Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38303 * 119.96875 * 2 1 4 4 C 1.38259 * 120.14064 * 180.27707 * 3 2 1 5 5 C 1.38129 * 120.07205 * 359.45145 * 4 3 2 6 6 C 1.38852 * 119.92865 * 0.27233 * 5 4 3 7 7 N 1.39926 * 120.07047 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99900 * 325.29036 * 7 6 5 9 9 O 1.21283 * 119.99536 * 4.49978 * 8 7 6 10 10 C 1.50702 * 119.99842 * 184.49427 * 8 7 6 11 11 C 1.52997 * 109.46610 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46923 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47449 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47462 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99892 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47341 * 60.00260 * 18 16 14 20 20 H 1.48502 * 109.47309 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47247 * 299.99813 * 18 16 14 22 22 C 1.38098 * 119.96107 * 179.72987 * 2 1 3 23 23 C 1.50700 * 120.03871 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.46803 * 270.27533 * 1 2 3 25 25 H 1.08998 * 109.46724 * 30.27309 * 1 2 3 26 26 H 1.09002 * 109.47303 * 150.27269 * 1 2 3 27 27 H 1.08000 * 119.92652 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.95926 * 179.72213 * 4 3 2 29 29 H 1.08001 * 120.03780 * 180.29949 * 5 4 3 30 30 H 0.96999 * 120.00476 * 145.29320 * 7 6 5 31 31 H 1.08998 * 109.47131 * 299.99760 * 10 8 7 32 32 H 1.08997 * 109.46824 * 60.00039 * 10 8 7 33 33 H 1.08995 * 109.47859 * 300.00041 * 11 10 8 34 34 H 1.09005 * 109.47444 * 60.00620 * 11 10 8 35 35 H 1.09004 * 109.47221 * 300.00146 * 12 11 10 36 36 H 1.08996 * 109.47081 * 60.00048 * 12 11 10 37 37 H 1.08996 * 109.47119 * 300.00551 * 13 12 11 38 38 H 1.09004 * 109.46783 * 60.00196 * 13 12 11 39 39 H 0.96999 * 120.00070 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47331 * 269.98791 * 23 22 2 41 41 H 1.09006 * 109.46768 * 29.98581 * 23 22 2 42 42 H 1.08997 * 109.46921 * 149.97932 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5804 1.2023 -0.0058 5 6 4.2762 0.0090 -0.0001 6 6 3.5856 -1.1956 0.0056 7 7 4.2874 -2.4061 0.0108 8 6 5.4553 -2.5108 -0.6539 9 8 5.9386 -1.5350 -1.1879 10 6 6.1604 -3.8403 -0.7334 11 6 7.4528 -3.6847 -1.5372 12 6 8.1691 -5.0344 -1.6174 13 6 9.4619 -4.8788 -2.4207 14 6 10.1671 -6.2082 -2.5003 15 1 9.7364 -7.0771 -2.0250 16 6 11.3620 -6.3152 -3.1798 17 7 11.8866 -5.2570 -3.7581 18 14 12.2357 -7.9633 -3.2789 19 1 11.3527 -8.9522 -3.9480 20 1 13.4905 -7.8122 -4.0585 21 1 12.5588 -8.4355 -1.9086 22 6 2.1967 -1.1964 0.0056 23 6 1.4432 -2.5015 0.0112 24 1 -0.3633 0.0049 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6562 2.1324 0.0004 28 1 4.1169 2.1395 -0.0103 29 1 5.3562 0.0129 0.0002 30 1 3.9335 -3.1699 0.4927 31 1 6.3980 -4.1863 0.2726 32 1 5.5122 -4.5666 -1.2237 33 1 7.2157 -3.3385 -2.5432 34 1 8.1009 -2.9586 -1.0464 35 1 8.4064 -5.3802 -0.6113 36 1 7.5214 -5.7609 -2.1080 37 1 9.2251 -4.5327 -3.4268 38 1 10.1095 -4.1524 -1.9297 39 1 12.7274 -5.3322 -4.2359 40 1 1.2613 -2.8117 1.0402 41 1 0.4908 -2.3733 -0.5034 42 1 2.0323 -3.2633 -0.4993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -63.167112 kcal Electronic energy + Delta-G solvation = -20095.605143 eV Core-core repulsion = 17038.392243 eV Total energy + Delta-G solvation = -3057.212900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72005 -39.87745 -36.73727 -36.00875 -34.66077 -34.25727 -32.21130 -31.07575 -28.44457 -27.45449 -27.13381 -24.65415 -22.81904 -22.13565 -21.66286 -20.94340 -18.59256 -18.39942 -17.70302 -17.08084 -16.77983 -16.52385 -16.21971 -15.56980 -15.21666 -15.07990 -14.56621 -14.49255 -13.96633 -13.82383 -13.63874 -13.60065 -13.44527 -13.32076 -12.91871 -12.79132 -12.70855 -12.38135 -12.30549 -12.17397 -12.14533 -11.90396 -11.40322 -11.36075 -11.27279 -11.12815 -10.74687 -10.54624 -9.47951 -9.05780 -8.18769 -6.31114 0.29476 0.41938 1.40208 1.44327 1.52141 1.56364 2.04222 2.41967 2.80672 3.13836 3.68839 3.88951 3.93356 4.00799 4.12532 4.15002 4.25737 4.42652 4.50678 4.65167 4.66522 4.75153 4.78956 4.81094 4.86543 4.88818 4.90711 4.98600 5.11779 5.17121 5.31671 5.34590 5.37266 5.38370 5.50109 5.56184 5.60112 5.69895 5.77624 5.87812 6.12764 6.24856 6.40911 6.87372 7.12592 7.38518 8.93312 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.046202 B = 0.002519 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.891925 B =11112.325892 C =11551.902170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.154 4.154 6 C 0.129 3.871 7 N -0.661 5.661 8 C 0.510 3.490 9 O -0.564 6.564 10 C -0.124 4.124 11 C -0.097 4.097 12 C -0.095 4.095 13 C 0.018 3.982 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.264 1.264 22 C -0.118 4.118 23 C -0.117 4.117 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.427 0.573 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.062 0.938 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.149 7.168 11.974 30.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.156 4.156 4 C -0.135 4.135 5 C -0.174 4.174 6 C 0.035 3.965 7 N -0.307 5.307 8 C 0.300 3.700 9 O -0.442 6.442 10 C -0.164 4.164 11 C -0.135 4.135 12 C -0.132 4.132 13 C -0.019 4.019 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.121 4.121 23 C -0.173 4.173 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.151 0.849 29 H 0.129 0.871 30 H 0.266 0.734 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.632 7.836 11.484 30.042 hybrid contribution 1.228 -0.485 -0.269 1.348 sum -25.403 7.351 11.214 28.725 Atomic orbital electron populations 1.20905 0.88676 1.03889 1.03437 1.19996 0.97636 0.91691 0.98588 1.21303 0.93649 0.98760 1.01914 1.21223 0.95091 0.97563 0.99658 1.21292 1.00396 0.92530 1.03193 1.17812 0.91181 0.85832 1.01689 1.43465 1.22150 1.13237 1.51867 1.21509 0.80354 0.91814 0.76353 1.90701 1.65740 1.40861 1.46905 1.21694 0.96775 0.93241 1.04668 1.21259 0.95385 0.97522 0.99337 1.21441 0.95997 0.95743 1.00068 1.19058 0.93387 0.95467 0.93994 1.21729 1.06453 0.96390 1.33417 0.91481 1.26111 0.98481 1.00853 0.95064 1.70128 1.19990 1.31549 1.36220 0.85427 0.77507 0.78990 0.78672 1.18857 1.21145 1.18876 1.19863 0.90833 0.97497 1.03863 1.20885 1.00454 0.92319 1.03653 0.89785 0.90632 0.90148 0.83792 0.84938 0.87065 0.73363 0.85744 0.85766 0.93870 0.93775 0.91901 0.91919 0.99791 0.99771 0.92863 0.89315 0.89425 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.60 71.24 0.68 -0.39 16 2 C -0.08 -1.31 5.88 -19.88 -0.12 -1.43 16 3 C -0.14 -2.49 9.70 22.29 0.22 -2.28 16 4 C -0.12 -2.64 10.04 22.25 0.22 -2.42 16 5 C -0.15 -4.25 8.70 22.39 0.19 -4.06 16 6 C 0.13 3.07 6.29 38.15 0.24 3.31 16 7 N -0.66 -13.74 4.75 -303.50 -1.44 -15.18 16 8 C 0.51 14.10 7.67 87.66 0.67 14.78 16 9 O -0.56 -21.28 13.40 -3.04 -0.04 -21.32 16 10 C -0.12 -2.97 5.70 29.85 0.17 -2.80 16 11 C -0.10 -3.47 4.50 30.59 0.14 -3.33 16 12 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 13 C 0.02 1.00 4.97 29.85 0.15 1.14 16 14 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 16 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 17 N -0.94 -59.44 13.29 21.45 0.28 -59.16 16 18 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.12 -2.17 5.90 -19.74 -0.12 -2.28 16 23 C -0.12 -1.30 9.07 71.24 0.65 -0.65 16 24 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 26 H 0.08 0.61 5.94 -2.39 -0.01 0.60 16 27 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.11 3.65 6.20 -2.91 -0.02 3.63 16 30 H 0.43 5.42 7.85 -92.71 -0.73 4.69 16 31 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.04 1.73 8.10 -2.38 -0.02 1.71 16 35 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H -0.02 -0.98 8.14 -2.38 -0.02 -0.99 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 0.75 5.95 -2.38 -0.01 0.74 16 42 H 0.07 0.73 7.17 -2.39 -0.02 0.71 16 Total: -1.00 -77.66 344.73 5.06 -72.61 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.28 Total: 11.48 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.95 Total: -35.34 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.16 Total: -74.34 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -77.66 5.06 -72.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.439 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds