Wall clock time and date at job start Mon Mar 30 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38263 * 119.99675 * 2 1 4 4 C 1.38208 * 119.99524 * 180.23550 * 3 2 1 5 5 C 1.38266 * 120.00171 * 359.81004 * 4 3 2 6 6 C 1.38207 * 120.00060 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00119 * 179.79635 * 2 1 3 8 8 C 1.50703 * 120.00062 * 359.97438 * 7 2 1 9 9 N 1.46505 * 109.47064 * 79.72740 * 8 7 2 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47452 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47197 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46958 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99601 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99691 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00516 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46872 * 60.00296 * 20 18 16 22 22 H 1.48503 * 109.47134 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47341 * 300.00211 * 20 18 16 24 24 H 1.09005 * 109.47115 * 270.20277 * 1 2 3 25 25 H 1.08999 * 109.47623 * 30.20639 * 1 2 3 26 26 H 1.09002 * 109.47148 * 150.20710 * 1 2 3 27 27 H 1.07992 * 119.99962 * 0.06789 * 3 2 1 28 28 H 1.07999 * 120.00327 * 179.83714 * 4 3 2 29 29 H 1.08000 * 119.99709 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.00090 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47152 * 319.72824 * 8 7 2 32 32 H 1.09001 * 109.46980 * 199.72924 * 8 7 2 33 33 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 34 34 H 1.09001 * 109.47380 * 300.00190 * 12 10 9 35 35 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 36 36 H 1.09001 * 109.47289 * 299.99918 * 13 12 10 37 37 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 38 38 H 1.08998 * 109.47061 * 300.00668 * 14 13 12 39 39 H 1.09002 * 109.46668 * 60.00355 * 14 13 12 40 40 H 1.09001 * 109.47142 * 300.00233 * 15 14 13 41 41 H 1.09002 * 109.47097 * 60.00198 * 15 14 13 42 42 H 0.97002 * 120.00201 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0049 5 6 4.2716 0.0000 -0.0059 6 6 3.5806 -1.1969 -0.0014 7 6 2.1980 -1.1969 0.0043 8 6 1.4446 -2.5020 0.0095 9 7 0.9866 -2.8069 -1.3483 10 6 0.2864 -3.9337 -1.5861 11 8 0.0351 -4.6950 -0.6761 12 6 -0.1852 -4.2470 -2.9827 13 6 -0.9501 -5.5721 -2.9775 14 6 -1.4295 -5.8900 -4.3953 15 6 -2.1938 -7.2154 -4.3901 16 6 -2.6654 -7.5287 -5.7867 17 1 -2.4419 -6.8506 -6.5969 18 6 -3.3812 -8.6817 -6.0301 19 7 -3.6529 -9.5077 -5.0435 20 14 -3.9652 -9.0704 -7.7614 21 1 -2.7929 -9.1781 -8.6667 22 1 -4.7071 -10.3568 -7.7564 23 1 -4.8602 -7.9852 -8.2374 24 1 -0.3633 0.0036 1.0277 25 1 -0.3634 0.8881 -0.5170 26 1 -0.3633 -0.8918 -0.5106 27 1 1.6582 2.1326 0.0011 28 1 4.1203 2.1327 -0.0076 29 1 5.3516 0.0001 -0.0101 30 1 4.1206 -2.1322 -0.0025 31 1 0.5841 -2.4222 0.6738 32 1 2.1008 -3.2990 0.3592 33 1 1.1879 -2.1982 -2.0762 34 1 -0.8420 -3.4502 -3.3318 35 1 0.6750 -4.3263 -3.6475 36 1 -0.2936 -6.3692 -2.6283 37 1 -1.8103 -5.4925 -2.3128 38 1 -2.0859 -5.0928 -4.7441 39 1 -0.5695 -5.9695 -5.0603 40 1 -1.5368 -8.0123 -4.0415 41 1 -3.0537 -7.1363 -3.7250 42 1 -4.1568 -10.3187 -5.2147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588148018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:48 Heat of formation + Delta-G solvation = -47.957382 kcal Electronic energy + Delta-G solvation = -19823.188188 eV Core-core repulsion = 16766.634831 eV Total energy + Delta-G solvation = -3056.553357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27288 -39.24285 -35.33201 -34.73021 -33.03342 -32.60971 -31.66970 -29.70706 -27.61069 -26.47278 -25.06041 -22.53087 -22.21561 -21.06669 -20.26053 -19.93009 -17.22697 -16.49593 -16.23603 -16.16753 -15.87213 -15.46346 -15.09192 -14.43061 -14.13658 -14.04220 -13.65422 -13.48931 -13.12904 -12.94481 -12.58673 -12.52410 -12.36665 -12.03238 -11.66182 -11.58515 -11.37040 -11.26903 -10.94632 -10.51887 -10.49547 -10.37862 -9.89851 -9.58220 -9.28483 -9.17123 -9.14920 -9.01435 -8.92049 -8.28069 -5.92892 -3.95457 0.86614 1.00004 2.75418 3.08777 3.36827 3.41086 3.43372 3.55380 4.30558 4.43119 4.50786 4.56146 4.66188 4.92117 4.94522 4.98638 5.25395 5.29746 5.34447 5.37769 5.41767 5.43403 5.44595 5.50500 5.67999 5.83524 5.90088 6.08196 6.12200 6.17279 6.25944 6.30609 6.34492 6.58067 6.61019 6.87345 7.05373 7.22996 7.46146 7.76358 7.92936 8.08629 8.28595 8.50361 9.12080 9.67973 11.18378 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042002 B = 0.002328 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.474283 B =12022.715350 C =12108.390099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.111 4.111 5 C -0.129 4.129 6 C -0.097 4.097 7 C -0.108 4.108 8 C 0.160 3.840 9 N -0.734 5.734 10 C 0.511 3.489 11 O -0.535 6.535 12 C -0.138 4.138 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.811 23.692 10.797 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.129 4.129 5 C -0.147 4.147 6 C -0.115 4.115 7 C -0.109 4.109 8 C 0.037 3.963 9 N -0.388 5.388 10 C 0.299 3.701 11 O -0.411 6.411 12 C -0.178 4.178 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.520 22.937 11.513 29.487 hybrid contribution -0.103 0.129 -1.241 1.252 sum 14.417 23.066 10.272 29.076 Atomic orbital electron populations 1.20924 0.90919 1.03438 1.02802 1.19868 0.96243 0.92486 0.98048 1.21063 0.94297 0.97503 1.01337 1.21197 0.94334 0.98159 0.99199 1.21150 1.00013 0.92425 1.01094 1.21126 0.93395 0.98470 0.98540 1.19804 0.93819 0.94183 1.03061 1.20121 0.98169 0.93030 0.84994 1.46180 1.57706 1.24740 1.10145 1.21132 0.76941 0.80031 0.91991 1.90711 1.55803 1.48043 1.46514 1.21796 1.01934 1.01496 0.92604 1.21452 0.99524 0.93868 0.99276 1.21651 0.99392 1.00436 0.93306 1.19095 0.94996 0.90866 0.96776 1.21248 1.34255 1.05918 0.94451 0.92820 1.25043 0.96280 0.96403 0.96871 1.69965 1.40158 1.12173 1.31186 0.86671 0.78841 0.77502 0.85028 1.20293 1.21334 1.20298 0.90855 0.91311 0.90729 0.85920 0.86012 0.85928 0.85750 0.90597 0.90860 0.76558 0.89162 0.89157 0.91812 0.91810 0.93493 0.93501 0.96596 0.96593 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.26 36.00 0.33 -0.55 16 2 C -0.07 -0.52 5.88 -104.62 -0.62 -1.14 16 3 C -0.12 -0.88 9.70 -39.58 -0.38 -1.27 16 4 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 5 C -0.13 -0.90 10.05 -39.58 -0.40 -1.29 16 6 C -0.10 -0.76 9.67 -39.58 -0.38 -1.14 16 7 C -0.11 -0.92 5.25 -104.62 -0.55 -1.47 16 8 C 0.16 1.58 4.93 -5.19 -0.03 1.55 16 9 N -0.73 -7.52 4.87 -61.47 -0.30 -7.82 16 10 C 0.51 7.12 7.83 -10.99 -0.09 7.04 16 11 O -0.53 -9.77 15.98 5.56 0.09 -9.68 16 12 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 13 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 14 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 20 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.07 0.60 6.33 -51.93 -0.33 0.27 16 27 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 28 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 29 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 30 H 0.12 0.85 8.04 -52.49 -0.42 0.43 16 31 H 0.08 0.80 7.30 -51.93 -0.38 0.42 16 32 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 33 H 0.40 3.22 8.46 -40.82 -0.35 2.87 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -33.89 352.15 -9.58 -43.47 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.92 Total: -1.94 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -3.47 Total: -19.37 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.44 Total: -34.81 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.89 -9.58 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.488 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds