Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38256 * 119.99736 * 2 1 4 4 C 1.38219 * 120.00136 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99514 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99451 * 179.97438 * 5 4 3 7 7 C 1.38208 * 120.00098 * 359.95951 * 5 4 3 8 8 C 1.50700 * 119.99583 * 180.02562 * 7 5 4 9 9 N 1.46897 * 109.47366 * 80.00001 * 8 7 5 10 10 C 1.47899 * 111.00068 * 69.87158 * 9 8 7 11 11 C 1.53997 * 107.05889 * 145.84368 * 10 9 8 12 12 C 1.54593 * 105.13807 * 358.77516 * 11 10 9 13 13 O 1.42904 * 110.72258 * 96.40366 * 12 11 10 14 14 C 1.50705 * 110.72583 * 219.68092 * 12 11 10 15 15 H 1.07993 * 119.99953 * 118.54560 * 14 12 11 16 16 C 1.37878 * 119.99835 * 298.55374 * 14 12 11 17 17 N 1.31514 * 120.00255 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99873 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47038 * 59.99320 * 18 16 14 20 20 H 1.48496 * 109.47302 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46869 * 299.99940 * 18 16 14 22 22 C 1.48538 * 111.00123 * 187.27000 * 9 8 7 23 23 C 1.38210 * 120.00070 * 180.21971 * 2 1 3 24 24 H 1.08998 * 109.47376 * 90.00194 * 1 2 3 25 25 H 1.09004 * 109.46780 * 209.99395 * 1 2 3 26 26 H 1.08993 * 109.47221 * 329.99439 * 1 2 3 27 27 H 1.08003 * 120.00198 * 0.02562 * 3 2 1 28 28 H 1.07993 * 120.00257 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47008 * 269.98008 * 6 5 4 30 30 H 1.09000 * 109.47143 * 29.98053 * 6 5 4 31 31 H 1.09005 * 109.46575 * 149.97797 * 6 5 4 32 32 H 1.09001 * 109.47393 * 319.99908 * 8 7 5 33 33 H 1.09004 * 109.46904 * 199.99648 * 8 7 5 34 34 H 1.09004 * 109.91646 * 26.49394 * 10 9 8 35 35 H 1.08998 * 109.92144 * 265.19786 * 10 9 8 36 36 H 1.09004 * 110.30998 * 117.69119 * 11 10 9 37 37 H 1.08998 * 110.30811 * 239.85930 * 11 10 9 38 38 H 0.96700 * 114.00523 * 61.45046 * 13 12 11 39 39 H 0.96994 * 120.00103 * 180.02562 * 17 16 14 40 40 H 1.09007 * 110.66246 * 318.71191 * 22 9 8 41 41 H 1.08993 * 110.66671 * 81.67342 * 22 9 8 42 42 H 1.07997 * 120.00527 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 6 3.5807 -1.1969 -0.0013 8 6 4.3343 -2.5019 -0.0019 9 7 4.7883 -2.8059 1.3617 10 6 3.6465 -3.1523 2.2356 11 6 4.1463 -4.2148 3.2320 12 6 5.6222 -4.4666 2.8470 13 8 6.4981 -3.6878 3.6646 14 6 5.9575 -5.9323 2.9496 15 1 6.2737 -6.4766 2.0721 16 6 5.8604 -6.5784 4.1638 17 7 5.4757 -5.9155 5.2325 18 14 6.2753 -8.3953 4.2908 19 1 7.6865 -8.6105 3.8816 20 1 6.0924 -8.8479 5.6932 21 1 5.3773 -9.1716 3.3985 22 6 5.6817 -3.9924 1.3732 23 6 2.1981 -1.1969 -0.0046 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6582 2.1327 0.0004 28 1 4.1204 2.1327 -0.0010 29 1 6.1412 0.0003 -1.0307 30 1 6.1424 0.8901 0.5109 31 1 6.1424 -0.8899 0.5108 32 1 5.1973 -2.4229 -0.6630 33 1 3.6794 -3.2994 -0.3530 34 1 2.8310 -3.5589 1.6374 35 1 3.3095 -2.2670 2.7748 36 1 4.0807 -3.8371 4.2524 37 1 3.5667 -5.1321 3.1293 38 1 6.4414 -3.8926 4.6080 39 1 5.4077 -6.3699 6.0867 40 1 5.3029 -4.7657 0.7047 41 1 6.6980 -3.7114 1.0975 42 1 1.6582 -2.1322 -0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -49.290530 kcal Electronic energy + Delta-G solvation = -21666.456880 eV Core-core repulsion = 18609.845714 eV Total energy + Delta-G solvation = -3056.611166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86224 -39.64978 -36.68323 -34.75894 -34.16095 -32.96992 -30.74348 -30.09314 -29.71094 -27.23343 -25.79016 -25.34940 -22.88457 -22.12878 -21.41375 -20.54435 -18.96075 -17.28319 -16.87193 -16.69041 -16.50211 -16.07553 -15.99809 -15.49172 -14.84782 -14.61473 -14.47237 -14.07191 -13.93563 -13.90422 -13.56342 -13.39743 -13.22753 -13.04755 -12.84349 -12.78056 -12.65081 -12.47440 -12.37320 -12.26099 -12.11495 -11.83276 -11.63828 -11.54820 -11.04434 -10.59182 -10.10723 -9.67315 -9.29574 -9.15069 -8.20529 -6.36874 0.48187 0.53432 1.41503 1.42863 1.50363 2.38547 2.77803 3.04220 3.32806 3.80523 3.91399 4.00215 4.07214 4.13274 4.19972 4.22405 4.42324 4.42971 4.44137 4.63564 4.67773 4.74386 4.79664 4.85211 4.86080 4.89269 4.90464 4.98575 5.09751 5.21081 5.24005 5.28460 5.47676 5.49681 5.56054 5.58852 5.73399 5.76278 5.85590 5.93361 6.16393 6.23249 6.29166 6.69291 7.35154 7.48453 8.84744 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.004309 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.537968 B = 6497.134615 C = 6897.029782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.124 4.124 4 C -0.127 4.127 5 C -0.083 4.083 6 C -0.116 4.116 7 C -0.084 4.084 8 C 0.085 3.915 9 N -0.507 5.507 10 C 0.054 3.946 11 C -0.120 4.120 12 C 0.241 3.759 13 O -0.588 6.588 14 C -0.564 4.564 15 H 0.056 0.944 16 C 0.031 3.969 17 N -0.912 5.912 18 Si 0.959 3.041 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.060 3.940 23 C -0.124 4.124 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.370 0.630 39 H 0.268 0.732 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 11.485 -10.707 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.084 4.084 6 C -0.172 4.172 7 C -0.084 4.084 8 C -0.042 4.042 9 N -0.231 5.231 10 C -0.074 4.074 11 C -0.159 4.159 12 C 0.201 3.799 13 O -0.396 6.396 14 C -0.603 4.603 15 H 0.074 0.926 16 C -0.170 4.170 17 N -0.551 5.551 18 Si 0.784 3.216 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.067 4.067 23 C -0.143 4.143 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.219 0.781 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.226 12.186 -10.925 17.890 hybrid contribution -0.303 -2.153 0.716 2.289 sum -7.529 10.033 -10.209 16.173 Atomic orbital electron populations 1.20786 0.89549 1.03262 1.02961 1.20162 0.97348 0.92803 1.00112 1.21284 0.94149 0.98149 1.00652 1.21280 0.94671 0.97676 1.00878 1.19954 0.96768 0.92666 0.98980 1.20822 0.90825 1.03262 1.02315 1.19665 0.93608 0.94335 1.00828 1.21214 0.98538 0.93834 0.90652 1.64737 1.14407 1.35447 1.08530 1.22706 0.92341 0.97355 0.94985 1.22729 0.99188 0.96232 0.97701 1.19555 0.85604 0.87925 0.86779 1.86134 1.66033 1.65266 1.22138 1.21865 1.47227 0.95710 0.95457 0.92610 1.25690 0.93600 1.02415 0.95286 1.69825 1.47022 1.38094 1.00127 0.85608 0.78784 0.80020 0.77173 1.19929 1.20662 1.19647 1.23036 0.96830 0.90438 0.96405 1.21061 0.93362 0.98275 1.01582 0.90226 0.91746 0.90413 0.83948 0.84348 0.90462 0.91156 0.91789 0.89524 0.94125 0.93904 0.92137 0.93687 0.93760 0.78142 0.92241 0.93247 0.91210 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.01 71.24 0.71 -1.13 16 2 C -0.10 -2.42 5.88 -19.87 -0.12 -2.54 16 3 C -0.12 -2.71 9.70 22.27 0.22 -2.50 16 4 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 5 C -0.08 -2.30 5.88 -19.87 -0.12 -2.42 16 6 C -0.12 -3.00 9.26 71.24 0.66 -2.34 16 7 C -0.08 -2.49 4.94 -19.87 -0.10 -2.58 16 8 C 0.09 2.71 4.02 85.56 0.34 3.05 16 9 N -0.51 -19.71 4.60 -887.57 -4.08 -23.79 16 10 C 0.05 2.17 6.00 86.45 0.52 2.69 16 11 C -0.12 -5.73 5.26 31.47 0.17 -5.57 16 12 C 0.24 12.26 0.95 -10.34 -0.01 12.25 16 13 O -0.59 -31.94 13.09 -148.98 -1.95 -33.89 16 14 C -0.56 -30.65 8.14 25.60 0.21 -30.44 16 15 H 0.06 2.99 7.78 -2.91 -0.02 2.96 16 16 C 0.03 1.65 5.28 84.65 0.45 2.09 16 17 N -0.91 -49.61 11.02 21.45 0.24 -49.37 16 18 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.06 2.63 5.67 86.65 0.49 3.12 16 23 C -0.12 -3.37 9.12 22.27 0.20 -3.17 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.10 8.09 -2.38 -0.02 1.08 16 26 H 0.08 1.09 8.08 -2.39 -0.02 1.08 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 31 H 0.06 2.00 6.35 -2.38 -0.02 1.99 16 32 H 0.09 2.58 7.25 -2.39 -0.02 2.56 16 33 H 0.04 1.25 7.68 -2.38 -0.02 1.24 16 34 H 0.04 1.57 7.57 -2.39 -0.02 1.56 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.04 2.30 7.99 -2.39 -0.02 2.28 16 37 H 0.04 2.20 7.84 -2.39 -0.02 2.19 16 38 H 0.37 20.50 7.48 -74.06 -0.55 19.94 16 39 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.05 2.07 7.92 -2.38 -0.02 2.05 16 41 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.12 3.04 8.04 -2.91 -0.02 3.01 16 Total: -1.00 -59.37 336.53 0.52 -58.85 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.44 Total: 36.11 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.84 Total: -32.28 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -3.84 Total: -73.16 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.95 Total: -33.89 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -59.37 0.52 -58.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.558 kcal (2) G-P(sol) polarization free energy of solvation -59.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds