Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38302 * 119.92831 * 2 1 4 4 C 1.38090 * 120.07039 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.92867 * 0.06806 * 4 3 2 6 6 N 1.39932 * 120.06674 * 180.23267 * 5 4 3 7 7 C 1.34776 * 120.00082 * 325.26587 * 6 5 4 8 8 O 1.21291 * 119.99973 * 4.51220 * 7 6 5 9 9 C 1.50698 * 120.00043 * 184.50603 * 7 6 5 10 10 C 1.52992 * 109.47414 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47464 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47549 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47499 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99888 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00348 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00259 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46857 * 90.00182 * 17 15 13 19 19 H 1.48497 * 109.47125 * 209.99904 * 17 15 13 20 20 H 1.48493 * 109.47034 * 329.99765 * 17 15 13 21 21 C 1.38849 * 119.86014 * 359.95400 * 5 4 3 22 22 C 1.50699 * 120.03533 * 180.02562 * 21 5 4 23 23 C 1.38133 * 119.92752 * 0.02562 * 21 5 4 24 24 H 1.08997 * 109.46806 * 269.97620 * 1 2 3 25 25 H 1.08998 * 109.47455 * 29.97706 * 1 2 3 26 26 H 1.09004 * 109.47052 * 149.97494 * 1 2 3 27 27 H 1.08007 * 119.96608 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.03463 * 180.02562 * 4 3 2 29 29 H 0.97001 * 119.99516 * 145.27300 * 6 5 4 30 30 H 1.09000 * 109.46900 * 300.00510 * 9 7 6 31 31 H 1.08998 * 109.47021 * 59.99831 * 9 7 6 32 32 H 1.09006 * 109.46982 * 300.00289 * 10 9 7 33 33 H 1.08998 * 109.47676 * 59.99605 * 10 9 7 34 34 H 1.09004 * 109.47510 * 299.99647 * 11 10 9 35 35 H 1.09003 * 109.47268 * 59.99857 * 11 10 9 36 36 H 1.09000 * 109.47247 * 299.99974 * 12 11 10 37 37 H 1.09003 * 109.46656 * 59.99846 * 12 11 10 38 38 H 0.96998 * 119.99661 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.47028 * 90.00120 * 22 21 5 40 40 H 1.09002 * 109.47164 * 210.00232 * 22 21 5 41 41 H 1.09000 * 109.47159 * 330.00074 * 22 21 5 42 42 H 1.08005 * 119.96480 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2738 0.0000 -0.0004 6 7 5.6732 0.0001 0.0051 7 6 6.3496 0.9614 -0.6544 8 8 5.7479 1.8719 -1.1837 9 6 7.8534 0.9049 -0.7341 10 6 8.3673 2.1052 -1.5315 11 6 9.8939 2.0476 -1.6130 12 6 10.4078 3.2477 -2.4110 13 6 11.9116 3.1912 -2.4907 14 1 12.4473 2.3803 -2.0197 15 6 12.6037 4.1748 -3.1649 16 7 11.9513 5.1621 -3.7389 17 14 14.4678 4.1053 -3.2631 18 1 14.8717 3.3406 -4.4703 19 1 15.0109 5.4848 -3.3464 20 1 15.0026 3.4351 -2.0507 21 6 3.5782 -1.2016 -0.0008 22 6 4.3293 -2.5081 -0.0012 23 6 2.1968 -1.1982 -0.0009 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6552 2.1330 -0.0004 28 1 4.1161 2.1383 0.0010 29 1 6.1563 -0.6917 0.4835 30 1 8.2718 0.9315 0.2720 31 1 8.1566 -0.0175 -1.2294 32 1 7.9488 2.0790 -2.5377 33 1 8.0641 3.0275 -1.0360 34 1 10.3128 2.0737 -0.6070 35 1 10.1968 1.1254 -2.1089 36 1 9.9891 3.2213 -3.4170 37 1 10.1049 4.1701 -1.9154 38 1 12.4381 5.8539 -4.2136 39 1 4.5102 -2.8234 1.0263 40 1 3.7389 -3.2665 -0.5154 41 1 5.2820 -2.3793 -0.5149 42 1 1.6551 -2.1325 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588148069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -46.796589 kcal Electronic energy + Delta-G solvation = -20003.729472 eV Core-core repulsion = 16947.226451 eV Total energy + Delta-G solvation = -3056.503021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74922 -38.88971 -35.44294 -34.86530 -32.93489 -32.67817 -31.61346 -29.72624 -27.51173 -26.73389 -25.27484 -23.04612 -22.19115 -20.72411 -20.21462 -20.00059 -17.82312 -16.94023 -16.15623 -15.98160 -15.41323 -15.02893 -14.57548 -14.37533 -14.22977 -13.91209 -13.70155 -13.47757 -13.36605 -12.84714 -12.63789 -12.41938 -12.22627 -11.90075 -11.75179 -11.62445 -11.57121 -11.29537 -10.99248 -10.56614 -10.50861 -10.43213 -10.29655 -9.79366 -9.62230 -9.23934 -8.99416 -8.87912 -8.30595 -8.09496 -5.95345 -3.97924 1.09613 1.25652 2.58955 2.97717 3.33967 3.40010 3.43120 3.60035 4.48662 4.52296 4.63633 4.72414 4.81720 5.01462 5.07344 5.21216 5.26163 5.29537 5.30965 5.35937 5.39936 5.40016 5.60107 5.63920 5.72228 5.80530 5.94528 6.10340 6.14821 6.25481 6.28352 6.39067 6.47111 6.52667 6.81453 6.92785 6.99534 7.18367 7.28579 7.73723 7.89397 8.05787 8.10134 8.47525 9.09752 9.65720 11.15989 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044358 B = 0.002499 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.076903 B =11202.860993 C =11697.249286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C -0.107 4.107 4 C -0.115 4.115 5 C 0.144 3.856 6 N -0.679 5.679 7 C 0.511 3.489 8 O -0.515 6.515 9 C -0.137 4.137 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.105 4.105 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.141 0.859 29 H 0.409 0.591 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.684 -15.610 10.678 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.126 4.126 4 C -0.135 4.135 5 C 0.049 3.951 6 N -0.325 5.325 7 C 0.300 3.700 8 O -0.389 6.389 9 C -0.177 4.177 10 C -0.142 4.142 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.116 4.116 22 C -0.171 4.171 23 C -0.123 4.123 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.245 0.755 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.001 -14.767 10.160 27.610 hybrid contribution 1.291 -0.316 0.097 1.332 sum -19.711 -15.083 10.257 26.856 Atomic orbital electron populations 1.20745 0.91274 1.02640 1.02077 1.19873 0.96035 0.93109 1.01483 1.20944 0.93656 0.97590 1.00413 1.21346 0.94142 0.98035 0.99977 1.17629 0.82786 0.93474 1.01191 1.43715 1.04552 1.31188 1.53057 1.21343 0.91113 0.80879 0.76672 1.90703 1.70290 1.33242 1.44618 1.21821 0.89250 1.03004 1.03643 1.21470 0.97435 0.95537 0.99753 1.21649 0.91726 1.00976 1.00424 1.19098 0.95411 0.92225 0.95023 1.21277 0.92217 1.08765 1.33592 0.92753 1.25050 0.98375 0.95536 0.95667 1.69978 1.35409 1.12502 1.35564 0.86603 0.85888 0.77187 0.78363 1.20708 1.21254 1.19927 1.19675 0.94003 0.93869 1.04016 1.20725 1.00165 0.93971 1.02225 1.20669 0.92616 0.97577 1.01473 0.91409 0.91620 0.91757 0.85874 0.84116 0.75478 0.88790 0.88784 0.91698 0.91684 0.93417 0.93433 0.96582 0.96572 0.93038 0.91184 0.91182 0.91591 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.10 -1.01 5.88 -104.59 -0.62 -1.63 16 3 C -0.11 -1.19 9.69 -39.61 -0.38 -1.57 16 4 C -0.11 -1.50 8.71 -39.39 -0.34 -1.84 16 5 C 0.14 1.72 6.29 -83.69 -0.53 1.19 16 6 N -0.68 -7.36 4.75 -9.86 -0.05 -7.41 16 7 C 0.51 7.06 7.68 -10.99 -0.08 6.97 16 8 O -0.51 -9.14 13.40 5.55 0.07 -9.07 16 9 C -0.14 -1.75 5.70 -27.89 -0.16 -1.91 16 10 C -0.10 -1.83 4.50 -26.74 -0.12 -1.95 16 11 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.11 -1.13 5.90 -104.44 -0.62 -1.74 16 22 C -0.11 -0.80 9.47 36.00 0.34 -0.46 16 23 C -0.10 -0.98 9.35 -39.61 -0.37 -1.35 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.14 2.07 6.19 -52.49 -0.32 1.74 16 29 H 0.41 3.06 7.85 -40.82 -0.32 2.74 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 41 H 0.07 0.46 7.18 -51.93 -0.37 0.09 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -33.90 349.13 -9.09 -42.98 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.89 Total: -1.34 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.20 Total: -20.50 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.69 Total: -34.25 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.90 -9.09 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.812 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds