Wall clock time and date at job start Mon Mar 30 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 N 1.46507 * 109.46939 * 270.21609 * 7 6 5 9 9 C 1.34773 * 119.99815 * 180.02562 * 8 7 6 10 10 O 1.21273 * 120.00265 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99713 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.47383 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47444 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.47448 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47517 * 179.97438 * 14 13 12 16 16 H 1.08012 * 119.99938 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00000 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46906 * 90.00721 * 19 17 15 21 21 H 1.48506 * 109.46955 * 210.00220 * 19 17 15 22 22 H 1.48498 * 109.47160 * 330.00282 * 19 17 15 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 0.97000 * 119.99528 * 359.97438 * 8 7 6 33 33 H 1.08997 * 109.47499 * 299.99937 * 11 9 8 34 34 H 1.09000 * 109.47199 * 59.99747 * 11 9 8 35 35 H 1.09010 * 109.46809 * 300.00058 * 12 11 9 36 36 H 1.09000 * 109.47086 * 59.99767 * 12 11 9 37 37 H 1.08997 * 109.47282 * 299.99932 * 13 12 11 38 38 H 1.09001 * 109.47501 * 60.00236 * 13 12 11 39 39 H 1.08997 * 109.46981 * 300.00310 * 14 13 12 40 40 H 1.09001 * 109.46419 * 59.99767 * 14 13 12 41 41 H 0.97002 * 119.99967 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 7 4.5783 -2.9250 -1.3818 9 6 5.2403 -4.0728 -1.6281 10 8 5.6343 -4.7554 -0.7064 11 6 5.4911 -4.5080 -3.0489 12 6 6.2561 -5.8330 -3.0491 13 6 6.5112 -6.2745 -4.4915 14 6 7.2768 -7.5992 -4.4917 15 6 7.5276 -8.0345 -5.9124 16 1 7.1763 -7.4267 -6.7333 17 6 8.2062 -9.2078 -6.1644 18 7 8.6343 -9.9475 -5.1649 19 14 8.5163 -9.7477 -7.9256 20 1 9.8104 -9.1896 -8.3937 21 1 8.5655 -11.2306 -7.9875 22 1 7.4198 -9.2520 -8.7957 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 4.2629 -2.3791 -2.1190 33 1 4.5386 -4.6380 -3.5626 34 1 6.0803 -3.7486 -3.5629 35 1 7.2088 -5.7025 -2.5355 36 1 5.6672 -6.5926 -2.5349 37 1 5.5589 -6.4048 -5.0054 38 1 7.1003 -5.5148 -5.0053 39 1 8.2292 -7.4685 -3.9779 40 1 6.6881 -8.3591 -3.9777 41 1 9.1114 -10.7733 -5.3422 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588149505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:01 Heat of formation + Delta-G solvation = -50.524292 kcal Electronic energy + Delta-G solvation = -19514.896237 eV Core-core repulsion = 16458.231571 eV Total energy + Delta-G solvation = -3056.664666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14430 -39.28458 -35.41203 -34.74492 -33.05681 -32.59720 -31.63274 -29.70297 -27.44086 -26.71945 -25.11635 -22.57772 -22.20331 -21.01856 -20.23557 -19.92297 -17.17018 -16.63759 -16.21761 -16.10506 -15.88635 -15.49186 -14.97370 -14.42429 -14.18474 -14.14553 -13.66122 -13.51104 -13.16373 -13.01901 -12.59790 -12.53895 -12.36011 -12.01566 -11.66215 -11.58571 -11.42054 -11.35216 -10.95993 -10.50814 -10.48094 -10.37775 -9.89678 -9.58141 -9.28723 -9.17982 -9.13758 -9.02284 -8.92521 -8.28243 -5.92957 -3.95368 0.85814 0.98904 2.76120 3.07880 3.35554 3.41443 3.44745 3.55863 4.26729 4.40026 4.50765 4.50872 4.73579 4.90135 4.95899 4.99885 5.12702 5.19400 5.31785 5.35453 5.40514 5.42256 5.43897 5.49964 5.67352 5.74720 5.90530 6.05819 6.16869 6.17718 6.22223 6.30453 6.34834 6.58345 6.60125 6.87716 7.05725 7.23275 7.46709 7.76775 7.93136 8.08721 8.29175 8.50540 9.12366 9.68080 11.18356 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.002198 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.140783 B =12735.326954 C =12898.995492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.107 4.107 6 C -0.101 4.101 7 C 0.160 3.840 8 N -0.735 5.735 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.102 4.102 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.400 0.600 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 24.689 11.034 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.126 4.126 6 C -0.102 4.102 7 C 0.037 3.963 8 N -0.388 5.388 9 C 0.299 3.701 10 O -0.411 6.411 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.120 4.120 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.955 23.999 11.760 30.625 hybrid contribution 0.082 0.010 -1.268 1.271 sum -14.873 24.009 10.492 30.128 Atomic orbital electron populations 1.20809 0.91018 1.02894 1.02519 1.19949 0.96236 0.93065 0.99635 1.21099 0.94331 0.97574 1.00397 1.21159 0.94296 0.98061 1.00064 1.21121 1.00116 0.91854 0.99460 1.19911 0.93819 0.94685 1.01758 1.20147 0.99530 0.92330 0.84341 1.46172 1.59779 1.24908 1.07984 1.21131 0.76593 0.79812 0.92549 1.90707 1.50192 1.53514 1.46718 1.21794 1.02952 1.00886 0.92181 1.21451 0.99858 0.93671 0.99145 1.21650 1.00047 1.00036 0.93065 1.19101 0.95131 0.90770 0.96775 1.21285 1.35588 1.06264 0.92648 0.92767 1.25048 0.95928 0.96733 0.96938 1.69975 1.38668 1.14259 1.30559 0.86608 0.78542 0.77686 0.85222 1.20725 1.21273 1.19935 1.21014 0.93406 0.97870 0.99749 0.91012 0.91399 0.91508 0.86047 0.85839 0.85790 0.90719 0.90757 0.76555 0.89154 0.89153 0.91811 0.91807 0.93487 0.93494 0.96585 0.96581 0.93065 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.09 -0.64 5.88 -104.62 -0.62 -1.25 16 3 C -0.12 -0.79 9.70 -39.58 -0.38 -1.17 16 4 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 5 C -0.11 -0.83 9.70 -39.58 -0.38 -1.21 16 6 C -0.10 -0.85 5.25 -104.63 -0.55 -1.40 16 7 C 0.16 1.58 5.80 -5.19 -0.03 1.55 16 8 N -0.73 -7.68 5.55 -61.47 -0.34 -8.02 16 9 C 0.51 7.25 7.83 -10.99 -0.09 7.17 16 10 O -0.54 -9.91 15.98 5.56 0.09 -9.83 16 11 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 12 C -0.10 -1.88 4.50 -26.74 -0.12 -2.00 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.13 9.11 -34.45 -0.31 -15.44 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 19 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.10 -0.81 9.36 -39.58 -0.37 -1.18 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.07 0.28 8.09 -51.92 -0.42 -0.14 16 27 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 28 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 29 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 30 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.40 3.25 8.46 -40.82 -0.35 2.90 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -34.12 356.43 -9.65 -43.77 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.06 Total: -2.36 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -3.42 Total: -18.98 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.40 Total: -35.04 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.12 -9.65 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.755 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds