Wall clock time and date at job start Mon Mar 30 2020 02:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 119.99886 * 2 1 4 4 C 1.38243 * 120.00069 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.09581 * 4 3 2 6 6 C 1.50701 * 119.99808 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.48141 * 24.97575 * 6 5 4 8 8 O 1.42897 * 109.48164 * 144.99963 * 6 5 4 9 9 C 1.42896 * 114.09972 * 181.14273 * 8 6 5 10 10 C 1.53090 * 109.41698 * 298.84410 * 9 8 6 11 11 C 1.53174 * 109.16227 * 57.60357 * 10 9 8 12 12 C 1.53090 * 109.48084 * 264.94628 * 6 5 4 13 13 H 1.09007 * 109.52144 * 302.30916 * 12 6 5 14 14 N 1.46895 * 109.52644 * 62.50284 * 12 6 5 15 15 C 1.46901 * 110.99957 * 205.00056 * 14 12 6 16 16 C 1.50698 * 109.46986 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00270 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00014 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99943 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47432 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47439 * 120.00013 * 20 18 16 23 23 H 1.48507 * 109.46814 * 239.99691 * 20 18 16 24 24 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 25 25 C 1.38234 * 120.00242 * 180.08946 * 2 1 3 26 26 H 1.08997 * 109.47341 * 269.91120 * 1 2 3 27 27 H 1.09007 * 109.47270 * 29.90821 * 1 2 3 28 28 H 1.09000 * 109.46792 * 149.90515 * 1 2 3 29 29 H 1.08001 * 120.00365 * 0.06714 * 3 2 1 30 30 H 1.08000 * 119.99728 * 180.36512 * 4 3 2 31 31 H 1.09005 * 109.48392 * 58.82617 * 9 8 6 32 32 H 1.09006 * 109.48523 * 178.85926 * 9 8 6 33 33 H 1.08996 * 109.52806 * 177.51888 * 10 9 8 34 34 H 1.09012 * 109.51950 * 297.63957 * 10 9 8 35 35 H 1.09004 * 109.54435 * 62.89717 * 11 10 9 36 36 H 1.09000 * 109.54072 * 183.06708 * 11 10 9 37 37 H 1.00903 * 111.00228 * 328.95371 * 14 12 6 38 38 H 1.08995 * 109.47226 * 299.99758 * 15 14 12 39 39 H 1.08996 * 109.46975 * 60.00149 * 15 14 12 40 40 H 0.97000 * 120.00595 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.00371 * 179.97438 * 24 5 4 42 42 H 1.08000 * 119.99729 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0009 7 1 6.1422 0.9310 0.4341 8 8 6.2553 -1.1045 0.7704 9 6 7.6794 -1.1840 0.8577 10 6 8.2664 -1.3570 -0.5456 11 6 7.8198 -0.1853 -1.4253 12 6 6.2893 -0.1254 -1.4387 13 1 5.8930 -1.0362 -1.8878 14 7 5.8504 1.0393 -2.2189 15 6 5.7799 0.7177 -3.6506 16 6 5.3267 1.9337 -4.4168 17 1 5.1120 2.8533 -3.8926 18 6 5.1850 1.8719 -5.7869 19 7 5.4459 0.7520 -6.4251 20 14 4.6239 3.3793 -6.7368 21 1 4.3979 4.5033 -5.7930 22 1 5.6681 3.7612 -7.7211 23 1 3.3589 3.0715 -7.4513 24 6 3.5806 -1.1971 -0.0024 25 6 2.1982 -1.1971 -0.0019 26 1 -0.3634 -0.0016 1.0276 27 1 -0.3634 0.8908 -0.5124 28 1 -0.3633 -0.8891 -0.5153 29 1 1.6582 2.1325 0.0011 30 1 4.1205 2.1325 0.0065 31 1 8.0679 -0.2685 1.3039 32 1 7.9587 -2.0370 1.4762 33 1 9.3545 -1.3736 -0.4858 34 1 7.9109 -2.2932 -0.9763 35 1 8.2177 0.7460 -1.0220 36 1 8.1892 -0.3301 -2.4406 37 1 4.9650 1.3872 -1.8824 38 1 6.7648 0.4120 -4.0032 39 1 5.0700 -0.0946 -3.8059 40 1 5.3466 0.7086 -7.3891 41 1 4.1205 -2.1325 -0.0040 42 1 1.6582 -2.1324 -0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583138763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:57 Heat of formation + Delta-G solvation = -55.953325 kcal Electronic energy + Delta-G solvation = -21643.906173 eV Core-core repulsion = 18587.006086 eV Total energy + Delta-G solvation = -3056.900087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25481 -39.59138 -37.08942 -34.86715 -34.59113 -33.09277 -31.84775 -30.95431 -28.31197 -27.61153 -25.43942 -24.13301 -23.66202 -23.10721 -21.75360 -20.98331 -18.72241 -17.76116 -17.39571 -16.83580 -16.63781 -16.09735 -15.83338 -15.71458 -15.49276 -15.23538 -14.57909 -14.51807 -14.31860 -14.19614 -13.99938 -13.67934 -13.52621 -13.04117 -12.87141 -12.75614 -12.68379 -12.40538 -12.35257 -12.13932 -12.04790 -11.85245 -11.72907 -11.34896 -11.25254 -10.69643 -10.50619 -9.83676 -9.41054 -9.21430 -8.24877 -6.36591 0.35106 0.49526 1.39224 1.40093 1.54209 2.37667 2.63696 2.83176 3.08444 3.50075 3.72396 3.81770 3.90555 3.97626 4.04577 4.11672 4.16977 4.21593 4.24301 4.48685 4.56340 4.60365 4.68630 4.81087 4.85337 4.86073 4.92471 4.95090 5.01553 5.05174 5.14341 5.17966 5.22113 5.28216 5.32716 5.48819 5.58806 5.63209 5.69067 5.97116 6.10425 6.19869 6.39269 6.66810 6.84690 7.34375 8.87359 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.006578 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.771140 B = 4255.849027 C = 6123.002992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.145 3.855 7 H 0.078 0.922 8 O -0.387 6.387 9 C 0.058 3.942 10 C -0.148 4.148 11 C -0.109 4.109 12 C 0.065 3.935 13 H 0.014 0.986 14 N -0.676 5.676 15 C 0.216 3.784 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.106 4.106 25 C -0.133 4.133 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.336 0.664 38 H 0.001 0.999 39 H -0.050 1.050 40 H 0.265 0.735 41 H 0.120 0.880 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 -2.665 16.742 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.108 4.108 6 C 0.087 3.913 7 H 0.096 0.904 8 O -0.305 6.305 9 C -0.018 4.018 10 C -0.186 4.186 11 C -0.147 4.147 12 C -0.045 4.045 13 H 0.032 0.968 14 N -0.310 5.310 15 C 0.088 3.912 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.184 1.184 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.125 4.125 25 C -0.151 4.151 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.155 0.845 38 H 0.019 0.981 39 H -0.033 1.033 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.816 -2.610 16.638 17.075 hybrid contribution -0.529 -0.102 -1.312 1.418 sum -3.345 -2.712 15.326 15.920 Atomic orbital electron populations 1.20832 0.88990 1.03542 1.03336 1.20337 0.97803 0.92839 0.98275 1.21292 0.93634 0.98832 1.00710 1.21170 0.95157 0.97354 0.99703 1.19736 0.93916 0.94460 1.02722 1.20787 0.90375 0.90350 0.89777 0.90445 1.87888 1.22962 1.48594 1.71059 1.22837 0.79380 1.03470 0.96139 1.22207 1.02529 0.97742 0.96157 1.21591 0.93645 0.99583 0.99859 1.22074 0.96812 0.92128 0.93534 0.96782 1.60698 1.35462 1.31066 1.03724 1.19159 0.93521 0.94205 0.84308 1.21533 1.45088 0.98005 0.92543 0.91656 1.25982 0.95315 0.99628 0.98773 1.70107 1.50111 1.28183 1.09116 0.85266 0.77879 0.78815 0.78247 1.18401 1.20221 1.20273 1.21068 0.94756 0.97764 0.98863 1.21297 0.93690 0.98795 1.01311 0.89583 0.90803 0.90935 0.83799 0.84947 0.91712 0.86176 0.88181 0.92158 0.90742 0.93801 0.84494 0.98128 1.03270 0.92597 0.86226 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 10.01 71.24 0.71 -1.32 16 2 C -0.09 -2.39 5.88 -19.87 -0.12 -2.51 16 3 C -0.13 -3.44 9.70 22.27 0.22 -3.23 16 4 C -0.12 -3.53 8.04 22.27 0.18 -3.35 16 5 C -0.11 -3.57 4.52 -19.87 -0.09 -3.66 16 6 C 0.15 4.74 2.51 29.88 0.07 4.82 16 7 H 0.08 2.40 8.05 -2.38 -0.02 2.38 16 8 O -0.39 -11.51 9.55 -148.98 -1.42 -12.94 16 9 C 0.06 1.30 6.84 72.01 0.49 1.80 16 10 C -0.15 -3.76 6.14 30.68 0.19 -3.57 16 11 C -0.11 -3.70 5.52 30.71 0.17 -3.53 16 12 C 0.07 2.54 2.13 45.00 0.10 2.64 16 13 H 0.01 0.63 7.80 -2.38 -0.02 0.61 16 14 N -0.68 -30.89 6.30 -495.13 -3.12 -34.01 16 15 C 0.22 12.20 5.24 85.56 0.45 12.65 16 16 C -0.53 -31.36 9.32 25.60 0.24 -31.13 16 17 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 18 C 0.00 0.06 5.46 84.66 0.46 0.53 16 19 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 20 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.11 -3.39 9.35 22.27 0.21 -3.18 16 25 C -0.13 -3.69 9.70 22.27 0.22 -3.47 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.26 8.09 -2.38 -0.02 1.24 16 28 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 29 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.13 3.74 7.92 -2.91 -0.02 3.72 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.04 1.70 7.57 -2.39 -0.02 1.68 16 37 H 0.34 14.76 5.84 -89.69 -0.52 14.24 16 38 H 0.00 0.04 7.53 -2.39 -0.02 0.02 16 39 H -0.05 -3.14 8.06 -2.39 -0.02 -3.16 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.12 3.78 7.63 -2.91 -0.02 3.75 16 42 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -69.23 338.02 1.73 -67.50 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.46 Total: 26.62 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.50 Total: -36.52 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -2.83 Total: -91.63 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.42 Total: -12.94 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.23 1.73 -67.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583138763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.550 kcal (2) G-P(sol) polarization free energy of solvation -69.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds