Wall clock time and date at job start Mon Mar 30 2020 02:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38306 * 119.92832 * 2 1 4 4 C 1.38088 * 120.07012 * 180.20909 * 3 2 1 5 5 C 1.38893 * 119.93011 * 359.51525 * 4 3 2 6 6 N 1.39923 * 120.07601 * 180.23027 * 5 4 3 7 7 C 1.34778 * 120.00479 * 144.91301 * 6 5 4 8 8 O 1.21286 * 119.99786 * 4.62819 * 7 6 5 9 9 C 1.50696 * 119.99929 * 184.62757 * 7 6 5 10 10 C 1.53001 * 109.46971 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47420 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47437 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46972 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00388 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99709 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00041 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47143 * 60.00250 * 17 15 13 19 19 H 1.48501 * 109.47099 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47174 * 299.99811 * 17 15 13 21 21 C 1.38851 * 119.85875 * 0.25129 * 5 4 3 22 22 C 1.38138 * 119.92840 * 0.02562 * 21 5 4 23 23 C 1.50702 * 119.96677 * 179.97438 * 22 21 5 24 24 H 1.09005 * 109.47242 * 270.25353 * 1 2 3 25 25 H 1.08991 * 109.47265 * 30.25070 * 1 2 3 26 26 H 1.08998 * 109.47089 * 150.25821 * 1 2 3 27 27 H 1.07993 * 119.96687 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.03631 * 179.79114 * 4 3 2 29 29 H 0.97004 * 119.99571 * 324.91515 * 6 5 4 30 30 H 1.08998 * 109.47260 * 299.99380 * 9 7 6 31 31 H 1.09002 * 109.47462 * 60.00120 * 9 7 6 32 32 H 1.09005 * 109.47005 * 300.00104 * 10 9 7 33 33 H 1.08997 * 109.47728 * 59.99562 * 10 9 7 34 34 H 1.09000 * 109.46752 * 299.99824 * 11 10 9 35 35 H 1.09005 * 109.46892 * 59.99445 * 11 10 9 36 36 H 1.09003 * 109.46807 * 300.00392 * 12 11 10 37 37 H 1.09002 * 109.46718 * 59.99938 * 12 11 10 38 38 H 0.97008 * 119.99834 * 180.02562 * 16 15 13 39 39 H 1.08008 * 120.03787 * 180.02562 * 21 5 4 40 40 H 1.08992 * 109.47005 * 89.99718 * 23 22 21 41 41 H 1.09000 * 109.47297 * 210.00128 * 23 22 21 42 42 H 1.09006 * 109.47050 * 330.00044 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 -0.0044 5 6 4.2739 0.0001 0.0014 6 7 5.6731 0.0000 0.0019 7 6 6.3468 -0.9519 0.6774 8 8 5.7432 -1.8563 1.2149 9 6 7.8501 -0.8927 0.7650 10 6 8.3607 -2.0823 1.5806 11 6 9.8870 -2.0226 1.6690 12 6 10.3975 -3.2118 2.4851 13 6 11.9009 -3.1532 2.5715 14 1 12.4384 -2.3482 2.0927 15 6 12.5901 -4.1275 3.2620 16 7 11.9355 -5.1082 3.8447 17 14 14.4536 -4.0546 3.3698 18 1 14.8620 -2.7894 4.0312 19 1 14.9492 -5.2096 4.1608 20 1 15.0309 -4.1074 2.0027 21 6 3.5782 -1.2015 0.0063 22 6 2.1968 -1.1982 0.0049 23 6 1.4409 -2.5019 0.0096 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8876 -0.5177 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6553 2.1329 0.0004 28 1 4.1161 2.1384 -0.0078 29 1 6.1583 0.6852 -0.4840 30 1 8.2743 -0.9318 -0.2383 31 1 8.1495 0.0363 1.2502 32 1 7.9364 -2.0437 2.5839 33 1 8.0613 -3.0111 1.0951 34 1 10.3108 -2.0614 0.6655 35 1 10.1867 -1.0937 2.1543 36 1 9.9736 -3.1726 3.4885 37 1 10.0977 -4.1408 2.0000 38 1 12.4205 -5.7935 4.3308 39 1 4.1165 -2.1379 0.0112 40 1 1.2576 -2.8119 1.0383 41 1 0.4892 -2.3720 -0.5058 42 1 2.0291 -3.2648 -0.5005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588148035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:52 Heat of formation + Delta-G solvation = -45.205607 kcal Electronic energy + Delta-G solvation = -19937.000705 eV Core-core repulsion = 16880.566675 eV Total energy + Delta-G solvation = -3056.434031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67248 -38.99100 -35.53326 -34.84342 -32.74665 -32.59329 -31.74346 -29.73452 -27.56651 -26.61219 -25.30096 -22.89104 -22.24830 -20.85483 -20.25137 -19.99170 -17.42453 -16.93287 -16.15348 -16.00229 -15.64809 -15.25991 -14.53756 -14.41374 -14.26207 -13.98569 -13.66319 -13.26793 -12.99277 -12.93609 -12.64088 -12.38209 -12.15872 -12.00438 -11.73893 -11.61792 -11.51597 -11.19263 -10.97683 -10.55141 -10.53876 -10.42744 -10.23989 -9.79909 -9.61820 -9.23652 -9.00122 -8.84714 -8.30200 -8.11675 -5.95022 -3.97697 1.10431 1.26207 2.59018 2.97460 3.35426 3.39821 3.42003 3.60699 4.48800 4.57862 4.64625 4.76718 4.85821 4.96635 5.11815 5.20655 5.25857 5.29844 5.31064 5.40200 5.49287 5.57455 5.58894 5.66985 5.74017 5.83909 5.95534 6.10661 6.18192 6.21862 6.27950 6.38199 6.51167 6.55209 6.81673 6.93723 6.99746 7.18594 7.29329 7.73638 7.89585 8.05980 8.10680 8.47716 9.09756 9.65865 11.16241 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045181 B = 0.002454 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.585552 B =11406.697228 C =11886.070254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.109 4.109 3 C -0.100 4.100 4 C -0.151 4.151 5 C 0.147 3.853 6 N -0.682 5.682 7 C 0.511 3.489 8 O -0.515 6.515 9 C -0.137 4.137 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.119 4.119 22 C -0.069 4.069 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.410 0.590 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.784 13.523 -10.879 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.118 4.118 4 C -0.171 4.171 5 C 0.052 3.948 6 N -0.327 5.327 7 C 0.300 3.700 8 O -0.389 6.389 9 C -0.177 4.177 10 C -0.142 4.142 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.139 4.139 22 C -0.070 4.070 23 C -0.173 4.173 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.246 0.754 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.158 0.842 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.110 12.678 -10.348 27.507 hybrid contribution 1.411 0.477 -0.091 1.493 sum -20.698 13.155 -10.439 26.654 Atomic orbital electron populations 1.20811 0.91391 1.02600 1.02201 1.19725 0.95973 0.92617 1.02651 1.20749 0.93297 0.97447 1.00344 1.20858 0.94518 0.96394 1.05379 1.17781 0.82846 0.93944 1.00183 1.43720 1.04542 1.32130 1.52335 1.21339 0.91123 0.80786 0.76743 1.90704 1.70145 1.33335 1.44687 1.21821 0.89258 1.03025 1.03600 1.21473 0.97455 0.95674 0.99597 1.21651 0.91735 1.00966 1.00430 1.19092 0.95405 0.92310 0.94908 1.21239 0.92257 1.09480 1.32962 0.92802 1.25046 0.98357 0.95532 0.95659 1.69967 1.35512 1.13079 1.34900 0.86664 0.85864 0.77430 0.78049 1.20284 1.21321 1.20288 1.21217 0.93408 0.98153 1.01099 1.19672 0.93174 0.95017 0.99123 1.20860 0.99814 0.94053 1.02607 0.91365 0.91851 0.91263 0.85889 0.85859 0.75440 0.88789 0.88765 0.91701 0.91701 0.93418 0.93432 0.96586 0.96584 0.92979 0.84194 0.90934 0.91191 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.60 36.00 0.35 -0.44 16 2 C -0.11 -1.06 5.88 -104.59 -0.62 -1.68 16 3 C -0.10 -0.92 9.69 -39.61 -0.38 -1.31 16 4 C -0.15 -1.49 9.97 -39.39 -0.39 -1.88 16 5 C 0.15 1.75 6.30 -83.69 -0.53 1.23 16 6 N -0.68 -7.38 5.34 -9.86 -0.05 -7.44 16 7 C 0.51 7.10 7.67 -10.99 -0.08 7.01 16 8 O -0.51 -9.18 13.42 5.55 0.07 -9.11 16 9 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 10 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 11 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.12 -1.56 8.35 -39.39 -0.33 -1.89 16 22 C -0.07 -0.77 5.88 -104.65 -0.62 -1.39 16 23 C -0.12 -1.05 9.60 36.01 0.35 -0.70 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 27 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.41 2.96 8.82 -40.82 -0.36 2.60 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.14 2.08 6.23 -52.48 -0.33 1.76 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 42 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -34.01 347.34 -9.00 -43.02 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.75 Total: -1.03 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.22 Total: -20.75 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.68 Total: -34.29 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.01 -9.00 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.190 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds