Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48500 * 109.47427 * 270.00061 * 3 2 1 5 5 H 1.48502 * 109.46975 * 29.99873 * 3 2 1 6 6 H 1.48501 * 109.46991 * 149.99713 * 3 2 1 7 7 C 1.37880 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46948 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.42900 * 114.00554 * 180.02562 * 11 10 9 13 13 C 1.53116 * 109.52410 * 149.99647 * 12 11 10 14 14 C 1.53035 * 109.27620 * 177.56206 * 13 12 11 15 15 N 1.46855 * 109.52301 * 300.82119 * 14 13 12 16 16 C 1.39676 * 110.99902 * 185.83835 * 15 14 13 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 15 14 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 21 21 C 1.38112 * 120.07587 * 0.55318 * 20 19 18 22 22 C 1.46849 * 111.19593 * 61.74571 * 15 14 13 23 23 C 1.53041 * 109.52056 * 298.25550 * 22 15 14 24 24 H 0.97001 * 119.99749 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46991 * 60.00138 * 9 7 2 26 26 H 1.09002 * 109.47158 * 300.00048 * 9 7 2 27 27 H 1.08999 * 109.46998 * 60.00342 * 10 9 7 28 28 H 1.08997 * 109.47375 * 299.99620 * 10 9 7 29 29 H 1.09001 * 109.51480 * 29.87080 * 12 11 10 30 30 H 1.09005 * 109.50279 * 57.62260 * 13 12 11 31 31 H 1.09001 * 109.54124 * 297.52156 * 13 12 11 32 32 H 1.09008 * 109.46354 * 180.80902 * 14 13 12 33 33 H 1.08993 * 109.45683 * 60.83204 * 14 13 12 34 34 H 1.07999 * 120.03932 * 0.04675 * 17 16 15 35 35 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.92357 * 179.69823 * 19 18 17 37 37 H 1.08002 * 119.96005 * 180.25011 * 20 19 18 38 38 H 1.07998 * 120.03717 * 179.70130 * 21 20 19 39 39 H 1.08995 * 109.46185 * 58.27117 * 22 15 14 40 40 H 1.08997 * 109.45953 * 178.24444 * 22 15 14 41 41 H 1.09000 * 109.50381 * 299.23776 * 23 22 15 42 42 H 1.09001 * 109.50327 * 179.12024 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8997 -0.0001 12 6 2.3706 -6.0558 0.0005 13 6 1.6597 -7.2044 0.7215 14 6 2.5378 -8.4564 0.6658 15 7 2.7910 -8.8163 -0.7353 16 6 3.4793 -10.0285 -0.8242 17 6 3.8164 -10.5479 -2.0676 18 6 4.4965 -11.7470 -2.1520 19 6 4.8366 -12.4333 -1.0006 20 6 4.5075 -11.9162 0.2390 21 6 3.8275 -10.7175 0.3305 22 6 3.5150 -7.7476 -1.4355 23 6 2.6659 -6.4743 -1.4425 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 3.3050 -5.8269 0.5129 30 1 0.7065 -7.4064 0.2328 31 1 1.4842 -6.9290 1.7615 32 1 2.0282 -9.2801 1.1658 33 1 3.4853 -8.2579 1.1666 34 1 3.5474 -10.0145 -2.9674 35 1 4.7585 -12.1516 -3.1185 36 1 5.3641 -13.3732 -1.0696 37 1 4.7782 -12.4527 1.1363 38 1 3.5665 -10.3167 1.2988 39 1 4.4578 -7.5526 -0.9247 40 1 3.7149 -8.0563 -2.4615 41 1 1.7286 -6.6648 -1.9653 42 1 3.2100 -5.6769 -1.9486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586477351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = -44.213995 kcal Electronic energy + Delta-G solvation = -20590.151234 eV Core-core repulsion = 17533.760202 eV Total energy + Delta-G solvation = -3056.391031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38733 -39.55438 -37.90627 -35.45398 -33.88725 -32.62579 -31.77213 -31.32886 -29.54423 -26.78338 -25.08168 -24.85166 -22.94098 -22.53012 -22.29174 -20.81842 -18.85342 -18.57552 -17.26877 -16.84034 -16.60874 -16.53575 -16.39155 -15.89534 -15.34665 -15.01166 -14.88575 -14.67771 -14.36501 -14.29741 -13.97632 -13.57008 -13.28666 -13.01517 -12.95295 -12.70186 -12.60860 -12.39622 -12.28602 -12.16562 -11.98827 -11.71609 -11.52123 -11.39648 -11.31590 -10.65724 -10.63845 -10.31105 -9.82732 -8.77338 -8.24565 -6.37963 0.48171 0.51671 1.40346 1.42806 1.53936 2.36483 2.61997 2.81354 2.99127 3.09220 3.70313 3.73259 3.95042 4.05450 4.11027 4.13145 4.23892 4.30707 4.33478 4.39189 4.43142 4.50018 4.59701 4.61062 4.64136 4.73775 4.75450 4.83833 4.92744 5.01901 5.14646 5.17962 5.21314 5.36801 5.37584 5.54638 5.56807 5.68885 5.72491 5.88624 6.03535 6.10705 6.37566 6.45476 6.78109 7.31945 8.88556 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.049451 B = 0.002700 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.081822 B =10367.283974 C =10539.037812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.028 3.972 10 C 0.087 3.913 11 O -0.406 6.406 12 C 0.079 3.921 13 C -0.111 4.111 14 C 0.063 3.937 15 N -0.501 5.501 16 C 0.097 3.903 17 C -0.157 4.157 18 C -0.100 4.100 19 C -0.155 4.155 20 C -0.100 4.100 21 C -0.185 4.185 22 C 0.071 3.929 23 C -0.136 4.136 24 H 0.266 0.734 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.572 -24.825 -1.072 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.086 0.914 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.326 6.326 12 C 0.021 3.979 13 C -0.149 4.149 14 C -0.064 4.064 15 N -0.216 5.216 16 C 0.000 4.000 17 C -0.177 4.177 18 C -0.119 4.119 19 C -0.174 4.174 20 C -0.118 4.118 21 C -0.206 4.206 22 C -0.054 4.054 23 C -0.174 4.174 24 H 0.075 0.925 25 H 0.011 0.989 26 H 0.012 0.988 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.735 -24.690 -1.296 26.954 hybrid contribution 0.623 1.222 0.258 1.395 sum 11.358 -23.468 -1.038 26.093 Atomic orbital electron populations 1.70131 1.08064 1.28100 1.50912 1.26065 0.95827 1.03719 0.94300 0.85302 0.78571 0.77625 0.78655 1.19540 1.20635 1.18361 1.21467 0.93703 0.91433 1.51713 0.91431 1.18934 0.94637 0.91970 0.95401 1.22483 0.94696 0.82771 0.98936 1.87932 1.35291 1.14239 1.95098 1.22309 0.93688 0.85960 0.95951 1.21645 0.99483 0.92549 1.01191 1.22223 0.99389 0.97376 0.87403 1.59007 1.44776 1.02163 1.15663 1.19166 0.93961 0.92244 0.94637 1.20997 1.02459 0.98071 0.96178 1.21312 0.96821 0.94014 0.99738 1.21404 1.02365 1.01288 0.92359 1.21322 0.96721 0.95006 0.98783 1.21541 1.02718 0.98455 0.97862 1.22120 0.94265 0.89112 0.99879 1.22070 1.01048 0.96985 0.97311 0.92532 0.98903 0.98827 0.93760 0.93752 0.92060 0.91389 0.89978 0.88226 0.92608 0.85600 0.84030 0.84128 0.84121 0.84756 0.93363 0.88719 0.91388 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.98 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.09 3.86 5.69 71.98 0.41 4.27 16 11 O -0.41 -16.69 9.99 -148.98 -1.49 -18.18 16 12 C 0.08 2.38 2.68 30.67 0.08 2.46 16 13 C -0.11 -2.84 5.75 30.64 0.18 -2.66 16 14 C 0.06 1.28 4.15 86.32 0.36 1.64 16 15 N -0.50 -11.06 4.70 -695.38 -3.27 -14.33 16 16 C 0.10 2.00 5.64 38.21 0.22 2.21 16 17 C -0.16 -2.93 9.16 22.40 0.21 -2.72 16 18 C -0.10 -1.53 10.04 22.25 0.22 -1.31 16 19 C -0.16 -2.19 10.04 22.29 0.22 -1.97 16 20 C -0.10 -1.50 10.04 22.25 0.22 -1.27 16 21 C -0.19 -3.31 8.82 22.40 0.20 -3.11 16 22 C 0.07 1.55 5.26 86.33 0.45 2.00 16 23 C -0.14 -3.66 5.72 30.65 0.18 -3.49 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.04 1.86 8.09 -2.39 -0.02 1.84 16 28 H 0.04 1.86 7.96 -2.39 -0.02 1.84 16 29 H 0.06 1.75 7.79 -2.39 -0.02 1.73 16 30 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 1.76 6.98 -2.38 -0.02 1.75 16 33 H 0.06 1.04 7.74 -2.39 -0.02 1.02 16 34 H 0.13 2.20 7.15 -2.91 -0.02 2.18 16 35 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.13 2.07 5.81 -2.91 -0.02 2.06 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.82 6.70 -2.39 -0.02 1.80 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 1.97 7.96 -2.39 -0.02 1.95 16 Total: -1.00 -68.01 336.98 2.33 -65.68 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.98 Total: 11.32 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.80 Total: -33.10 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -2.98 Total: -71.90 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.49 Total: -18.18 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.01 2.33 -65.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586477351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.464 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds