Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38094 * 119.75653 * 2 1 4 4 C 1.38267 * 119.88938 * 179.97438 * 3 2 1 5 5 C 1.37849 * 119.95205 * 0.13701 * 4 3 2 6 6 C 1.39570 * 120.41792 * 359.95016 * 5 4 3 7 7 C 1.38416 * 119.39345 * 359.78930 * 6 5 4 8 8 C 1.50925 * 122.03176 * 180.76964 * 7 6 5 9 9 C 1.53047 * 109.58994 * 344.31029 * 8 7 6 10 10 C 1.53378 * 107.98203 * 47.30417 * 9 8 7 11 11 N 1.39407 * 117.66217 * 179.71640 * 6 5 4 12 12 C 1.46906 * 110.99989 * 285.34457 * 11 6 5 13 13 C 1.52996 * 109.46768 * 70.23200 * 12 11 6 14 14 O 1.42901 * 109.47240 * 61.06408 * 13 12 11 15 15 C 1.42903 * 114.00054 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46824 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99895 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00041 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47166 * 90.00783 * 20 18 16 22 22 H 1.48503 * 109.47108 * 210.00436 * 20 18 16 23 23 H 1.48506 * 109.47344 * 330.00415 * 20 18 16 24 24 H 1.09004 * 109.47415 * 89.99889 * 1 2 3 25 25 H 1.08999 * 109.46893 * 209.99880 * 1 2 3 26 26 H 1.08998 * 109.47275 * 329.99985 * 1 2 3 27 27 H 1.08002 * 120.05239 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.02533 * 180.11785 * 4 3 2 29 29 H 1.08000 * 119.79384 * 179.97438 * 5 4 3 30 30 H 1.08994 * 109.50287 * 224.25799 * 8 7 6 31 31 H 1.08994 * 109.44259 * 104.32864 * 8 7 6 32 32 H 1.09000 * 109.76943 * 287.66565 * 9 8 7 33 33 H 1.09004 * 109.76606 * 166.93514 * 9 8 7 34 34 H 1.08997 * 109.60728 * 51.48183 * 10 9 8 35 35 H 1.08997 * 109.60682 * 171.81866 * 10 9 8 36 36 H 1.08993 * 109.46929 * 190.23279 * 12 11 6 37 37 H 1.09002 * 109.46874 * 310.23518 * 12 11 6 38 38 H 1.09002 * 109.46991 * 181.05698 * 13 12 11 39 39 H 1.09000 * 109.47499 * 301.06156 * 13 12 11 40 40 H 1.08999 * 109.47139 * 299.99457 * 15 14 13 41 41 H 1.08993 * 109.47350 * 60.00224 * 15 14 13 42 42 H 0.96997 * 120.00146 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1924 1.1989 0.0000 4 6 3.5751 1.2021 0.0005 5 6 4.2661 0.0093 -0.0018 6 6 3.5789 -1.2055 -0.0036 7 6 2.1948 -1.2030 0.0013 8 6 1.3920 -2.4810 0.0168 9 6 2.2932 -3.6577 -0.3647 10 6 3.5870 -3.5473 0.4515 11 7 4.3349 -2.3768 -0.0121 12 6 4.9191 -2.6167 -1.3384 13 6 6.0146 -1.5831 -1.6077 14 8 7.0444 -1.7136 -0.6256 15 6 8.1223 -0.7894 -0.7874 16 6 9.1445 -1.0153 0.2967 17 1 8.9870 -1.7876 1.0350 18 6 10.2814 -0.2367 0.3452 19 7 10.4734 0.7034 -0.5542 20 14 11.5488 -0.5171 1.6885 21 1 12.5498 -1.5112 1.2248 22 1 12.2315 0.7643 2.0002 23 1 10.8728 -1.0273 2.9083 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6493 2.1324 0.0004 28 1 4.1133 2.1384 0.0025 29 1 5.3461 0.0148 -0.0018 30 1 0.5728 -2.4048 -0.6980 31 1 0.9872 -2.6430 1.0158 32 1 2.5240 -3.6153 -1.4291 33 1 1.7906 -4.5970 -0.1337 34 1 3.3444 -3.4315 1.5078 35 1 4.1864 -4.4467 0.3104 36 1 5.3485 -3.6180 -1.3705 37 1 4.1427 -2.5298 -2.0985 38 1 6.4352 -1.7495 -2.5994 39 1 5.5890 -0.5809 -1.5569 40 1 8.5866 -0.9398 -1.7620 41 1 7.7407 0.2293 -0.7198 42 1 11.2730 1.2515 -0.5199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590161681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -21.900878 kcal Electronic energy + Delta-G solvation = -21608.786235 eV Core-core repulsion = 18553.362773 eV Total energy + Delta-G solvation = -3055.423462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65072 -37.35073 -36.41692 -34.26497 -32.66400 -31.44812 -30.23075 -29.05809 -26.80848 -26.66853 -24.54077 -23.08928 -22.39693 -21.96255 -20.65627 -19.11459 -16.52739 -16.35976 -16.12339 -15.87909 -15.42926 -14.92127 -14.51164 -14.18646 -13.93227 -13.87030 -13.61402 -13.28679 -12.97218 -12.78700 -12.62061 -12.35963 -12.13258 -11.86279 -11.67272 -11.50615 -11.19127 -11.11381 -10.84703 -10.73910 -10.55354 -10.52145 -10.33699 -9.96077 -9.04837 -8.99436 -8.76577 -8.36397 -8.06713 -7.61250 -6.06178 -4.07046 1.54204 1.57420 3.33676 3.38584 3.44685 3.81986 4.00939 4.39230 4.68305 4.74291 4.80684 4.92476 4.97717 5.11811 5.30281 5.30399 5.35677 5.40705 5.49505 5.53315 5.55108 5.63203 5.65943 5.74676 5.75355 5.82763 5.86802 6.00741 6.07663 6.12792 6.18682 6.26695 6.33703 6.60911 6.68823 6.80273 7.04275 7.15894 7.25908 7.47726 7.69366 7.85734 8.21584 8.65960 9.07603 9.57758 11.05441 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.004382 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.386964 B = 6388.732377 C = 6988.297623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.120 4.120 6 C 0.121 3.879 7 C -0.128 4.128 8 C -0.073 4.073 9 C -0.159 4.159 10 C 0.058 3.942 11 N -0.484 5.484 12 C 0.069 3.931 13 C 0.052 3.948 14 O -0.378 6.378 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.271 1.271 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.502 -4.196 -1.189 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.158 4.158 4 C -0.127 4.127 5 C -0.139 4.139 6 C 0.024 3.976 7 C -0.131 4.131 8 C -0.110 4.110 9 C -0.198 4.198 10 C -0.069 4.069 11 N -0.200 5.200 12 C -0.056 4.056 13 C -0.026 4.026 14 O -0.298 6.298 15 C 0.119 3.881 16 C -0.548 4.548 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.733 3.267 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.948 -4.189 -0.776 20.398 hybrid contribution 0.241 0.171 -0.092 0.309 sum -19.707 -4.018 -0.869 20.131 Atomic orbital electron populations 1.20785 0.91774 1.02421 1.01865 1.19612 0.95415 0.92447 1.00706 1.20867 0.94317 0.96982 1.03612 1.21036 0.94056 0.98038 0.99535 1.21556 1.01563 0.90757 1.00036 1.18497 0.89526 0.90957 0.98576 1.19752 0.92936 0.94772 1.05603 1.20496 0.97236 0.91569 1.01695 1.22243 0.98076 0.98537 1.00988 1.22232 0.92479 0.92775 0.99444 1.58458 1.33716 1.01557 1.26244 1.22187 0.95417 1.00743 0.87283 1.22566 0.89785 0.97749 0.92460 1.87959 1.31672 1.59913 1.50248 1.20179 0.83677 0.87483 0.96727 1.21061 1.03219 1.18187 1.12357 0.91532 1.24935 0.98067 0.94947 0.96542 1.69967 1.27845 1.21087 1.35056 0.86364 0.80978 0.77477 0.81847 1.20541 1.21141 1.19609 0.91570 0.91711 0.91817 0.86571 0.85941 0.83911 0.90925 0.90876 0.91563 0.90883 0.90304 0.89865 0.89700 0.93626 0.94217 0.93279 0.98021 0.97916 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.21 36.01 0.33 -0.69 16 2 C -0.08 -1.02 5.88 -104.55 -0.61 -1.64 16 3 C -0.14 -1.82 9.69 -39.62 -0.38 -2.20 16 4 C -0.11 -1.62 10.03 -39.71 -0.40 -2.02 16 5 C -0.12 -2.07 7.77 -39.23 -0.30 -2.38 16 6 C 0.12 1.95 5.05 -83.85 -0.42 1.52 16 7 C -0.13 -1.74 5.75 -104.32 -0.60 -2.34 16 8 C -0.07 -0.77 4.54 -27.75 -0.13 -0.90 16 9 C -0.16 -1.64 6.03 -26.51 -0.16 -1.80 16 10 C 0.06 0.74 5.81 -3.88 -0.02 0.72 16 11 N -0.48 -7.85 4.41 -171.28 -0.76 -8.60 16 12 C 0.07 1.08 4.83 -3.82 -0.02 1.06 16 13 C 0.05 1.00 5.33 37.16 0.20 1.20 16 14 O -0.38 -9.23 9.82 -35.23 -0.35 -9.58 16 15 C 0.19 5.37 5.69 36.01 0.20 5.57 16 16 C -0.51 -15.22 9.43 -34.44 -0.32 -15.54 16 17 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 20 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.53 6.72 -51.93 -0.35 0.19 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.14 2.89 5.83 -52.49 -0.31 2.58 16 30 H 0.07 0.67 7.36 -51.93 -0.38 0.29 16 31 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.07 0.71 6.79 -51.93 -0.35 0.36 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.01 8.11 -51.93 -0.42 0.58 16 35 H 0.08 0.98 7.80 -51.93 -0.41 0.58 16 36 H 0.08 1.26 7.76 -51.93 -0.40 0.86 16 37 H 0.05 0.63 7.14 -51.93 -0.37 0.26 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.94 4.92 -51.93 -0.26 0.69 16 40 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 41 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -32.13 330.41 -9.73 -41.87 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.59 Total: -1.47 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.74 Total: -17.90 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.02 Total: -35.05 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.35 Total: -9.58 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.13 -9.73 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590161681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.964 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds