Wall clock time and date at job start Mon Mar 30 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38307 * 119.96112 * 2 1 4 4 C 1.38262 * 120.13774 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.07407 * 0.25341 * 4 3 2 6 6 C 1.38853 * 119.92601 * 359.51701 * 5 4 3 7 7 N 1.39929 * 120.07018 * 180.23484 * 6 5 4 8 8 C 1.46496 * 119.99681 * 293.07486 * 7 6 5 9 9 C 1.34773 * 120.00212 * 113.08139 * 7 6 5 10 10 O 1.21286 * 120.00143 * 5.27237 * 9 7 6 11 11 C 1.50697 * 119.99910 * 185.27727 * 9 7 6 12 12 C 1.53002 * 109.47202 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47417 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47417 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47186 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00071 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00104 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99724 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00088 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46788 * 90.00646 * 19 17 15 21 21 H 1.48495 * 109.47073 * 210.00363 * 19 17 15 22 22 H 1.48497 * 109.47385 * 330.00593 * 19 17 15 23 23 C 1.38090 * 119.96839 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47004 * 90.00096 * 1 2 3 25 25 H 1.08995 * 109.46900 * 210.00043 * 1 2 3 26 26 H 1.09000 * 109.47553 * 330.00383 * 1 2 3 27 27 H 1.07998 * 119.93244 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.96378 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.03856 * 179.72196 * 5 4 3 30 30 H 1.09004 * 109.46920 * 90.00399 * 8 7 6 31 31 H 1.09003 * 109.47512 * 210.00270 * 8 7 6 32 32 H 1.09000 * 109.47244 * 330.00740 * 8 7 6 33 33 H 1.08997 * 109.47511 * 299.99521 * 11 9 7 34 34 H 1.09001 * 109.47319 * 59.99916 * 11 9 7 35 35 H 1.08996 * 109.47158 * 299.99983 * 12 11 9 36 36 H 1.09001 * 109.46832 * 59.99887 * 12 11 9 37 37 H 1.09004 * 109.46759 * 299.99860 * 13 12 11 38 38 H 1.09001 * 109.47208 * 60.00122 * 13 12 11 39 39 H 1.08997 * 109.46716 * 300.00281 * 14 13 12 40 40 H 1.09001 * 109.46832 * 59.99892 * 14 13 12 41 41 H 0.97002 * 119.99756 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.03155 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2025 0.0005 5 6 4.2762 0.0093 -0.0042 6 6 3.5857 -1.1953 0.0006 7 7 4.2876 -2.4058 0.0008 8 6 5.0813 -2.7924 -1.1683 9 6 4.2334 -3.2161 1.0764 10 8 3.5020 -2.9436 2.0047 11 6 5.0818 -4.4607 1.1257 12 6 4.8336 -5.1952 2.4447 13 6 5.6944 -6.4591 2.4945 14 6 5.4467 -7.1932 3.8138 15 6 6.2940 -8.4384 3.8626 16 1 6.9446 -8.6817 3.0354 17 6 6.2397 -9.2667 4.9635 18 7 5.4479 -8.9703 5.9709 19 14 7.2906 -10.8098 5.0242 20 1 8.6038 -10.4904 5.6395 21 1 6.6026 -11.8456 5.8359 22 1 7.5009 -11.3201 3.6456 23 6 2.1968 -1.1963 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6560 2.1325 0.0004 28 1 4.1169 2.1399 0.0001 29 1 5.3562 0.0133 -0.0083 30 1 6.0974 -2.4133 -1.0591 31 1 5.1056 -3.8793 -1.2477 32 1 4.6314 -2.3724 -2.0679 33 1 4.8200 -5.1121 0.2919 34 1 6.1343 -4.1860 1.0556 35 1 5.0956 -4.5436 3.2783 36 1 3.7811 -5.4698 2.5151 37 1 5.4318 -7.1105 1.6609 38 1 6.7469 -6.1848 2.4239 39 1 5.7094 -6.5416 4.6471 40 1 4.3941 -7.4674 3.8849 41 1 5.4093 -9.5531 6.7453 42 1 1.6568 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588753376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:36 Heat of formation + Delta-G solvation = -52.296763 kcal Electronic energy + Delta-G solvation = -20217.043341 eV Core-core repulsion = 17160.301814 eV Total energy + Delta-G solvation = -3056.741526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60850 -39.75218 -36.86833 -36.55039 -34.64924 -33.48149 -32.03125 -30.79811 -28.00742 -27.67292 -27.33629 -24.80304 -23.32761 -22.33778 -21.67081 -20.16305 -18.46076 -18.13893 -17.67623 -17.28811 -17.03406 -16.49714 -16.34089 -15.48095 -15.19723 -14.69536 -14.57213 -14.50747 -14.18206 -14.06747 -13.69400 -13.60572 -13.46436 -13.21539 -13.12687 -12.84039 -12.82213 -12.44413 -12.33781 -12.17268 -12.16620 -12.10311 -11.39144 -11.35479 -11.17031 -10.85339 -10.55309 -10.29066 -9.72653 -9.37888 -8.18864 -6.31185 0.26096 0.39412 1.40331 1.42790 1.51410 1.53856 1.89600 2.41923 2.72474 3.13908 3.61273 3.89750 3.95908 3.99087 4.08375 4.14995 4.19942 4.40360 4.43348 4.54371 4.56894 4.62229 4.71880 4.76955 4.78101 4.84696 4.85561 4.91029 4.93295 5.16052 5.21467 5.31510 5.35138 5.40190 5.46084 5.55322 5.56281 5.67201 5.77261 5.87604 6.08339 6.21879 6.25027 6.87431 7.10293 7.38539 8.93560 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.002680 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.143174 B =10444.089223 C =10822.018475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.126 4.126 4 C -0.106 4.106 5 C -0.137 4.137 6 C 0.122 3.878 7 N -0.579 5.579 8 C 0.071 3.929 9 C 0.509 3.491 10 O -0.576 6.576 11 C -0.122 4.122 12 C -0.096 4.096 13 C -0.094 4.094 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.258 1.258 23 C -0.131 4.131 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.062 0.938 39 H -0.017 1.017 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 21.016 -20.307 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.124 4.124 5 C -0.156 4.156 6 C 0.032 3.968 7 N -0.308 5.308 8 C -0.069 4.069 9 C 0.301 3.699 10 O -0.455 6.455 11 C -0.161 4.161 12 C -0.135 4.135 13 C -0.131 4.131 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.205 4.205 18 N -0.580 5.580 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.182 1.182 23 C -0.151 4.151 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.154 0.846 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.590 21.059 -19.683 29.048 hybrid contribution 0.150 -0.996 0.768 1.266 sum -3.440 20.063 -18.915 27.787 Atomic orbital electron populations 1.20837 0.89505 1.03301 1.03321 1.20144 0.97504 0.92526 0.98654 1.21425 0.94607 0.98031 1.00317 1.21382 0.94450 0.98220 0.98390 1.21407 1.00841 0.91424 1.01974 1.17873 0.90891 0.86094 1.01955 1.45618 1.49387 1.18325 1.17503 1.22209 0.95784 1.03028 0.85895 1.21512 0.82206 0.85287 0.80928 1.90706 1.41683 1.74722 1.38366 1.21715 1.01183 0.93046 1.00184 1.21265 0.99487 0.96320 0.96384 1.21435 0.99026 0.94855 0.97818 1.19057 0.94837 0.94455 0.93529 1.21756 1.24635 1.08146 1.03338 0.91444 1.26113 0.97041 1.02074 0.95265 1.70140 1.40078 1.39755 1.07983 0.85368 0.78380 0.78108 0.78711 1.19690 1.20983 1.18215 1.21188 0.93530 0.98338 1.02052 0.89628 0.92449 0.89807 0.83166 0.82742 0.84567 0.90197 0.88559 0.89696 0.85950 0.86057 0.94031 0.93954 0.91852 0.91895 0.99820 0.99785 0.92859 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 2 C -0.09 -1.78 5.88 -19.88 -0.12 -1.90 16 3 C -0.13 -2.08 9.70 22.29 0.22 -1.86 16 4 C -0.11 -1.72 10.04 22.25 0.22 -1.49 16 5 C -0.14 -2.72 9.85 22.39 0.22 -2.50 16 6 C 0.12 3.00 4.83 38.15 0.18 3.18 16 7 N -0.58 -13.42 2.93 -654.57 -1.92 -15.34 16 8 C 0.07 0.92 10.10 127.77 1.29 2.21 16 9 C 0.51 15.39 7.55 87.66 0.66 16.05 16 10 O -0.58 -23.42 15.54 -3.05 -0.05 -23.47 16 11 C -0.12 -3.16 4.38 29.85 0.13 -3.03 16 12 C -0.10 -3.59 4.50 30.59 0.14 -3.45 16 13 C -0.09 -3.86 5.15 30.59 0.16 -3.71 16 14 C 0.02 1.02 4.97 29.85 0.15 1.17 16 15 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 17 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 18 N -0.94 -59.68 13.29 21.45 0.28 -59.40 16 19 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 C -0.13 -3.34 8.96 22.39 0.20 -3.14 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 26 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.97 6.48 -2.39 -0.02 0.96 16 32 H 0.08 0.91 8.05 -2.39 -0.02 0.89 16 33 H 0.12 2.46 7.24 -2.39 -0.02 2.44 16 34 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.10 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -79.15 352.51 6.18 -72.97 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.97 Total: 8.99 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.86 Total: -30.80 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -1.63 Total: -74.74 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -79.15 6.18 -72.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588753376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.673 kcal (2) G-P(sol) polarization free energy of solvation -79.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds