Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38306 * 119.92832 * 2 1 4 4 C 1.38088 * 120.07012 * 180.20909 * 3 2 1 5 5 C 1.38893 * 119.93011 * 359.51525 * 4 3 2 6 6 N 1.39923 * 120.07601 * 180.23027 * 5 4 3 7 7 C 1.34778 * 120.00479 * 144.91301 * 6 5 4 8 8 O 1.21286 * 119.99786 * 4.62819 * 7 6 5 9 9 C 1.50696 * 119.99929 * 184.62757 * 7 6 5 10 10 C 1.53001 * 109.46971 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47420 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47437 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46972 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00388 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99709 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00041 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47143 * 60.00250 * 17 15 13 19 19 H 1.48501 * 109.47099 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47174 * 299.99811 * 17 15 13 21 21 C 1.38851 * 119.85875 * 0.25129 * 5 4 3 22 22 C 1.38138 * 119.92840 * 0.02562 * 21 5 4 23 23 C 1.50702 * 119.96677 * 179.97438 * 22 21 5 24 24 H 1.09005 * 109.47242 * 270.25353 * 1 2 3 25 25 H 1.08991 * 109.47265 * 30.25070 * 1 2 3 26 26 H 1.08998 * 109.47089 * 150.25821 * 1 2 3 27 27 H 1.07993 * 119.96687 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.03631 * 179.79114 * 4 3 2 29 29 H 0.97004 * 119.99571 * 324.91515 * 6 5 4 30 30 H 1.08998 * 109.47260 * 299.99380 * 9 7 6 31 31 H 1.09002 * 109.47462 * 60.00120 * 9 7 6 32 32 H 1.09005 * 109.47005 * 300.00104 * 10 9 7 33 33 H 1.08997 * 109.47728 * 59.99562 * 10 9 7 34 34 H 1.09000 * 109.46752 * 299.99824 * 11 10 9 35 35 H 1.09005 * 109.46892 * 59.99445 * 11 10 9 36 36 H 1.09003 * 109.46807 * 300.00392 * 12 11 10 37 37 H 1.09002 * 109.46718 * 59.99938 * 12 11 10 38 38 H 0.97008 * 119.99834 * 180.02562 * 16 15 13 39 39 H 1.08008 * 120.03787 * 180.02562 * 21 5 4 40 40 H 1.08992 * 109.47005 * 89.99718 * 23 22 21 41 41 H 1.09000 * 109.47297 * 210.00128 * 23 22 21 42 42 H 1.09006 * 109.47050 * 330.00044 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 -0.0044 5 6 4.2739 0.0001 0.0014 6 7 5.6731 0.0000 0.0019 7 6 6.3468 -0.9519 0.6774 8 8 5.7432 -1.8563 1.2149 9 6 7.8501 -0.8927 0.7650 10 6 8.3607 -2.0823 1.5806 11 6 9.8870 -2.0226 1.6690 12 6 10.3975 -3.2118 2.4851 13 6 11.9009 -3.1532 2.5715 14 1 12.4384 -2.3482 2.0927 15 6 12.5901 -4.1275 3.2620 16 7 11.9355 -5.1082 3.8447 17 14 14.4536 -4.0546 3.3698 18 1 14.8620 -2.7894 4.0312 19 1 14.9492 -5.2096 4.1608 20 1 15.0309 -4.1074 2.0027 21 6 3.5782 -1.2015 0.0063 22 6 2.1968 -1.1982 0.0049 23 6 1.4409 -2.5019 0.0096 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8876 -0.5177 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6553 2.1329 0.0004 28 1 4.1161 2.1384 -0.0078 29 1 6.1583 0.6852 -0.4840 30 1 8.2743 -0.9318 -0.2383 31 1 8.1495 0.0363 1.2502 32 1 7.9364 -2.0437 2.5839 33 1 8.0613 -3.0111 1.0951 34 1 10.3108 -2.0614 0.6655 35 1 10.1867 -1.0937 2.1543 36 1 9.9736 -3.1726 3.4885 37 1 10.0977 -4.1408 2.0000 38 1 12.4205 -5.7935 4.3308 39 1 4.1165 -2.1379 0.0112 40 1 1.2576 -2.8119 1.0383 41 1 0.4892 -2.3720 -0.5058 42 1 2.0291 -3.2648 -0.5005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = -65.192381 kcal Electronic energy + Delta-G solvation = -19937.867397 eV Core-core repulsion = 16880.566675 eV Total energy + Delta-G solvation = -3057.300722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62457 -39.90499 -36.80014 -36.22966 -34.64387 -33.43150 -32.66461 -31.33155 -28.40595 -27.82414 -26.64407 -24.34238 -23.30177 -21.97708 -21.52179 -21.26088 -18.45989 -18.31316 -17.88907 -17.08384 -16.53062 -16.42883 -16.23744 -15.54613 -15.23474 -15.08508 -14.60109 -14.48683 -14.06271 -13.91745 -13.63795 -13.59649 -13.53286 -13.31418 -12.91500 -12.77887 -12.76260 -12.38115 -12.31408 -12.16983 -12.13918 -11.89251 -11.39296 -11.35812 -11.19193 -11.07568 -10.74705 -10.54844 -9.66661 -8.94289 -8.18966 -6.31312 0.28429 0.44956 1.40020 1.44172 1.51985 1.56330 2.05735 2.41777 2.80720 3.13591 3.67902 3.92273 3.97381 4.00724 4.12472 4.14971 4.27786 4.37703 4.53669 4.62225 4.66629 4.68651 4.81062 4.82203 4.85173 4.88440 4.92429 4.98405 5.12086 5.16975 5.24240 5.31990 5.36222 5.39809 5.45705 5.55442 5.59617 5.76609 5.77313 5.87525 6.13539 6.24653 6.43232 6.87101 7.14334 7.38289 8.93080 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045181 B = 0.002454 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.585552 B =11406.697228 C =11886.070254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.147 4.147 5 C 0.123 3.877 6 N -0.663 5.663 7 C 0.509 3.491 8 O -0.566 6.566 9 C -0.124 4.124 10 C -0.097 4.097 11 C -0.095 4.095 12 C 0.018 3.982 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.148 4.148 22 C -0.087 4.087 23 C -0.116 4.116 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.429 0.571 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.062 0.938 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.263 0.737 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.759 16.629 -12.161 29.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.113 4.113 3 C -0.120 4.120 4 C -0.167 4.167 5 C 0.029 3.971 6 N -0.309 5.309 7 C 0.299 3.701 8 O -0.443 6.443 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.133 4.133 12 C -0.019 4.019 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.168 4.168 22 C -0.087 4.087 23 C -0.172 4.172 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.090 15.838 -11.671 29.581 hybrid contribution 1.301 -0.492 0.308 1.424 sum -20.789 15.346 -11.363 28.228 Atomic orbital electron populations 1.20872 0.89215 1.03874 1.02928 1.20124 0.97651 0.92193 1.01300 1.21193 0.93309 0.98497 0.98966 1.21175 0.95029 0.96459 1.04009 1.17998 0.83169 0.94442 1.01508 1.43466 1.04428 1.31623 1.51425 1.21495 0.91541 0.80614 0.76431 1.90702 1.71077 1.35472 1.47083 1.21689 0.88478 1.01644 1.04553 1.21258 0.95601 0.97355 0.99279 1.21444 0.93327 0.98492 1.00012 1.19060 0.95076 0.93793 0.93979 1.21727 0.93368 1.09905 1.33000 0.91493 1.26114 1.04338 0.94984 0.95088 1.70131 1.37913 1.14020 1.35801 0.85425 0.78668 0.77837 0.78651 1.18874 1.21122 1.18880 1.21182 0.94530 0.97720 1.03350 1.19938 0.92716 0.96602 0.99470 1.20888 1.00529 0.93152 1.02680 0.90770 0.90036 0.90590 0.82834 0.83085 0.73181 0.85768 0.85804 0.93891 0.93786 0.91903 0.91949 0.99785 0.99757 0.92858 0.87207 0.91144 0.88928 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.60 71.23 0.68 -0.58 16 2 C -0.11 -2.00 5.88 -19.84 -0.12 -2.12 16 3 C -0.10 -1.60 9.69 22.25 0.22 -1.38 16 4 C -0.15 -2.55 9.97 22.39 0.22 -2.33 16 5 C 0.12 2.88 6.30 38.15 0.24 3.12 16 6 N -0.66 -13.63 5.34 -303.51 -1.62 -15.24 16 7 C 0.51 14.12 7.67 87.66 0.67 14.79 16 8 O -0.57 -21.37 13.42 -3.05 -0.04 -21.41 16 9 C -0.12 -2.99 5.70 29.85 0.17 -2.82 16 10 C -0.10 -3.48 4.50 30.60 0.14 -3.34 16 11 C -0.10 -3.87 5.15 30.60 0.16 -3.71 16 12 C 0.02 1.00 4.97 29.85 0.15 1.15 16 13 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16 14 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 15 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 16 N -0.94 -59.46 13.29 21.45 0.28 -59.18 16 17 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 C -0.15 -4.06 8.35 22.39 0.19 -3.88 16 22 C -0.09 -1.96 5.88 -19.88 -0.12 -2.08 16 23 C -0.12 -2.15 9.60 71.24 0.68 -1.46 16 24 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 26 H 0.08 0.75 5.94 -2.39 -0.01 0.74 16 27 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 28 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.43 5.12 8.82 -92.71 -0.82 4.30 16 30 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 33 H 0.04 1.73 8.10 -2.39 -0.02 1.72 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 36 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 39 H 0.11 3.63 6.23 -2.91 -0.02 3.61 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.22 5.94 -2.39 -0.01 1.21 16 42 H 0.06 1.14 8.08 -2.38 -0.02 1.13 16 Total: -1.00 -77.93 347.34 4.82 -73.11 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.18 Total: 11.72 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 3.98 Total: -35.98 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.33 Total: -74.42 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.04 Total: -21.41 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -77.93 4.82 -73.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.918 kcal (2) G-P(sol) polarization free energy of solvation -77.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds