Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 120.00351 * 2 1 4 4 C 1.38211 * 119.99962 * 180.02562 * 3 2 1 5 5 C 1.38257 * 120.00367 * 359.95685 * 4 3 2 6 6 C 1.50691 * 120.00359 * 179.97438 * 5 4 3 7 7 C 1.38214 * 119.99729 * 0.02562 * 5 4 3 8 8 C 1.50702 * 120.00118 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.47011 * 79.99848 * 8 7 5 10 10 C 1.48720 * 111.01412 * 54.49113 * 9 8 7 11 11 C 1.54380 * 104.51798 * 158.96554 * 10 9 8 12 12 C 1.54264 * 105.15118 * 336.27099 * 11 10 9 13 13 O 1.42892 * 110.32452 * 241.05615 * 12 11 10 14 14 C 1.50694 * 110.32580 * 118.84023 * 12 11 10 15 15 H 1.07996 * 120.00120 * 0.38509 * 14 12 11 16 16 C 1.37883 * 119.99926 * 180.38413 * 14 12 11 17 17 N 1.31513 * 119.99677 * 186.83153 * 16 14 12 18 18 Si 1.86797 * 120.00012 * 6.82955 * 16 14 12 19 19 H 1.48493 * 109.47165 * 94.01979 * 18 16 14 20 20 H 1.48502 * 109.47125 * 214.02234 * 18 16 14 21 21 H 1.48498 * 109.47077 * 334.01765 * 18 16 14 22 22 C 1.48558 * 110.99828 * 169.99894 * 9 8 7 23 23 C 1.38213 * 119.99603 * 180.22742 * 2 1 3 24 24 H 1.09003 * 109.47132 * 89.99908 * 1 2 3 25 25 H 1.08992 * 109.47361 * 210.00639 * 1 2 3 26 26 H 1.09000 * 109.46940 * 330.00506 * 1 2 3 27 27 H 1.08003 * 119.99949 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99862 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47557 * 270.02197 * 6 5 4 30 30 H 1.09004 * 109.47482 * 30.02024 * 6 5 4 31 31 H 1.08996 * 109.47323 * 150.02081 * 6 5 4 32 32 H 1.08996 * 109.46711 * 319.99921 * 8 7 5 33 33 H 1.08994 * 109.46929 * 199.99892 * 8 7 5 34 34 H 1.09000 * 110.38979 * 40.24402 * 10 9 8 35 35 H 1.08996 * 110.51110 * 277.74990 * 10 9 8 36 36 H 1.08996 * 110.32647 * 217.32480 * 11 10 9 37 37 H 1.09004 * 110.32083 * 95.21288 * 11 10 9 38 38 H 0.96704 * 113.99889 * 298.53736 * 13 12 11 39 39 H 0.97004 * 119.99578 * 179.97438 * 17 16 14 40 40 H 1.09005 * 110.40831 * 82.18389 * 22 9 8 41 41 H 1.08992 * 110.41532 * 319.74151 * 22 9 8 42 42 H 1.08003 * 120.00368 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 -0.0002 -0.0002 6 6 5.7787 -0.0003 -0.0013 7 6 3.5806 -1.1971 0.0002 8 6 4.3340 -2.5023 0.0000 9 7 4.7877 -2.8060 1.3638 10 6 3.6490 -2.7908 2.3204 11 6 4.1426 -3.6238 3.5228 12 6 5.2427 -4.5426 2.9523 13 8 4.8803 -5.9145 3.1208 14 6 6.5609 -4.2616 3.6263 15 1 6.6237 -3.5066 4.3960 16 6 7.6868 -4.9684 3.2604 17 7 8.8047 -4.8207 3.9372 18 14 7.6242 -6.1357 1.8035 19 1 8.0794 -5.4264 0.5809 20 1 8.5126 -7.2975 2.0614 21 1 6.2309 -6.6116 1.6099 22 6 5.3218 -4.1894 1.4515 23 6 2.1980 -1.1970 -0.0048 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8898 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1326 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.1413 -0.0007 -1.0293 30 1 6.1425 0.8899 0.5119 31 1 6.1424 -0.8900 0.5125 32 1 5.1972 -2.4234 -0.6609 33 1 3.6792 -3.2997 -0.3511 34 1 2.7702 -3.2542 1.8720 35 1 3.4249 -1.7704 2.6312 36 1 3.3263 -4.2194 3.9314 37 1 4.5558 -2.9709 4.2916 38 1 4.7719 -6.1822 4.0438 39 1 9.5967 -5.3183 3.6800 40 1 6.3558 -4.2202 1.1077 41 1 4.7055 -4.8726 0.8672 42 1 1.6580 -2.1323 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = -17.996896 kcal Electronic energy + Delta-G solvation = -21941.258302 eV Core-core repulsion = 18886.004129 eV Total energy + Delta-G solvation = -3055.254173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.84999 -38.32997 -35.32893 -33.75765 -32.29396 -31.83077 -29.58383 -29.17215 -28.12414 -25.70293 -24.59346 -23.83256 -21.93544 -21.17104 -19.78155 -19.25137 -17.04298 -15.98122 -15.78319 -15.46603 -15.23583 -14.72457 -14.42265 -13.92221 -13.71381 -13.54908 -13.08646 -12.99572 -12.78064 -12.69298 -12.45621 -12.30775 -11.96376 -11.78933 -11.65349 -11.55693 -11.35310 -11.03003 -10.86039 -10.75672 -10.60918 -10.21581 -9.99420 -9.81690 -8.97772 -8.74235 -8.61923 -8.33928 -8.25354 -7.85898 -6.09814 -4.16632 1.43681 1.48005 3.35092 3.46174 3.67342 3.76759 4.51525 4.56233 4.82718 4.86285 4.95411 5.12041 5.20442 5.25277 5.34215 5.48239 5.50418 5.52571 5.62198 5.69490 5.74758 5.82179 5.85865 5.90076 5.91654 5.97777 6.12764 6.15939 6.23349 6.26408 6.48534 6.52897 6.56200 6.64528 6.69768 6.86229 6.91127 7.09010 7.14085 7.41464 7.58706 7.69074 8.32726 8.88174 9.03150 9.55474 11.01238 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.005213 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.383322 B = 5370.253905 C = 5787.045130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.122 4.122 5 C -0.062 4.062 6 C -0.124 4.124 7 C -0.071 4.071 8 C 0.078 3.922 9 N -0.487 5.487 10 C 0.043 3.957 11 C -0.139 4.139 12 C 0.218 3.782 13 O -0.581 6.581 14 C -0.534 4.534 15 H 0.076 0.924 16 C 0.084 3.916 17 N -0.891 5.891 18 Si 0.869 3.131 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.226 1.226 22 C 0.048 3.952 23 C -0.110 4.110 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.363 0.637 39 H 0.264 0.736 40 H 0.081 0.919 41 H 0.030 0.970 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.521 8.914 -8.668 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.063 4.063 6 C -0.181 4.181 7 C -0.071 4.071 8 C -0.049 4.049 9 N -0.212 5.212 10 C -0.085 4.085 11 C -0.178 4.178 12 C 0.179 3.821 13 O -0.387 6.387 14 C -0.571 4.571 15 H 0.094 0.906 16 C -0.120 4.120 17 N -0.529 5.529 18 Si 0.697 3.303 19 H -0.216 1.216 20 H -0.226 1.226 21 H -0.149 1.149 22 C -0.079 4.079 23 C -0.129 4.129 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.210 0.790 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.911 9.258 -9.170 18.344 hybrid contribution -0.435 -1.037 -0.393 1.191 sum -13.345 8.221 -9.563 18.361 Atomic orbital electron populations 1.20741 0.91551 1.02523 1.01908 1.19785 0.95736 0.93129 1.01252 1.20928 0.94180 0.97174 1.01705 1.21005 0.94046 0.97475 1.01432 1.19789 0.96451 0.92133 0.97928 1.20928 0.90857 1.04493 1.01821 1.19669 0.93108 0.94620 0.99721 1.21263 0.98105 0.92893 0.92671 1.65465 1.26591 1.25573 1.03550 1.22985 0.91968 0.99765 0.93768 1.22975 0.98414 0.98912 0.97479 1.19698 0.93023 0.78674 0.90741 1.86510 1.92171 1.29401 1.30606 1.21325 0.91119 1.22376 1.22279 0.90598 1.24976 0.95032 0.95698 0.96254 1.69954 1.01664 1.41844 1.39398 0.87105 0.80203 0.80495 0.82525 1.21594 1.22554 1.14880 1.23310 0.99518 0.87054 0.98007 1.20907 0.93479 0.97377 1.01124 0.91582 0.91749 0.91808 0.86569 0.86314 0.91870 0.91962 0.88799 0.89856 0.94426 0.95016 0.91149 0.92534 0.90852 0.79016 0.92670 0.90122 0.95166 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.10 -1.19 5.88 -104.62 -0.62 -1.80 16 3 C -0.12 -1.43 9.70 -39.59 -0.38 -1.81 16 4 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 5 C -0.06 -0.89 5.88 -104.63 -0.62 -1.51 16 6 C -0.12 -1.73 9.26 36.00 0.33 -1.40 16 7 C -0.07 -1.05 4.38 -104.62 -0.46 -1.51 16 8 C 0.08 1.27 4.33 -4.98 -0.02 1.25 16 9 N -0.49 -9.43 4.82 -231.27 -1.12 -10.54 16 10 C 0.04 0.78 5.22 -2.09 -0.01 0.77 16 11 C -0.14 -2.80 6.43 -25.35 -0.16 -2.96 16 12 C 0.22 5.07 0.90 -90.39 -0.08 4.99 16 13 O -0.58 -13.13 10.16 -35.23 -0.36 -13.49 16 14 C -0.53 -14.72 8.82 -34.44 -0.30 -15.02 16 15 H 0.08 2.29 7.60 -52.49 -0.40 1.89 16 16 C 0.08 2.41 5.43 -17.82 -0.10 2.31 16 17 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 18 Si 0.87 21.91 24.05 -169.99 -4.09 17.82 16 19 H -0.29 -7.18 7.09 56.52 0.40 -6.78 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.23 -5.56 5.22 56.52 0.29 -5.27 16 22 C 0.05 1.07 4.16 -2.18 -0.01 1.06 16 23 C -0.11 -1.48 8.70 -39.58 -0.34 -1.83 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.09 1.55 6.35 -51.93 -0.33 1.22 16 32 H 0.08 1.31 7.28 -51.93 -0.38 0.93 16 33 H 0.04 0.59 7.74 -51.93 -0.40 0.19 16 34 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 35 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 36 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 37 H 0.07 1.54 7.42 -51.93 -0.39 1.15 16 38 H 0.36 7.14 9.08 45.56 0.41 7.55 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 1.94 4.85 -51.93 -0.25 1.68 16 41 H 0.03 0.65 7.76 -51.93 -0.40 0.25 16 42 H 0.12 1.45 8.04 -52.48 -0.42 1.03 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -31.00 326.04 -8.65 -39.65 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.98 Total: 8.01 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.79 Total: -20.01 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.34 Total: -36.89 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.36 Total: -13.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.09 Total: 17.82 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.00 -8.65 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.654 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds