Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38256 * 119.99736 * 2 1 4 4 C 1.38219 * 120.00136 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99514 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99451 * 179.97438 * 5 4 3 7 7 C 1.38208 * 120.00098 * 359.95951 * 5 4 3 8 8 C 1.50700 * 119.99583 * 180.02562 * 7 5 4 9 9 N 1.46897 * 109.47366 * 80.00001 * 8 7 5 10 10 C 1.47899 * 111.00068 * 69.87158 * 9 8 7 11 11 C 1.53997 * 107.05889 * 145.84368 * 10 9 8 12 12 C 1.54593 * 105.13807 * 358.77516 * 11 10 9 13 13 O 1.42904 * 110.72258 * 96.40366 * 12 11 10 14 14 C 1.50705 * 110.72583 * 219.68092 * 12 11 10 15 15 H 1.07993 * 119.99953 * 118.54560 * 14 12 11 16 16 C 1.37878 * 119.99835 * 298.55374 * 14 12 11 17 17 N 1.31514 * 120.00255 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99873 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47038 * 59.99320 * 18 16 14 20 20 H 1.48496 * 109.47302 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46869 * 299.99940 * 18 16 14 22 22 C 1.48538 * 111.00123 * 187.27000 * 9 8 7 23 23 C 1.38210 * 120.00070 * 180.21971 * 2 1 3 24 24 H 1.08998 * 109.47376 * 90.00194 * 1 2 3 25 25 H 1.09004 * 109.46780 * 209.99395 * 1 2 3 26 26 H 1.08993 * 109.47221 * 329.99439 * 1 2 3 27 27 H 1.08003 * 120.00198 * 0.02562 * 3 2 1 28 28 H 1.07993 * 120.00257 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47008 * 269.98008 * 6 5 4 30 30 H 1.09000 * 109.47143 * 29.98053 * 6 5 4 31 31 H 1.09005 * 109.46575 * 149.97797 * 6 5 4 32 32 H 1.09001 * 109.47393 * 319.99908 * 8 7 5 33 33 H 1.09004 * 109.46904 * 199.99648 * 8 7 5 34 34 H 1.09004 * 109.91646 * 26.49394 * 10 9 8 35 35 H 1.08998 * 109.92144 * 265.19786 * 10 9 8 36 36 H 1.09004 * 110.30998 * 117.69119 * 11 10 9 37 37 H 1.08998 * 110.30811 * 239.85930 * 11 10 9 38 38 H 0.96700 * 114.00523 * 61.45046 * 13 12 11 39 39 H 0.96994 * 120.00103 * 180.02562 * 17 16 14 40 40 H 1.09007 * 110.66246 * 318.71191 * 22 9 8 41 41 H 1.08993 * 110.66671 * 81.67342 * 22 9 8 42 42 H 1.07997 * 120.00527 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 6 3.5807 -1.1969 -0.0013 8 6 4.3343 -2.5019 -0.0019 9 7 4.7883 -2.8059 1.3617 10 6 3.6465 -3.1523 2.2356 11 6 4.1463 -4.2148 3.2320 12 6 5.6222 -4.4666 2.8470 13 8 6.4981 -3.6878 3.6646 14 6 5.9575 -5.9323 2.9496 15 1 6.2737 -6.4766 2.0721 16 6 5.8604 -6.5784 4.1638 17 7 5.4757 -5.9155 5.2325 18 14 6.2753 -8.3953 4.2908 19 1 7.6865 -8.6105 3.8816 20 1 6.0924 -8.8479 5.6932 21 1 5.3773 -9.1716 3.3985 22 6 5.6817 -3.9924 1.3732 23 6 2.1981 -1.1969 -0.0046 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6582 2.1327 0.0004 28 1 4.1204 2.1327 -0.0010 29 1 6.1412 0.0003 -1.0307 30 1 6.1424 0.8901 0.5109 31 1 6.1424 -0.8899 0.5108 32 1 5.1973 -2.4229 -0.6630 33 1 3.6794 -3.2994 -0.3530 34 1 2.8310 -3.5589 1.6374 35 1 3.3095 -2.2670 2.7748 36 1 4.0807 -3.8371 4.2524 37 1 3.5667 -5.1321 3.1293 38 1 6.4414 -3.8926 4.6080 39 1 5.4077 -6.3699 6.0867 40 1 5.3029 -4.7657 0.7047 41 1 6.6980 -3.7114 1.0975 42 1 1.6582 -2.1322 -0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -32.759429 kcal Electronic energy + Delta-G solvation = -21665.740038 eV Core-core repulsion = 18609.845714 eV Total energy + Delta-G solvation = -3055.894324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.69492 -38.04807 -34.98543 -33.63424 -32.09449 -31.67171 -29.20818 -29.12469 -27.91570 -25.67553 -24.57873 -23.87600 -21.80522 -20.62663 -19.61572 -19.21069 -16.96159 -15.86814 -15.66596 -15.10175 -14.93867 -14.78757 -14.43391 -13.80202 -13.71675 -13.33433 -13.05468 -12.91632 -12.71676 -12.44357 -12.31731 -12.12056 -11.69879 -11.50917 -11.42009 -11.26143 -11.17110 -11.00808 -10.78253 -10.66224 -10.46415 -10.41499 -10.28264 -9.73242 -9.13451 -8.65002 -8.56123 -8.21803 -8.04146 -7.67586 -6.18486 -4.27000 1.51352 1.55535 3.24465 3.29647 3.32306 3.84191 4.31232 4.74698 4.91734 4.97533 5.03504 5.11339 5.18232 5.31667 5.46306 5.55881 5.64165 5.72935 5.75088 5.79751 5.86051 5.88983 5.91540 6.02147 6.08209 6.17058 6.22814 6.29658 6.49864 6.52915 6.60526 6.64790 6.72149 6.91570 6.94262 7.09034 7.20591 7.42971 7.54279 7.59635 7.74175 7.84709 8.21478 8.75294 9.41905 9.58508 10.88425 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.004309 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.537968 B = 6497.134615 C = 6897.029782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.065 4.065 6 C -0.120 4.120 7 C -0.064 4.064 8 C 0.081 3.919 9 N -0.505 5.505 10 C 0.041 3.959 11 C -0.129 4.129 12 C 0.258 3.742 13 O -0.579 6.579 14 C -0.539 4.539 15 H 0.059 0.941 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.052 3.948 23 C -0.110 4.110 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.376 0.624 39 H 0.267 0.733 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 10.605 -9.652 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.066 4.066 6 C -0.177 4.177 7 C -0.064 4.064 8 C -0.047 4.047 9 N -0.228 5.228 10 C -0.087 4.087 11 C -0.168 4.168 12 C 0.218 3.782 13 O -0.387 6.387 14 C -0.577 4.577 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.075 4.075 23 C -0.129 4.129 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.226 0.774 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.249 11.297 -9.855 16.241 hybrid contribution -0.582 -1.947 0.399 2.071 sum -6.831 9.350 -9.455 14.949 Atomic orbital electron populations 1.20741 0.91596 1.02538 1.01854 1.19793 0.95729 0.93177 1.01184 1.20907 0.94174 0.97130 1.01992 1.20984 0.94062 0.97407 1.01616 1.19749 0.96296 0.92202 0.98325 1.20879 0.91112 1.04154 1.01545 1.19691 0.93080 0.94724 0.98933 1.21208 0.97944 0.92896 0.92656 1.64790 1.14761 1.36837 1.06438 1.22885 0.91803 0.98544 0.95452 1.22935 0.99912 0.96011 0.97928 1.19295 0.85260 0.88447 0.85198 1.86140 1.65308 1.64880 1.22398 1.21575 1.46479 0.94507 0.95186 0.92229 1.24989 0.93869 0.98564 0.95629 1.69731 1.46932 1.36768 0.99876 0.86561 0.79109 0.84692 0.77067 1.20065 1.21163 1.20224 1.23205 0.96268 0.89505 0.98559 1.20915 0.93599 0.97351 1.01028 0.91614 0.91710 0.91855 0.86656 0.86447 0.92026 0.92114 0.89167 0.90327 0.94511 0.95489 0.92091 0.91589 0.92203 0.77448 0.92338 0.93753 0.90925 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.10 -1.26 5.88 -104.63 -0.62 -1.88 16 3 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 4 C -0.12 -1.60 9.70 -39.58 -0.38 -1.98 16 5 C -0.07 -0.95 5.88 -104.62 -0.62 -1.57 16 6 C -0.12 -1.63 9.26 36.01 0.33 -1.29 16 7 C -0.06 -0.98 4.94 -104.62 -0.52 -1.50 16 8 C 0.08 1.32 4.02 -4.98 -0.02 1.30 16 9 N -0.50 -9.84 4.60 -231.89 -1.07 -10.91 16 10 C 0.04 0.83 6.00 -2.75 -0.02 0.81 16 11 C -0.13 -3.03 5.26 -25.37 -0.13 -3.16 16 12 C 0.26 6.45 0.95 -89.91 -0.09 6.36 16 13 O -0.58 -15.35 13.09 -35.23 -0.46 -15.82 16 14 C -0.54 -14.45 8.14 -34.44 -0.28 -14.73 16 15 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 16 C 0.07 1.91 5.28 -17.82 -0.09 1.81 16 17 N -0.89 -24.01 11.02 55.43 0.61 -23.40 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.05 1.12 5.67 -1.90 -0.01 1.11 16 23 C -0.11 -1.57 9.12 -39.58 -0.36 -1.94 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 31 H 0.09 1.42 6.35 -51.93 -0.33 1.10 16 32 H 0.08 1.19 7.25 -51.93 -0.38 0.82 16 33 H 0.04 0.58 7.68 -51.93 -0.40 0.19 16 34 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.64 7.99 -51.93 -0.41 1.22 16 37 H 0.06 1.46 7.84 -51.93 -0.41 1.05 16 38 H 0.38 10.08 7.48 45.56 0.34 10.42 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 42 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -27.92 336.53 -9.84 -37.76 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.15 Total: 10.97 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.82 Total: -19.30 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.46 Total: -34.31 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.46 Total: -15.82 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.92 -9.84 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.998 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds