Wall clock time and date at job start Mon Mar 30 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38302 * 119.92831 * 2 1 4 4 C 1.38090 * 120.07039 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.92867 * 0.06806 * 4 3 2 6 6 N 1.39932 * 120.06674 * 180.23267 * 5 4 3 7 7 C 1.34776 * 120.00082 * 325.26587 * 6 5 4 8 8 O 1.21291 * 119.99973 * 4.51220 * 7 6 5 9 9 C 1.50698 * 120.00043 * 184.50603 * 7 6 5 10 10 C 1.52992 * 109.47414 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47464 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47549 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47499 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99888 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00348 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00259 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46857 * 90.00182 * 17 15 13 19 19 H 1.48497 * 109.47125 * 209.99904 * 17 15 13 20 20 H 1.48493 * 109.47034 * 329.99765 * 17 15 13 21 21 C 1.38849 * 119.86014 * 359.95400 * 5 4 3 22 22 C 1.50699 * 120.03533 * 180.02562 * 21 5 4 23 23 C 1.38133 * 119.92752 * 0.02562 * 21 5 4 24 24 H 1.08997 * 109.46806 * 269.97620 * 1 2 3 25 25 H 1.08998 * 109.47455 * 29.97706 * 1 2 3 26 26 H 1.09004 * 109.47052 * 149.97494 * 1 2 3 27 27 H 1.08007 * 119.96608 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.03463 * 180.02562 * 4 3 2 29 29 H 0.97001 * 119.99516 * 145.27300 * 6 5 4 30 30 H 1.09000 * 109.46900 * 300.00510 * 9 7 6 31 31 H 1.08998 * 109.47021 * 59.99831 * 9 7 6 32 32 H 1.09006 * 109.46982 * 300.00289 * 10 9 7 33 33 H 1.08998 * 109.47676 * 59.99605 * 10 9 7 34 34 H 1.09004 * 109.47510 * 299.99647 * 11 10 9 35 35 H 1.09003 * 109.47268 * 59.99857 * 11 10 9 36 36 H 1.09000 * 109.47247 * 299.99974 * 12 11 10 37 37 H 1.09003 * 109.46656 * 59.99846 * 12 11 10 38 38 H 0.96998 * 119.99661 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.47028 * 90.00120 * 22 21 5 40 40 H 1.09002 * 109.47164 * 210.00232 * 22 21 5 41 41 H 1.09000 * 109.47159 * 330.00074 * 22 21 5 42 42 H 1.08005 * 119.96480 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2738 0.0000 -0.0004 6 7 5.6732 0.0001 0.0051 7 6 6.3496 0.9614 -0.6544 8 8 5.7479 1.8719 -1.1837 9 6 7.8534 0.9049 -0.7341 10 6 8.3673 2.1052 -1.5315 11 6 9.8939 2.0476 -1.6130 12 6 10.4078 3.2477 -2.4110 13 6 11.9116 3.1912 -2.4907 14 1 12.4473 2.3803 -2.0197 15 6 12.6037 4.1748 -3.1649 16 7 11.9513 5.1621 -3.7389 17 14 14.4678 4.1053 -3.2631 18 1 14.8717 3.3406 -4.4703 19 1 15.0109 5.4848 -3.3464 20 1 15.0026 3.4351 -2.0507 21 6 3.5782 -1.2016 -0.0008 22 6 4.3293 -2.5081 -0.0012 23 6 2.1968 -1.1982 -0.0009 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6552 2.1330 -0.0004 28 1 4.1161 2.1383 0.0010 29 1 6.1563 -0.6917 0.4835 30 1 8.2718 0.9315 0.2720 31 1 8.1566 -0.0175 -1.2294 32 1 7.9488 2.0790 -2.5377 33 1 8.0641 3.0275 -1.0360 34 1 10.3128 2.0737 -0.6070 35 1 10.1968 1.1254 -2.1089 36 1 9.9891 3.2213 -3.4170 37 1 10.1049 4.1701 -1.9154 38 1 12.4381 5.8539 -4.2136 39 1 4.5102 -2.8234 1.0263 40 1 3.7389 -3.2665 -0.5154 41 1 5.2820 -2.3793 -0.5149 42 1 1.6551 -2.1325 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:54 Heat of formation + Delta-G solvation = -66.294513 kcal Electronic energy + Delta-G solvation = -20004.574965 eV Core-core repulsion = 16947.226451 eV Total energy + Delta-G solvation = -3057.348514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69489 -39.82222 -36.75321 -36.17595 -34.64196 -33.67676 -32.56547 -31.31630 -28.17703 -27.96201 -26.65353 -24.39774 -23.41112 -21.86407 -21.43110 -21.20910 -18.73863 -18.40348 -17.94033 -17.07390 -16.52297 -16.28206 -15.99230 -15.56014 -15.22534 -14.87466 -14.65439 -14.51599 -14.12757 -14.01486 -13.78876 -13.60788 -13.40145 -13.29492 -12.90172 -12.82075 -12.66269 -12.35561 -12.32930 -12.17453 -12.14653 -12.02587 -11.39583 -11.35979 -11.22018 -11.10019 -10.74171 -10.55374 -9.67907 -8.92887 -8.19069 -6.31255 0.27043 0.43669 1.40145 1.42510 1.53561 1.56346 2.05465 2.41752 2.79294 3.13664 3.68998 3.88372 3.93427 4.00992 4.06623 4.12709 4.37308 4.40757 4.51989 4.64786 4.66668 4.72362 4.81334 4.82085 4.84048 4.87604 4.88357 5.03980 5.12091 5.17238 5.28497 5.32448 5.36420 5.39081 5.47719 5.55443 5.58546 5.69670 5.77601 5.87819 6.11629 6.24788 6.41696 6.87428 7.13309 7.38402 8.93228 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044358 B = 0.002499 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.076903 B =11202.860993 C =11697.249286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.105 4.105 3 C -0.124 4.124 4 C -0.142 4.142 5 C 0.118 3.882 6 N -0.660 5.660 7 C 0.509 3.491 8 O -0.565 6.565 9 C -0.125 4.125 10 C -0.097 4.097 11 C -0.095 4.095 12 C 0.018 3.982 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.009 4.009 16 N -0.938 5.938 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.259 1.259 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.109 4.109 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.112 0.888 29 H 0.427 0.573 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.062 0.938 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.263 0.737 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.412 -18.922 11.928 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.162 4.162 5 C 0.024 3.976 6 N -0.307 5.307 7 C 0.299 3.701 8 O -0.443 6.443 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.133 4.133 12 C -0.019 4.019 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.183 1.183 21 C -0.113 4.113 22 C -0.170 4.170 23 C -0.127 4.127 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.130 0.870 29 H 0.266 0.734 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.736 -18.135 11.447 29.831 hybrid contribution 1.094 0.721 -0.290 1.342 sum -19.641 -17.415 11.157 28.522 Atomic orbital electron populations 1.20801 0.89128 1.03522 1.03131 1.20248 0.97668 0.92652 0.99963 1.21110 0.93125 0.98890 1.01113 1.21300 0.95176 0.97689 1.02033 1.17811 0.83118 0.93942 1.02719 1.43452 1.04395 1.30685 1.52152 1.21503 0.91542 0.80698 0.76320 1.90701 1.71219 1.35363 1.47023 1.21692 0.88426 1.01579 1.04697 1.21254 0.95595 0.97277 0.99361 1.21442 0.93302 0.98438 1.00081 1.19066 0.95082 0.93799 0.94002 1.21757 0.93327 1.09171 1.33598 0.91482 1.26115 1.04343 0.95000 0.95103 1.70139 1.37828 1.13452 1.36483 0.85369 0.78702 0.77395 0.79105 1.19702 1.21003 1.18252 1.20042 0.94561 0.94284 1.02365 1.20812 1.00014 0.92507 1.03670 1.21088 0.92636 0.98569 1.00423 0.90148 0.91437 0.90220 0.85278 0.86973 0.73356 0.85757 0.85775 0.93884 0.93773 0.91903 0.91918 0.99782 0.99751 0.92873 0.89270 0.89806 0.91442 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.90 5.88 -19.84 -0.12 -2.01 16 3 C -0.12 -2.83 9.69 22.25 0.22 -2.61 16 4 C -0.14 -3.91 8.71 22.39 0.19 -3.72 16 5 C 0.12 2.79 6.29 38.15 0.24 3.03 16 6 N -0.66 -13.65 4.75 -303.50 -1.44 -15.09 16 7 C 0.51 14.07 7.68 87.66 0.67 14.74 16 8 O -0.57 -21.28 13.40 -3.06 -0.04 -21.32 16 9 C -0.12 -2.98 5.70 29.84 0.17 -2.81 16 10 C -0.10 -3.46 4.50 30.59 0.14 -3.32 16 11 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 12 C 0.02 0.97 4.97 29.85 0.15 1.12 16 13 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 14 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 15 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 16 N -0.94 -59.43 13.29 21.45 0.28 -59.15 16 17 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 21 C -0.11 -1.98 5.90 -19.74 -0.12 -2.10 16 22 C -0.11 -1.22 9.47 71.24 0.67 -0.55 16 23 C -0.11 -1.78 9.35 22.25 0.21 -1.57 16 24 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 26 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 27 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.11 3.68 6.19 -2.91 -0.02 3.66 16 29 H 0.43 5.36 7.85 -92.71 -0.73 4.63 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 33 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 34 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 41 H 0.07 0.72 7.18 -2.39 -0.02 0.71 16 42 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -77.54 349.13 5.09 -72.45 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.27 Total: 11.41 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 3.99 Total: -35.26 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.16 Total: -74.24 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -77.54 5.09 -72.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.158 kcal (2) G-P(sol) polarization free energy of solvation -77.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds