Wall clock time and date at job start Mon Mar 30 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 N 1.46507 * 109.46939 * 270.21609 * 7 6 5 9 9 C 1.34773 * 119.99815 * 180.02562 * 8 7 6 10 10 O 1.21273 * 120.00265 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99713 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.47383 * 179.97438 * 11 9 8 13 13 C 1.52991 * 109.47444 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.47448 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47517 * 179.97438 * 14 13 12 16 16 H 1.08012 * 119.99938 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00000 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46906 * 90.00721 * 19 17 15 21 21 H 1.48506 * 109.46955 * 210.00220 * 19 17 15 22 22 H 1.48498 * 109.47160 * 330.00282 * 19 17 15 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 0.97000 * 119.99528 * 359.97438 * 8 7 6 33 33 H 1.08997 * 109.47499 * 299.99937 * 11 9 8 34 34 H 1.09000 * 109.47199 * 59.99747 * 11 9 8 35 35 H 1.09010 * 109.46809 * 300.00058 * 12 11 9 36 36 H 1.09000 * 109.47086 * 59.99767 * 12 11 9 37 37 H 1.08997 * 109.47282 * 299.99932 * 13 12 11 38 38 H 1.09001 * 109.47501 * 60.00236 * 13 12 11 39 39 H 1.08997 * 109.46981 * 300.00310 * 14 13 12 40 40 H 1.09001 * 109.46419 * 59.99767 * 14 13 12 41 41 H 0.97002 * 119.99967 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 7 4.5783 -2.9250 -1.3818 9 6 5.2403 -4.0728 -1.6281 10 8 5.6343 -4.7554 -0.7064 11 6 5.4911 -4.5080 -3.0489 12 6 6.2561 -5.8330 -3.0491 13 6 6.5112 -6.2745 -4.4915 14 6 7.2768 -7.5992 -4.4917 15 6 7.5276 -8.0345 -5.9124 16 1 7.1763 -7.4267 -6.7333 17 6 8.2062 -9.2078 -6.1644 18 7 8.6343 -9.9475 -5.1649 19 14 8.5163 -9.7477 -7.9256 20 1 9.8104 -9.1896 -8.3937 21 1 8.5655 -11.2306 -7.9875 22 1 7.4198 -9.2520 -8.7957 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 4.2629 -2.3791 -2.1190 33 1 4.5386 -4.6380 -3.5626 34 1 6.0803 -3.7486 -3.5629 35 1 7.2088 -5.7025 -2.5355 36 1 5.6672 -6.5926 -2.5349 37 1 5.5589 -6.4048 -5.0054 38 1 7.1003 -5.5148 -5.0053 39 1 8.2292 -7.4685 -3.9779 40 1 6.6881 -8.3591 -3.9777 41 1 9.1114 -10.7733 -5.3422 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588149505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:01 Heat of formation + Delta-G solvation = -70.657966 kcal Electronic energy + Delta-G solvation = -19515.769299 eV Core-core repulsion = 16458.231571 eV Total energy + Delta-G solvation = -3057.537728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99807 -40.13452 -36.74333 -36.07908 -34.60634 -33.62508 -32.42891 -31.32426 -28.21350 -27.70250 -26.57238 -24.05367 -22.99548 -21.80446 -21.67876 -21.21266 -18.41935 -18.06830 -17.40586 -17.03989 -16.87116 -16.47696 -16.43218 -15.58940 -15.50935 -14.81900 -14.57980 -14.50032 -14.21711 -13.98982 -13.77557 -13.58309 -13.47868 -13.27215 -12.95809 -12.86058 -12.80387 -12.33899 -12.15094 -12.12318 -11.97850 -11.90388 -11.37094 -11.35710 -11.17575 -10.85102 -10.54606 -10.14939 -9.79682 -9.56345 -8.18174 -6.30358 0.27954 0.44707 1.40524 1.43004 1.54072 1.64547 2.23680 2.42470 2.88958 3.14335 3.61543 3.85221 3.87871 4.03455 4.07530 4.15698 4.23754 4.33814 4.46126 4.57810 4.60565 4.69540 4.73918 4.81431 4.84222 4.85257 4.89457 4.97562 5.12294 5.20172 5.29941 5.33862 5.34062 5.42615 5.53046 5.57929 5.61726 5.67079 5.78850 5.88691 6.07248 6.25885 6.53988 6.88071 7.25445 7.39105 8.94042 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.002198 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.140783 B =12735.326954 C =12898.995492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.108 4.108 7 C 0.162 3.838 8 N -0.714 5.714 9 C 0.511 3.489 10 O -0.588 6.588 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.113 4.113 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.061 0.939 39 H -0.015 1.015 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 27.042 9.288 33.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.109 4.109 7 C 0.039 3.961 8 N -0.367 5.367 9 C 0.300 3.700 10 O -0.468 6.468 11 C -0.167 4.167 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.131 4.131 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.320 26.411 9.995 32.616 hybrid contribution 0.470 -0.676 -0.656 1.053 sum -15.849 25.735 9.340 31.634 Atomic orbital electron populations 1.20845 0.89674 1.03564 1.03088 1.20224 0.97362 0.92905 0.99114 1.21415 0.94497 0.98310 0.99491 1.21428 0.94632 0.98481 0.99351 1.21256 1.00532 0.92011 0.99677 1.19757 0.93970 0.93972 1.03174 1.20110 0.99239 0.93082 0.83643 1.45991 1.58064 1.23685 1.08980 1.21218 0.76358 0.80219 0.92222 1.90697 1.52655 1.55345 1.48108 1.21672 1.04008 0.98648 0.92388 1.21248 0.99370 0.96006 0.96808 1.21449 0.99861 0.96955 0.95056 1.19067 0.94002 0.93355 0.95516 1.21751 1.35680 1.06779 0.93679 0.91569 1.26113 0.95505 0.96822 1.02123 1.70133 1.39465 1.14818 1.33399 0.85368 0.79013 0.77160 0.79005 1.19699 1.20954 1.18308 1.21125 0.93299 0.98516 1.00167 0.90411 0.91275 0.90359 0.84035 0.83935 0.85331 0.91540 0.91672 0.74787 0.86371 0.86358 0.93848 0.93849 0.92066 0.92054 0.99705 0.99704 0.92866 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.01 71.24 0.71 -0.24 16 2 C -0.10 -1.20 5.88 -19.87 -0.12 -1.32 16 3 C -0.12 -1.34 9.70 22.27 0.22 -1.12 16 4 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 5 C -0.12 -1.65 9.70 22.27 0.22 -1.43 16 6 C -0.11 -1.72 5.25 -19.87 -0.10 -1.82 16 7 C 0.16 3.18 5.80 85.63 0.50 3.68 16 8 N -0.71 -14.09 5.55 -466.79 -2.59 -16.68 16 9 C 0.51 14.19 7.83 87.66 0.69 14.88 16 10 O -0.59 -22.38 15.98 -3.01 -0.05 -22.43 16 11 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 12 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 13 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 14 C 0.02 0.99 4.97 29.85 0.15 1.13 16 15 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 16 H 0.07 3.63 7.74 -2.90 -0.02 3.61 16 17 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 18 N -0.94 -59.51 13.29 21.44 0.28 -59.23 16 19 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 C -0.11 -1.66 9.36 22.27 0.21 -1.45 16 24 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 26 H 0.08 0.47 8.09 -2.38 -0.02 0.45 16 27 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 28 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.07 1.42 8.09 -2.38 -0.02 1.40 16 31 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.42 5.80 8.46 -92.71 -0.78 5.01 16 33 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.04 1.74 8.10 -2.38 -0.02 1.73 16 36 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -75.87 356.43 3.72 -72.15 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.20 Total: 9.63 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.85 Total: -30.63 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -2.31 Total: -75.90 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.87 3.72 -72.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.490 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds