0.305 6.305 9 C -0.015 4.015 10 C -0.190 4.190 11 C -0.187 4.187 12 C -0.054 4.054 13 H 0.079 0.921 14 N -0.289 5.289 15 C 0.076 3.924 16 C -0.642 4.642 17 H 0.069 0.931 18 C -0.234 4.234 19 N -0.575 5.575 20 Si 0.943 3.057 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.207 1.207 24 C -0.088 4.088 25 C -0.165 4.165 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.153 0.847 38 H -0.028 1.028 39 H 0.004 0.996 40 H 0.062 0.938 41 H 0.126 0.874 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.939 4.183 15.473 16.145 hybrid contribution 1.814 0.946 0.444 2.094 sum -0.125 5.130 15.917 16.724 Atomic orbital electron populations 1.20796 0.89422 1.03706 1.02586 1.20247 0.97513 0.92954 0.99125 1.21179 0.93854 0.98258 1.02030 1.21138 0.94945 0.97284 1.00696 1.19539 0.93887 0.93869 1.01374 1.20814 0.90611 0.89782 0.89142 0.89862 1.87936 1.22208 1.49178 1.71179 1.22741 0.79953 1.03270 0.95520 1.22155 1.02267 0.97822 0.96737 1.22211 0.96060 1.00537 0.99908 1.22217 0.93186 0.94028 0.95980 0.92143 1.60461 1.56797 1.03676 1.07964 1.19268 0.91834 0.95865 0.85433 1.22341 1.45724 1.01693 0.94433 0.93065 1.27406 0.95224 1.06043 0.94696 1.70900 1.42274 1.05891 1.38403 0.82871 0.76643 0.70869 0.75296 1.19550 1.19682 1.20723 1.20866 0.93911 0.98063 0.95982 1.21256 0.94301 0.98417 1.02480 0.91316 0.90875 0.89934 0.83900 0.84540 0.87132 0.91231 0.93042 0.88594 0.93884 0.89234 0.84680 1.02842 0.99596 0.93841 0.87361 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.24 0.71 -1.59 16 2 C -0.10 -2.83 5.88 -19.87 -0.12 -2.95 16 3 C -0.14 -3.72 9.70 22.27 0.22 -3.51 16 4 C -0.12 -3.61 9.68 22.27 0.22 -3.39 16 5 C -0.09 -2.91 4.81 -19.87 -0.10 -3.01 16 6 C 0.15 4.76 2.64 29.88 0.08 4.84 16 7 H 0.08 2.13 8.05 -2.38 -0.02 2.11 16 8 O -0.39 -11.69 9.47 -148.98 -1.41 -13.10 16 9 C 0.06 1.39 6.84 72.01 0.49 1.88 16 10 C -0.15 -3.90 5.85 30.68 0.18 -3.72 16 11 C -0.15 -4.44 5.61 30.71 0.17 -4.27 16 12 C 0.06 2.04 2.35 45.01 0.11 2.15 16 13 H 0.06 2.35 7.80 -2.39 -0.02 2.33 16 14 N -0.66 -29.15 4.93 -495.09 -2.44 -31.60 16 15 C 0.20 11.17 4.55 85.56 0.39 11.56 16 16 C -0.60 -35.79 9.32 25.60 0.24 -35.55 16 17 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 18 C -0.04 -2.17 5.46 84.65 0.46 -1.70 16 19 N -0.94 -59.43 13.65 21.45 0.29 -59.14 16 20 Si 1.12 51.92 29.90 68.60 2.05 53.97 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C -0.07 -2.55 8.48 22.27 0.19 -2.36 16 25 C -0.15 -4.83 9.70 22.27 0.22 -4.61 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 28 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 30 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.58 6.45 -2.39 -0.02 1.56 16 34 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.04 1.51 7.40 -2.39 -0.02 1.49 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.33 14.69 6.46 -89.69 -0.58 14.11 16 38 H -0.05 -2.64 7.26 -2.39 -0.02 -2.66 16 39 H -0.01 -0.84 7.92 -2.38 -0.02 -0.86 16 40 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 41 H 0.11 4.26 7.60 -2.91 -0.02 4.23 16 42 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -70.28 335.21 2.46 -67.82 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.51 Total: 28.28 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.46 Total: -46.24 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.15 Total: -90.73 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.41 Total: -13.10 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.97 kcal Total: -70.28 2.46 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583138762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.691 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds