Wall clock time and date at job start Mon Mar 30 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38263 * 119.99675 * 2 1 4 4 C 1.38208 * 119.99524 * 180.23550 * 3 2 1 5 5 C 1.38266 * 120.00171 * 359.81004 * 4 3 2 6 6 C 1.38207 * 120.00060 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00119 * 179.79635 * 2 1 3 8 8 C 1.50703 * 120.00062 * 359.97438 * 7 2 1 9 9 N 1.46505 * 109.47064 * 79.72740 * 8 7 2 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47452 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47197 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46958 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99601 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99691 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00516 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46872 * 60.00296 * 20 18 16 22 22 H 1.48503 * 109.47134 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47341 * 300.00211 * 20 18 16 24 24 H 1.09005 * 109.47115 * 270.20277 * 1 2 3 25 25 H 1.08999 * 109.47623 * 30.20639 * 1 2 3 26 26 H 1.09002 * 109.47148 * 150.20710 * 1 2 3 27 27 H 1.07992 * 119.99962 * 0.06789 * 3 2 1 28 28 H 1.07999 * 120.00327 * 179.83714 * 4 3 2 29 29 H 1.08000 * 119.99709 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.00090 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47152 * 319.72824 * 8 7 2 32 32 H 1.09001 * 109.46980 * 199.72924 * 8 7 2 33 33 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 34 34 H 1.09001 * 109.47380 * 300.00190 * 12 10 9 35 35 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 36 36 H 1.09001 * 109.47289 * 299.99918 * 13 12 10 37 37 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 38 38 H 1.08998 * 109.47061 * 300.00668 * 14 13 12 39 39 H 1.09002 * 109.46668 * 60.00355 * 14 13 12 40 40 H 1.09001 * 109.47142 * 300.00233 * 15 14 13 41 41 H 1.09002 * 109.47097 * 60.00198 * 15 14 13 42 42 H 0.97002 * 120.00201 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0049 5 6 4.2716 0.0000 -0.0059 6 6 3.5806 -1.1969 -0.0014 7 6 2.1980 -1.1969 0.0043 8 6 1.4446 -2.5020 0.0095 9 7 0.9866 -2.8069 -1.3483 10 6 0.2864 -3.9337 -1.5861 11 8 0.0351 -4.6950 -0.6761 12 6 -0.1852 -4.2470 -2.9827 13 6 -0.9501 -5.5721 -2.9775 14 6 -1.4295 -5.8900 -4.3953 15 6 -2.1938 -7.2154 -4.3901 16 6 -2.6654 -7.5287 -5.7867 17 1 -2.4419 -6.8506 -6.5969 18 6 -3.3812 -8.6817 -6.0301 19 7 -3.6529 -9.5077 -5.0435 20 14 -3.9652 -9.0704 -7.7614 21 1 -2.7929 -9.1781 -8.6667 22 1 -4.7071 -10.3568 -7.7564 23 1 -4.8602 -7.9852 -8.2374 24 1 -0.3633 0.0036 1.0277 25 1 -0.3634 0.8881 -0.5170 26 1 -0.3633 -0.8918 -0.5106 27 1 1.6582 2.1326 0.0011 28 1 4.1203 2.1327 -0.0076 29 1 5.3516 0.0001 -0.0101 30 1 4.1206 -2.1322 -0.0025 31 1 0.5841 -2.4222 0.6738 32 1 2.1008 -3.2990 0.3592 33 1 1.1879 -2.1982 -2.0762 34 1 -0.8420 -3.4502 -3.3318 35 1 0.6750 -4.3263 -3.6475 36 1 -0.2936 -6.3692 -2.6283 37 1 -1.8103 -5.4925 -2.3128 38 1 -2.0859 -5.0928 -4.7441 39 1 -0.5695 -5.9695 -5.0603 40 1 -1.5368 -8.0123 -4.0415 41 1 -3.0537 -7.1363 -3.7250 42 1 -4.1568 -10.3187 -5.2147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:48 Heat of formation + Delta-G solvation = -67.746104 kcal Electronic energy + Delta-G solvation = -19824.046291 eV Core-core repulsion = 16766.634831 eV Total energy + Delta-G solvation = -3057.411460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09421 -40.12516 -36.72095 -35.99639 -34.60152 -33.61604 -32.49559 -31.31699 -28.40403 -27.61276 -26.41480 -24.03110 -22.98796 -21.81962 -21.67755 -21.24990 -18.41480 -18.13165 -17.29575 -17.10602 -16.75035 -16.49781 -16.46497 -15.69348 -15.48103 -14.84336 -14.58335 -14.46772 -14.14078 -14.00286 -13.74732 -13.58525 -13.44287 -13.25955 -13.07303 -12.91138 -12.77506 -12.36989 -12.14894 -12.11613 -11.90740 -11.86020 -11.36558 -11.35401 -11.18205 -10.84614 -10.53739 -10.14103 -9.78285 -9.55749 -8.17800 -6.30137 0.29049 0.45944 1.40659 1.44874 1.52691 1.65322 2.24460 2.42773 2.89763 3.14614 3.64512 3.87152 3.88305 4.02290 4.07912 4.15288 4.18141 4.34290 4.44453 4.58117 4.68557 4.70960 4.73923 4.75877 4.83873 4.85603 4.89722 4.93355 5.11731 5.20488 5.29198 5.34128 5.34271 5.42704 5.55156 5.58101 5.60370 5.69079 5.79104 5.88872 6.08227 6.26072 6.54432 6.88143 7.26035 7.39354 8.94212 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042002 B = 0.002328 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.474283 B =12022.715350 C =12108.390099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.112 4.112 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.119 4.119 8 C 0.164 3.836 9 N -0.713 5.713 10 C 0.512 3.488 11 O -0.587 6.587 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.095 4.095 15 C 0.018 3.982 16 C -0.542 4.542 17 H 0.066 0.934 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.264 1.264 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.060 0.940 40 H -0.016 1.016 41 H -0.015 1.015 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.866 26.261 9.061 31.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.075 4.075 3 C -0.148 4.148 4 C -0.130 4.130 5 C -0.152 4.152 6 C -0.125 4.125 7 C -0.119 4.119 8 C 0.040 3.960 9 N -0.366 5.366 10 C 0.301 3.699 11 O -0.467 6.467 12 C -0.167 4.167 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.189 1.189 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.251 0.749 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.605 25.566 9.759 31.502 hybrid contribution -0.390 -0.628 -0.632 0.972 sum 15.215 24.938 9.127 30.606 Atomic orbital electron populations 1.20912 0.90640 1.03472 1.02877 1.20000 0.96593 0.92678 0.98260 1.21323 0.94762 0.97813 1.00870 1.21529 0.94380 0.99033 0.98035 1.21421 1.01082 0.92150 1.00508 1.21275 0.93231 0.99290 0.98731 1.19681 0.94086 0.93490 1.04646 1.20066 0.97772 0.93794 0.84324 1.45984 1.55984 1.23607 1.10983 1.21200 0.76823 0.80302 0.91623 1.90701 1.58098 1.49978 1.47945 1.21674 1.02852 0.99305 0.92913 1.21247 0.98994 0.96227 0.96945 1.21448 0.99292 0.97280 0.95280 1.19061 0.93980 0.93393 0.95458 1.21725 1.34379 1.06433 0.95468 0.91570 1.26106 0.96332 0.96201 1.01851 1.70127 1.40979 1.12762 1.33962 0.85430 0.78699 0.77477 0.78995 1.18904 1.21090 1.18888 0.90832 0.89951 0.91932 0.84206 0.83797 0.84112 0.85339 0.91587 0.91770 0.74858 0.86330 0.86446 0.93890 0.93810 0.92038 0.92113 0.99746 0.99704 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.26 71.23 0.66 -0.94 16 2 C -0.07 -1.08 5.88 -19.87 -0.12 -1.20 16 3 C -0.13 -1.55 9.70 22.27 0.22 -1.33 16 4 C -0.11 -1.20 10.05 22.27 0.22 -0.98 16 5 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 6 C -0.11 -1.54 9.67 22.27 0.22 -1.32 16 7 C -0.12 -1.90 5.25 -19.87 -0.10 -2.01 16 8 C 0.16 3.21 4.93 85.63 0.42 3.63 16 9 N -0.71 -13.88 4.87 -466.78 -2.27 -16.15 16 10 C 0.51 14.02 7.83 87.66 0.69 14.71 16 11 O -0.59 -22.13 15.98 -3.03 -0.05 -22.18 16 12 C -0.13 -3.19 5.70 29.85 0.17 -3.02 16 13 C -0.10 -3.51 4.50 30.60 0.14 -3.37 16 14 C -0.10 -3.94 5.15 30.60 0.16 -3.78 16 15 C 0.02 1.01 4.97 29.85 0.15 1.16 16 16 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 19 N -0.94 -59.49 13.29 21.44 0.28 -59.21 16 20 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 24 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 26 H 0.06 0.96 6.33 -2.39 -0.02 0.94 16 27 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 28 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 30 H 0.13 1.65 8.04 -2.91 -0.02 1.63 16 31 H 0.07 1.44 7.30 -2.39 -0.02 1.42 16 32 H 0.06 1.38 8.00 -2.39 -0.02 1.36 16 33 H 0.41 5.80 8.46 -92.71 -0.78 5.02 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 37 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -75.51 352.15 3.93 -71.58 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.20 Total: 10.13 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.74 Total: -31.25 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -1.99 Total: -75.36 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.51 3.93 -71.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.833 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds