Wall clock time and date at job start Mon Mar 30 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38307 * 119.96112 * 2 1 4 4 C 1.38262 * 120.13774 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.07407 * 0.25341 * 4 3 2 6 6 C 1.38853 * 119.92601 * 359.51701 * 5 4 3 7 7 N 1.39929 * 120.07018 * 180.23484 * 6 5 4 8 8 C 1.46496 * 119.99681 * 293.07486 * 7 6 5 9 9 C 1.34773 * 120.00212 * 113.08139 * 7 6 5 10 10 O 1.21286 * 120.00143 * 5.27237 * 9 7 6 11 11 C 1.50697 * 119.99910 * 185.27727 * 9 7 6 12 12 C 1.53002 * 109.47202 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47417 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47417 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47186 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00071 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00104 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99724 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00088 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46788 * 90.00646 * 19 17 15 21 21 H 1.48495 * 109.47073 * 210.00363 * 19 17 15 22 22 H 1.48497 * 109.47385 * 330.00593 * 19 17 15 23 23 C 1.38090 * 119.96839 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47004 * 90.00096 * 1 2 3 25 25 H 1.08995 * 109.46900 * 210.00043 * 1 2 3 26 26 H 1.09000 * 109.47553 * 330.00383 * 1 2 3 27 27 H 1.07998 * 119.93244 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.96378 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.03856 * 179.72196 * 5 4 3 30 30 H 1.09004 * 109.46920 * 90.00399 * 8 7 6 31 31 H 1.09003 * 109.47512 * 210.00270 * 8 7 6 32 32 H 1.09000 * 109.47244 * 330.00740 * 8 7 6 33 33 H 1.08997 * 109.47511 * 299.99521 * 11 9 7 34 34 H 1.09001 * 109.47319 * 59.99916 * 11 9 7 35 35 H 1.08996 * 109.47158 * 299.99983 * 12 11 9 36 36 H 1.09001 * 109.46832 * 59.99887 * 12 11 9 37 37 H 1.09004 * 109.46759 * 299.99860 * 13 12 11 38 38 H 1.09001 * 109.47208 * 60.00122 * 13 12 11 39 39 H 1.08997 * 109.46716 * 300.00281 * 14 13 12 40 40 H 1.09001 * 109.46832 * 59.99892 * 14 13 12 41 41 H 0.97002 * 119.99756 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.03155 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2025 0.0005 5 6 4.2762 0.0093 -0.0042 6 6 3.5857 -1.1953 0.0006 7 7 4.2876 -2.4058 0.0008 8 6 5.0813 -2.7924 -1.1683 9 6 4.2334 -3.2161 1.0764 10 8 3.5020 -2.9436 2.0047 11 6 5.0818 -4.4607 1.1257 12 6 4.8336 -5.1952 2.4447 13 6 5.6944 -6.4591 2.4945 14 6 5.4467 -7.1932 3.8138 15 6 6.2940 -8.4384 3.8626 16 1 6.9446 -8.6817 3.0354 17 6 6.2397 -9.2667 4.9635 18 7 5.4479 -8.9703 5.9709 19 14 7.2906 -10.8098 5.0242 20 1 8.6038 -10.4904 5.6395 21 1 6.6026 -11.8456 5.8359 22 1 7.5009 -11.3201 3.6456 23 6 2.1968 -1.1963 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6560 2.1325 0.0004 28 1 4.1169 2.1399 0.0001 29 1 5.3562 0.0133 -0.0083 30 1 6.0974 -2.4133 -1.0591 31 1 5.1056 -3.8793 -1.2477 32 1 4.6314 -2.3724 -2.0679 33 1 4.8200 -5.1121 0.2919 34 1 6.1343 -4.1860 1.0556 35 1 5.0956 -4.5436 3.2783 36 1 3.7811 -5.4698 2.5151 37 1 5.4318 -7.1105 1.6609 38 1 6.7469 -6.1848 2.4239 39 1 5.7094 -6.5416 4.6471 40 1 4.3941 -7.4674 3.8849 41 1 5.4093 -9.5531 6.7453 42 1 1.6568 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588753376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:36 Heat of formation + Delta-G solvation = -32.865285 kcal Electronic energy + Delta-G solvation = -20216.200728 eV Core-core repulsion = 17160.301814 eV Total energy + Delta-G solvation = -3055.898914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63713 -38.81983 -35.80355 -34.90067 -32.82440 -32.57407 -30.83930 -29.38691 -27.18528 -26.86316 -25.72927 -23.36323 -22.19460 -21.25662 -20.00006 -19.16854 -17.24442 -16.70836 -16.27689 -16.23734 -16.09926 -15.22487 -14.51968 -14.35646 -14.12287 -13.93278 -13.57637 -13.32560 -13.20078 -12.80414 -12.58669 -12.48590 -12.21589 -12.14098 -11.72386 -11.64177 -11.56994 -11.38060 -10.97530 -10.53254 -10.49593 -10.39861 -9.84346 -9.60419 -9.44564 -9.22079 -8.97942 -8.93256 -8.53545 -8.29457 -5.94191 -3.96735 1.05942 1.18376 2.62997 2.79885 3.34687 3.40664 3.43806 3.49794 4.49429 4.58484 4.65575 4.72154 4.83736 4.90020 5.07437 5.09758 5.15249 5.29223 5.29803 5.36322 5.40096 5.40981 5.43104 5.51658 5.66572 5.82478 5.88585 6.13254 6.14332 6.26636 6.29364 6.33280 6.44283 6.55005 6.84348 6.89811 7.01202 7.16634 7.23025 7.75249 7.91281 8.07275 8.17673 8.48929 9.11017 9.66838 11.17180 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.002680 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.143174 B =10444.089223 C =10822.018475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.129 4.129 6 C 0.148 3.852 7 N -0.587 5.587 8 C 0.081 3.919 9 C 0.514 3.486 10 O -0.519 6.519 11 C -0.135 4.135 12 C -0.104 4.104 13 C -0.109 4.109 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 20.312 -17.951 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.148 4.148 6 C 0.058 3.942 7 N -0.319 5.319 8 C -0.062 4.062 9 C 0.304 3.696 10 O -0.392 6.392 11 C -0.174 4.174 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.125 4.125 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.266 20.336 -17.259 27.188 hybrid contribution 0.715 -0.865 0.049 1.124 sum -4.551 19.470 -17.210 26.382 Atomic orbital electron populations 1.20799 0.90917 1.03101 1.02293 1.19816 0.96232 0.92637 0.99158 1.21051 0.94239 0.97479 1.01514 1.20978 0.94203 0.97527 0.99949 1.21195 1.00046 0.91617 1.01963 1.17586 0.90619 0.85360 1.00643 1.45596 1.49923 1.18930 1.17408 1.21879 0.95328 1.01836 0.87113 1.21305 0.82704 0.84741 0.80840 1.90730 1.39195 1.73294 1.36015 1.21835 0.99764 0.93551 1.02281 1.21482 1.01404 0.97252 0.94111 1.21645 0.97697 0.94341 1.01026 1.19095 0.97037 0.94509 0.91099 1.21282 1.24310 1.07453 1.02789 0.92755 1.25047 0.95667 0.98091 0.95794 1.69979 1.38241 1.38104 1.07153 0.86608 0.80436 0.83076 0.77954 1.20708 1.21255 1.19924 1.21137 0.93067 0.98148 1.00116 0.91132 0.91305 0.91385 0.85948 0.85693 0.85903 0.92178 0.90000 0.90974 0.88960 0.88916 0.91764 0.91775 0.93451 0.93454 0.96591 0.96586 0.93044 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.08 -0.81 5.88 -104.65 -0.62 -1.42 16 3 C -0.12 -1.15 9.70 -39.55 -0.38 -1.53 16 4 C -0.11 -0.99 10.04 -39.61 -0.40 -1.39 16 5 C -0.13 -1.37 9.85 -39.39 -0.39 -1.75 16 6 C 0.15 1.83 4.83 -83.69 -0.40 1.43 16 7 N -0.59 -7.04 2.93 -120.83 -0.35 -7.40 16 8 C 0.08 0.62 10.10 59.84 0.60 1.23 16 9 C 0.51 7.75 7.55 -10.99 -0.08 7.66 16 10 O -0.52 -10.02 15.54 5.55 0.09 -9.93 16 11 C -0.13 -1.84 4.38 -27.88 -0.12 -1.96 16 12 C -0.10 -1.90 4.50 -26.73 -0.12 -2.03 16 13 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 19 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.11 -1.29 8.96 -39.39 -0.35 -1.65 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.55 6.48 -51.93 -0.34 0.21 16 32 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 33 H 0.09 1.06 7.24 -51.93 -0.38 0.69 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -34.70 352.51 -8.83 -43.53 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -7.00 Total: -3.66 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.59 Total: -17.85 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.38 Total: -34.39 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.70 -8.83 -43.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588753376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.664 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds