Wall clock time and date at job start Mon Mar 30 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 119.99886 * 2 1 4 4 C 1.38243 * 120.00069 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.09581 * 4 3 2 6 6 C 1.50701 * 119.99808 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.48141 * 24.97575 * 6 5 4 8 8 O 1.42897 * 109.48164 * 144.99963 * 6 5 4 9 9 C 1.42896 * 114.09972 * 181.14273 * 8 6 5 10 10 C 1.53090 * 109.41698 * 298.84410 * 9 8 6 11 11 C 1.53174 * 109.16227 * 57.60357 * 10 9 8 12 12 C 1.53090 * 109.48084 * 264.94628 * 6 5 4 13 13 H 1.09007 * 109.52144 * 302.30916 * 12 6 5 14 14 N 1.46895 * 109.52644 * 62.50284 * 12 6 5 15 15 C 1.46901 * 110.99957 * 205.00056 * 14 12 6 16 16 C 1.50698 * 109.46986 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00270 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00014 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99943 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47432 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47439 * 120.00013 * 20 18 16 23 23 H 1.48507 * 109.46814 * 239.99691 * 20 18 16 24 24 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 25 25 C 1.38234 * 120.00242 * 180.08946 * 2 1 3 26 26 H 1.08997 * 109.47341 * 269.91120 * 1 2 3 27 27 H 1.09007 * 109.47270 * 29.90821 * 1 2 3 28 28 H 1.09000 * 109.46792 * 149.90515 * 1 2 3 29 29 H 1.08001 * 120.00365 * 0.06714 * 3 2 1 30 30 H 1.08000 * 119.99728 * 180.36512 * 4 3 2 31 31 H 1.09005 * 109.48392 * 58.82617 * 9 8 6 32 32 H 1.09006 * 109.48523 * 178.85926 * 9 8 6 33 33 H 1.08996 * 109.52806 * 177.51888 * 10 9 8 34 34 H 1.09012 * 109.51950 * 297.63957 * 10 9 8 35 35 H 1.09004 * 109.54435 * 62.89717 * 11 10 9 36 36 H 1.09000 * 109.54072 * 183.06708 * 11 10 9 37 37 H 1.00903 * 111.00228 * 328.95371 * 14 12 6 38 38 H 1.08995 * 109.47226 * 299.99758 * 15 14 12 39 39 H 1.08996 * 109.46975 * 60.00149 * 15 14 12 40 40 H 0.97000 * 120.00595 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.00371 * 179.97438 * 24 5 4 42 42 H 1.08000 * 119.99729 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0009 7 1 6.1422 0.9310 0.4341 8 8 6.2553 -1.1045 0.7704 9 6 7.6794 -1.1840 0.8577 10 6 8.2664 -1.3570 -0.5456 11 6 7.8198 -0.1853 -1.4253 12 6 6.2893 -0.1254 -1.4387 13 1 5.8930 -1.0362 -1.8878 14 7 5.8504 1.0393 -2.2189 15 6 5.7799 0.7177 -3.6506 16 6 5.3267 1.9337 -4.4168 17 1 5.1120 2.8533 -3.8926 18 6 5.1850 1.8719 -5.7869 19 7 5.4459 0.7520 -6.4251 20 14 4.6239 3.3793 -6.7368 21 1 4.3979 4.5033 -5.7930 22 1 5.6681 3.7612 -7.7211 23 1 3.3589 3.0715 -7.4513 24 6 3.5806 -1.1971 -0.0024 25 6 2.1982 -1.1971 -0.0019 26 1 -0.3634 -0.0016 1.0276 27 1 -0.3634 0.8908 -0.5124 28 1 -0.3633 -0.8891 -0.5153 29 1 1.6582 2.1325 0.0011 30 1 4.1205 2.1325 0.0065 31 1 8.0679 -0.2685 1.3039 32 1 7.9587 -2.0370 1.4762 33 1 9.3545 -1.3736 -0.4858 34 1 7.9109 -2.2932 -0.9763 35 1 8.2177 0.7460 -1.0220 36 1 8.1892 -0.3301 -2.4406 37 1 4.9650 1.3872 -1.8824 38 1 6.7648 0.4120 -4.0032 39 1 5.0700 -0.0946 -3.8059 40 1 5.3466 0.7086 -7.3891 41 1 4.1205 -2.1325 -0.0040 42 1 1.6582 -2.1324 -0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583138763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:58 Heat of formation + Delta-G solvation = -36.987441 kcal Electronic energy + Delta-G solvation = -21643.083750 eV Core-core repulsion = 18587.006086 eV Total energy + Delta-G solvation = -3056.077664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01625 -38.44801 -35.41143 -33.49061 -32.86618 -31.62331 -30.72268 -29.48833 -26.90252 -25.98242 -24.10897 -22.65833 -22.48972 -21.33636 -20.59695 -19.62582 -16.76076 -16.54383 -16.02378 -15.35075 -14.96061 -14.76288 -14.48317 -14.27357 -14.22274 -14.01649 -13.61932 -13.19969 -12.88741 -12.54865 -12.37087 -12.27289 -12.13372 -11.86988 -11.56175 -11.35073 -11.05708 -10.91459 -10.79397 -10.75725 -10.52242 -10.46580 -10.20963 -9.92655 -9.26391 -9.11952 -8.68233 -8.47676 -8.26217 -7.31236 -6.01970 -4.03591 1.49056 1.64093 3.31239 3.38298 3.43316 3.77193 4.00139 4.44002 4.87220 4.99700 5.00173 5.09804 5.11653 5.19582 5.24622 5.31440 5.34178 5.38203 5.43962 5.58490 5.61387 5.67791 5.71996 5.85914 5.90409 5.94555 6.05634 6.16725 6.22443 6.26954 6.31676 6.53042 6.61681 6.68421 6.77298 6.79956 7.20630 7.23813 7.39194 7.45106 7.79956 8.14018 8.39706 8.61896 9.05546 9.61039 11.09292 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.006578 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.771140 B = 4255.849027 C = 6123.002992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.118 4.118 4 C -0.102 4.102 5 C -0.084 4.084 6 C 0.132 3.868 7 H 0.071 0.929 8 O -0.378 6.378 9 C 0.063 3.937 10 C -0.156 4.156 11 C -0.109 4.109 12 C 0.066 3.934 13 H 0.044 0.956 14 N -0.683 5.683 15 C 0.197 3.803 16 C -0.511 4.511 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.089 4.089 25 C -0.125 4.125 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.331 0.669 38 H 0.028 0.972 39 H -0.014 1.014 40 H 0.260 0.740 41 H 0.124 0.876 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -3.718 15.610 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.120 4.120 5 C -0.084 4.084 6 C 0.074 3.926 7 H 0.089 0.911 8 O -0.296 6.296 9 C -0.013 4.013 10 C -0.195 4.195 11 C -0.147 4.147 12 C -0.045 4.045 13 H 0.062 0.938 14 N -0.316 5.316 15 C 0.070 3.930 16 C -0.550 4.550 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.107 4.107 25 C -0.143 4.143 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.046 0.954 39 H 0.003 0.997 40 H 0.070 0.930 41 H 0.142 0.858 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.063 -3.657 15.476 16.035 hybrid contribution -0.775 0.297 -0.989 1.291 sum -2.837 -3.360 14.487 15.140 Atomic orbital electron populations 1.20772 0.91483 1.02772 1.01886 1.19900 0.95901 0.93325 0.99771 1.20941 0.93916 0.97502 1.01295 1.20975 0.94272 0.97431 0.99319 1.19586 0.93799 0.93753 1.01293 1.21024 0.90088 0.89683 0.91812 0.91118 1.87881 1.21038 1.49028 1.71691 1.22551 0.81010 1.01316 0.96464 1.22239 1.00736 1.00085 0.96411 1.21601 0.95305 0.97433 1.00380 1.21993 0.95425 0.94879 0.92240 0.93806 1.60789 1.35320 1.29619 1.05912 1.19568 0.96281 0.95717 0.81427 1.21204 1.44530 0.97562 0.91723 0.91995 1.24980 0.95643 0.96188 0.97731 1.69972 1.49452 1.25757 1.08537 0.86452 0.78206 0.82975 0.79851 1.19646 1.20996 1.21096 1.20939 0.93761 0.97984 0.98020 1.20985 0.94132 0.97384 1.01806 0.91498 0.91551 0.91698 0.85994 0.85514 0.93275 0.89184 0.91053 0.91316 0.91423 0.91063 0.84953 0.95404 0.99659 0.93000 0.85793 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.09 -1.21 5.88 -104.62 -0.62 -1.83 16 3 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 4 C -0.10 -1.56 8.04 -39.58 -0.32 -1.88 16 5 C -0.08 -1.37 4.52 -104.63 -0.47 -1.84 16 6 C 0.13 2.14 2.51 -27.84 -0.07 2.07 16 7 H 0.07 1.11 8.05 -51.93 -0.42 0.70 16 8 O -0.38 -5.76 9.55 -35.23 -0.34 -6.09 16 9 C 0.06 0.78 6.84 37.20 0.25 1.03 16 10 C -0.16 -2.05 6.14 -26.59 -0.16 -2.22 16 11 C -0.11 -1.82 5.52 -26.55 -0.15 -1.96 16 12 C 0.07 1.23 2.13 -67.58 -0.14 1.08 16 13 H 0.04 0.91 7.80 -51.92 -0.41 0.51 16 14 N -0.68 -15.01 6.30 -107.85 -0.68 -15.69 16 15 C 0.20 5.28 5.24 -4.98 -0.03 5.25 16 16 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 17 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 20 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.09 -1.39 9.35 -39.59 -0.37 -1.76 16 25 C -0.13 -1.77 9.70 -39.58 -0.38 -2.15 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 1.80 7.92 -52.49 -0.42 1.38 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 37 H 0.33 7.08 5.84 -39.29 -0.23 6.85 16 38 H 0.03 0.80 7.53 -51.93 -0.39 0.41 16 39 H -0.01 -0.42 8.06 -51.93 -0.42 -0.84 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 1.88 7.63 -52.49 -0.40 1.48 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -31.29 338.02 -9.94 -41.23 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.84 Total: 5.60 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.90 Total: -20.59 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.06 Total: -42.15 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.34 Total: -6.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.29 -9.94 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583138763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.244 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds