Wall clock time and date at job start Mon Mar 30 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38303 * 119.96875 * 2 1 4 4 C 1.38259 * 120.14064 * 180.27707 * 3 2 1 5 5 C 1.38129 * 120.07205 * 359.45145 * 4 3 2 6 6 C 1.38852 * 119.92865 * 0.27233 * 5 4 3 7 7 N 1.39926 * 120.07047 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99900 * 325.29036 * 7 6 5 9 9 O 1.21283 * 119.99536 * 4.49978 * 8 7 6 10 10 C 1.50702 * 119.99842 * 184.49427 * 8 7 6 11 11 C 1.52997 * 109.46610 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46923 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47449 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47462 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99892 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47341 * 60.00260 * 18 16 14 20 20 H 1.48502 * 109.47309 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47247 * 299.99813 * 18 16 14 22 22 C 1.38098 * 119.96107 * 179.72987 * 2 1 3 23 23 C 1.50700 * 120.03871 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.46803 * 270.27533 * 1 2 3 25 25 H 1.08998 * 109.46724 * 30.27309 * 1 2 3 26 26 H 1.09002 * 109.47303 * 150.27269 * 1 2 3 27 27 H 1.08000 * 119.92652 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.95926 * 179.72213 * 4 3 2 29 29 H 1.08001 * 120.03780 * 180.29949 * 5 4 3 30 30 H 0.96999 * 120.00476 * 145.29320 * 7 6 5 31 31 H 1.08998 * 109.47131 * 299.99760 * 10 8 7 32 32 H 1.08997 * 109.46824 * 60.00039 * 10 8 7 33 33 H 1.08995 * 109.47859 * 300.00041 * 11 10 8 34 34 H 1.09005 * 109.47444 * 60.00620 * 11 10 8 35 35 H 1.09004 * 109.47221 * 300.00146 * 12 11 10 36 36 H 1.08996 * 109.47081 * 60.00048 * 12 11 10 37 37 H 1.08996 * 109.47119 * 300.00551 * 13 12 11 38 38 H 1.09004 * 109.46783 * 60.00196 * 13 12 11 39 39 H 0.96999 * 120.00070 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47331 * 269.98791 * 23 22 2 41 41 H 1.09006 * 109.46768 * 29.98581 * 23 22 2 42 42 H 1.08997 * 109.46921 * 149.97932 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5804 1.2023 -0.0058 5 6 4.2762 0.0090 -0.0001 6 6 3.5856 -1.1956 0.0056 7 7 4.2874 -2.4061 0.0108 8 6 5.4553 -2.5108 -0.6539 9 8 5.9386 -1.5350 -1.1879 10 6 6.1604 -3.8403 -0.7334 11 6 7.4528 -3.6847 -1.5372 12 6 8.1691 -5.0344 -1.6174 13 6 9.4619 -4.8788 -2.4207 14 6 10.1671 -6.2082 -2.5003 15 1 9.7364 -7.0771 -2.0250 16 6 11.3620 -6.3152 -3.1798 17 7 11.8866 -5.2570 -3.7581 18 14 12.2357 -7.9633 -3.2789 19 1 11.3527 -8.9522 -3.9480 20 1 13.4905 -7.8122 -4.0585 21 1 12.5588 -8.4355 -1.9086 22 6 2.1967 -1.1964 0.0056 23 6 1.4432 -2.5015 0.0112 24 1 -0.3633 0.0049 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6562 2.1324 0.0004 28 1 4.1169 2.1395 -0.0103 29 1 5.3562 0.0129 0.0002 30 1 3.9335 -3.1699 0.4927 31 1 6.3980 -4.1863 0.2726 32 1 5.5122 -4.5666 -1.2237 33 1 7.2157 -3.3385 -2.5432 34 1 8.1009 -2.9586 -1.0464 35 1 8.4064 -5.3802 -0.6113 36 1 7.5214 -5.7609 -2.1080 37 1 9.2251 -4.5327 -3.4268 38 1 10.1095 -4.1524 -1.9297 39 1 12.7274 -5.3322 -4.2359 40 1 1.2613 -2.8117 1.0402 41 1 0.4908 -2.3733 -0.5034 42 1 2.0323 -3.2633 -0.4993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588148762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:58 Heat of formation + Delta-G solvation = -43.483042 kcal Electronic energy + Delta-G solvation = -20094.751577 eV Core-core repulsion = 17038.392243 eV Total energy + Delta-G solvation = -3056.359335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77942 -38.94580 -35.28066 -34.80904 -33.56747 -32.65726 -31.15191 -29.62701 -27.60829 -26.59148 -25.65670 -23.13542 -21.52828 -21.34352 -20.00574 -19.96191 -17.64112 -16.75717 -16.16201 -16.00269 -15.97208 -15.23571 -14.64178 -14.48398 -14.18612 -13.93755 -13.66485 -13.19190 -13.13380 -12.85617 -12.64434 -12.41553 -12.23007 -11.99312 -11.73736 -11.63375 -11.56319 -11.20221 -10.97876 -10.55518 -10.54019 -10.43043 -10.36549 -9.79414 -9.62048 -9.23778 -9.00227 -8.71267 -8.30255 -8.19835 -5.95063 -3.97770 1.13054 1.23109 2.59278 2.96727 3.35348 3.39788 3.41921 3.61747 4.48794 4.53714 4.63480 4.72949 4.80721 4.87923 5.14060 5.19837 5.22103 5.30030 5.32851 5.35616 5.40149 5.50867 5.54025 5.58193 5.66826 5.80031 5.99226 6.10257 6.15533 6.27035 6.30416 6.42393 6.44599 6.52475 6.81427 6.93558 6.99508 7.18369 7.28257 7.73562 7.89504 8.05912 8.09879 8.47621 9.09694 9.65801 11.16230 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.046202 B = 0.002519 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.891925 B =11112.325892 C =11551.902170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.124 4.124 6 C 0.152 3.848 7 N -0.680 5.680 8 C 0.511 3.489 9 O -0.514 6.514 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.117 4.117 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.409 0.591 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.402 9.162 10.713 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.155 4.155 4 C -0.122 4.122 5 C -0.144 4.144 6 C 0.058 3.942 7 N -0.325 5.325 8 C 0.300 3.700 9 O -0.388 6.388 10 C -0.177 4.177 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.120 4.120 23 C -0.174 4.174 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.158 0.842 30 H 0.245 0.755 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.833 9.855 10.184 27.728 hybrid contribution 0.426 -1.206 0.121 1.285 sum -23.406 8.649 10.305 26.997 Atomic orbital electron populations 1.20838 0.91198 1.02842 1.02258 1.19524 0.95779 0.92112 0.99997 1.20968 0.94250 0.97292 1.03024 1.21036 0.94052 0.97813 0.99336 1.21335 1.01447 0.90782 1.00863 1.17616 0.90111 0.86079 1.00407 1.43724 1.23260 1.12792 1.52756 1.21347 0.79801 0.92133 0.76712 1.90703 1.64276 1.39277 1.44515 1.21823 0.99108 0.93140 1.03638 1.21474 0.93270 0.99760 0.99701 1.21649 0.98759 0.93928 1.00432 1.19091 0.90739 0.96895 0.94991 1.21240 1.05919 0.95383 1.33405 0.92807 1.25044 0.97447 0.96457 0.95638 1.69964 1.19426 1.28770 1.35297 0.86665 0.78947 0.84338 0.78060 1.20284 1.21320 1.20288 1.19502 0.91640 0.95676 1.05155 1.20793 1.00303 0.94039 1.02228 0.91195 0.91593 0.91202 0.86199 0.85816 0.84213 0.75474 0.88783 0.88781 0.91689 0.91685 0.93424 0.93430 0.96585 0.96584 0.92974 0.91196 0.90798 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.60 36.01 0.35 -0.39 16 2 C -0.07 -0.69 5.88 -104.65 -0.62 -1.31 16 3 C -0.14 -1.32 9.70 -39.55 -0.38 -1.71 16 4 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 5 C -0.12 -1.62 8.70 -39.39 -0.34 -1.97 16 6 C 0.15 1.83 6.29 -83.69 -0.53 1.30 16 7 N -0.68 -7.38 4.75 -9.86 -0.05 -7.43 16 8 C 0.51 7.07 7.67 -10.98 -0.08 6.99 16 9 O -0.51 -9.14 13.40 5.55 0.07 -9.07 16 10 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 11 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 13 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.12 -1.18 5.90 -104.43 -0.62 -1.80 16 23 C -0.12 -0.84 9.07 36.01 0.33 -0.51 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 26 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.14 2.06 6.20 -52.49 -0.33 1.73 16 30 H 0.41 3.08 7.85 -40.82 -0.32 2.76 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.45 5.95 -51.93 -0.31 0.15 16 42 H 0.06 0.46 7.17 -51.93 -0.37 0.08 16 LS Contribution 344.73 15.07 5.20 5.20 Total: -1.00 -33.94 344.73 -8.99 -42.93 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.67 Total: -1.09 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.26 Total: -20.60 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.69 Total: -34.28 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.94 -8.99 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.552 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds