Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48500 * 109.47427 * 270.00061 * 3 2 1 5 5 H 1.48502 * 109.46975 * 29.99873 * 3 2 1 6 6 H 1.48501 * 109.46991 * 149.99713 * 3 2 1 7 7 C 1.37880 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46948 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.42900 * 114.00554 * 180.02562 * 11 10 9 13 13 C 1.53116 * 109.52410 * 149.99647 * 12 11 10 14 14 C 1.53035 * 109.27620 * 177.56206 * 13 12 11 15 15 N 1.46855 * 109.52301 * 300.82119 * 14 13 12 16 16 C 1.39676 * 110.99902 * 185.83835 * 15 14 13 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 15 14 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 21 21 C 1.38112 * 120.07587 * 0.55318 * 20 19 18 22 22 C 1.46849 * 111.19593 * 61.74571 * 15 14 13 23 23 C 1.53041 * 109.52056 * 298.25550 * 22 15 14 24 24 H 0.97001 * 119.99749 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46991 * 60.00138 * 9 7 2 26 26 H 1.09002 * 109.47158 * 300.00048 * 9 7 2 27 27 H 1.08999 * 109.46998 * 60.00342 * 10 9 7 28 28 H 1.08997 * 109.47375 * 299.99620 * 10 9 7 29 29 H 1.09001 * 109.51480 * 29.87080 * 12 11 10 30 30 H 1.09005 * 109.50279 * 57.62260 * 13 12 11 31 31 H 1.09001 * 109.54124 * 297.52156 * 13 12 11 32 32 H 1.09008 * 109.46354 * 180.80902 * 14 13 12 33 33 H 1.08993 * 109.45683 * 60.83204 * 14 13 12 34 34 H 1.07999 * 120.03932 * 0.04675 * 17 16 15 35 35 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.92357 * 179.69823 * 19 18 17 37 37 H 1.08002 * 119.96005 * 180.25011 * 20 19 18 38 38 H 1.07998 * 120.03717 * 179.70130 * 21 20 19 39 39 H 1.08995 * 109.46185 * 58.27117 * 22 15 14 40 40 H 1.08997 * 109.45953 * 178.24444 * 22 15 14 41 41 H 1.09000 * 109.50381 * 299.23776 * 23 22 15 42 42 H 1.09001 * 109.50327 * 179.12024 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8997 -0.0001 12 6 2.3706 -6.0558 0.0005 13 6 1.6597 -7.2044 0.7215 14 6 2.5378 -8.4564 0.6658 15 7 2.7910 -8.8163 -0.7353 16 6 3.4793 -10.0285 -0.8242 17 6 3.8164 -10.5479 -2.0676 18 6 4.4965 -11.7470 -2.1520 19 6 4.8366 -12.4333 -1.0006 20 6 4.5075 -11.9162 0.2390 21 6 3.8275 -10.7175 0.3305 22 6 3.5150 -7.7476 -1.4355 23 6 2.6659 -6.4743 -1.4425 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 3.3050 -5.8269 0.5129 30 1 0.7065 -7.4064 0.2328 31 1 1.4842 -6.9290 1.7615 32 1 2.0282 -9.2801 1.1658 33 1 3.4853 -8.2579 1.1666 34 1 3.5474 -10.0145 -2.9674 35 1 4.7585 -12.1516 -3.1185 36 1 5.3641 -13.3732 -1.0696 37 1 4.7782 -12.4527 1.1363 38 1 3.5665 -10.3167 1.2988 39 1 4.4578 -7.5526 -0.9247 40 1 3.7149 -8.0563 -2.4615 41 1 1.7286 -6.6648 -1.9653 42 1 3.2100 -5.6769 -1.9486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586477351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -26.443627 kcal Electronic energy + Delta-G solvation = -20589.380653 eV Core-core repulsion = 17533.760202 eV Total energy + Delta-G solvation = -3055.620450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54462 -38.44163 -36.73366 -33.51431 -32.56806 -31.79638 -30.54537 -29.87282 -28.60299 -24.93328 -24.06395 -23.79421 -21.81571 -21.45367 -20.89664 -19.76819 -17.94174 -16.71247 -16.03322 -15.67009 -15.63083 -15.18531 -14.80916 -14.56939 -14.45768 -13.96552 -13.85747 -13.70437 -13.35014 -12.90751 -12.52370 -12.30321 -12.16070 -11.73025 -11.49574 -11.44626 -11.30949 -11.15062 -10.97638 -10.87573 -10.52192 -10.26290 -10.16924 -9.87577 -9.46826 -9.20878 -9.15499 -8.84854 -8.36387 -8.00618 -6.03915 -4.07653 1.17576 1.19355 3.30020 3.35928 3.38952 3.40159 3.70387 4.14306 4.46136 4.59778 4.67865 4.75462 4.83711 4.92564 5.04639 5.11181 5.20747 5.21418 5.32068 5.32951 5.40065 5.41807 5.58213 5.59809 5.67240 5.74319 5.87825 6.00444 6.12390 6.17765 6.20653 6.21265 6.34397 6.35699 6.38394 6.58958 6.84514 6.88117 7.13070 7.54874 7.78469 7.82631 8.11088 8.35259 8.98978 9.56057 11.07723 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.049451 B = 0.002700 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.081822 B =10367.283974 C =10539.037812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.382 6.382 12 C 0.087 3.913 13 C -0.116 4.116 14 C 0.056 3.944 15 N -0.490 5.490 16 C 0.118 3.882 17 C -0.143 4.143 18 C -0.096 4.096 19 C -0.153 4.153 20 C -0.094 4.094 21 C -0.175 4.175 22 C 0.064 3.936 23 C -0.141 4.141 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.329 -23.732 -1.207 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.302 6.302 12 C 0.029 3.971 13 C -0.153 4.153 14 C -0.071 4.071 15 N -0.204 5.204 16 C 0.020 3.980 17 C -0.164 4.164 18 C -0.114 4.114 19 C -0.172 4.172 20 C -0.113 4.113 21 C -0.196 4.196 22 C -0.061 4.061 23 C -0.180 4.180 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.478 -23.563 -1.430 25.082 hybrid contribution 1.350 1.012 0.309 1.715 sum 9.828 -22.551 -1.121 24.625 Atomic orbital electron populations 1.69984 1.06068 1.26768 1.50124 1.25000 0.94882 0.99298 0.95133 0.86529 0.79750 0.83177 0.78157 1.20563 1.21100 1.19852 1.21050 0.92967 0.90593 1.51620 0.92608 1.19066 0.94240 0.89448 0.98436 1.22914 0.96355 0.83354 0.98030 1.87979 1.33799 1.13579 1.94817 1.21976 0.93645 0.87181 0.94325 1.21676 0.99808 0.92347 1.01519 1.22269 0.99362 0.98278 0.87209 1.59009 1.44129 1.01825 1.15465 1.19038 0.92847 0.92342 0.93803 1.20829 1.01926 0.97309 0.96300 1.21014 0.97446 0.94499 0.98464 1.21050 1.02954 1.00603 0.92627 1.21004 0.97323 0.95300 0.97644 1.21354 1.02457 0.97925 0.97828 1.22208 0.94802 0.90182 0.98942 1.22157 1.01267 0.95759 0.98768 0.92835 0.95749 0.95762 0.94799 0.94788 0.93002 0.90040 0.90356 0.89604 0.93565 0.85745 0.86031 0.86380 0.86201 0.85530 0.93842 0.89878 0.90008 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.51 5.69 37.16 0.21 1.73 16 11 O -0.38 -7.70 9.99 -35.23 -0.35 -8.05 16 12 C 0.09 1.33 2.68 -26.61 -0.07 1.26 16 13 C -0.12 -1.50 5.75 -26.65 -0.15 -1.65 16 14 C 0.06 0.60 4.15 -3.83 -0.02 0.59 16 15 N -0.49 -5.66 4.70 -171.15 -0.80 -6.46 16 16 C 0.12 1.29 5.64 -83.79 -0.47 0.82 16 17 C -0.14 -1.44 9.16 -39.38 -0.36 -1.80 16 18 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 19 C -0.15 -1.29 10.04 -39.55 -0.40 -1.68 16 20 C -0.09 -0.82 10.04 -39.61 -0.40 -1.22 16 21 C -0.17 -1.73 8.82 -39.38 -0.35 -2.08 16 22 C 0.06 0.72 5.26 -3.83 -0.02 0.70 16 23 C -0.14 -1.91 5.72 -26.65 -0.15 -2.07 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.03 0.71 7.96 -51.93 -0.41 0.30 16 29 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.83 6.98 -51.92 -0.36 0.46 16 33 H 0.05 0.47 7.74 -51.93 -0.40 0.07 16 34 H 0.12 1.15 7.15 -52.49 -0.38 0.77 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.10 5.81 -52.49 -0.30 0.80 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.84 6.70 -51.93 -0.35 0.49 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.03 7.96 -51.93 -0.41 0.61 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -31.23 336.98 -10.29 -41.51 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.79 Total: -2.56 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.13 Total: -19.80 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: -0.07 Total: -32.77 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.35 Total: -8.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.23 -10.29 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586477351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.070 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds