Wall clock time and date at job start Mon Mar 30 2020 02:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 120.00351 * 2 1 4 4 C 1.38211 * 119.99962 * 180.02562 * 3 2 1 5 5 C 1.38257 * 120.00367 * 359.95685 * 4 3 2 6 6 C 1.50691 * 120.00359 * 179.97438 * 5 4 3 7 7 C 1.38214 * 119.99729 * 0.02562 * 5 4 3 8 8 C 1.50702 * 120.00118 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.47011 * 79.99848 * 8 7 5 10 10 C 1.48720 * 111.01412 * 54.49113 * 9 8 7 11 11 C 1.54380 * 104.51798 * 158.96554 * 10 9 8 12 12 C 1.54264 * 105.15118 * 336.27099 * 11 10 9 13 13 O 1.42892 * 110.32452 * 241.05615 * 12 11 10 14 14 C 1.50694 * 110.32580 * 118.84023 * 12 11 10 15 15 H 1.07996 * 120.00120 * 0.38509 * 14 12 11 16 16 C 1.37883 * 119.99926 * 180.38413 * 14 12 11 17 17 N 1.31513 * 119.99677 * 186.83153 * 16 14 12 18 18 Si 1.86797 * 120.00012 * 6.82955 * 16 14 12 19 19 H 1.48493 * 109.47165 * 94.01979 * 18 16 14 20 20 H 1.48502 * 109.47125 * 214.02234 * 18 16 14 21 21 H 1.48498 * 109.47077 * 334.01765 * 18 16 14 22 22 C 1.48558 * 110.99828 * 169.99894 * 9 8 7 23 23 C 1.38213 * 119.99603 * 180.22742 * 2 1 3 24 24 H 1.09003 * 109.47132 * 89.99908 * 1 2 3 25 25 H 1.08992 * 109.47361 * 210.00639 * 1 2 3 26 26 H 1.09000 * 109.46940 * 330.00506 * 1 2 3 27 27 H 1.08003 * 119.99949 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99862 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47557 * 270.02197 * 6 5 4 30 30 H 1.09004 * 109.47482 * 30.02024 * 6 5 4 31 31 H 1.08996 * 109.47323 * 150.02081 * 6 5 4 32 32 H 1.08996 * 109.46711 * 319.99921 * 8 7 5 33 33 H 1.08994 * 109.46929 * 199.99892 * 8 7 5 34 34 H 1.09000 * 110.38979 * 40.24402 * 10 9 8 35 35 H 1.08996 * 110.51110 * 277.74990 * 10 9 8 36 36 H 1.08996 * 110.32647 * 217.32480 * 11 10 9 37 37 H 1.09004 * 110.32083 * 95.21288 * 11 10 9 38 38 H 0.96704 * 113.99889 * 298.53736 * 13 12 11 39 39 H 0.97004 * 119.99578 * 179.97438 * 17 16 14 40 40 H 1.09005 * 110.40831 * 82.18389 * 22 9 8 41 41 H 1.08992 * 110.41532 * 319.74151 * 22 9 8 42 42 H 1.08003 * 120.00368 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 -0.0002 -0.0002 6 6 5.7787 -0.0003 -0.0013 7 6 3.5806 -1.1971 0.0002 8 6 4.3340 -2.5023 0.0000 9 7 4.7877 -2.8060 1.3638 10 6 3.6490 -2.7908 2.3204 11 6 4.1426 -3.6238 3.5228 12 6 5.2427 -4.5426 2.9523 13 8 4.8803 -5.9145 3.1208 14 6 6.5609 -4.2616 3.6263 15 1 6.6237 -3.5066 4.3960 16 6 7.6868 -4.9684 3.2604 17 7 8.8047 -4.8207 3.9372 18 14 7.6242 -6.1357 1.8035 19 1 8.0794 -5.4264 0.5809 20 1 8.5126 -7.2975 2.0614 21 1 6.2309 -6.6116 1.6099 22 6 5.3218 -4.1894 1.4515 23 6 2.1980 -1.1970 -0.0048 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8898 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1326 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.1413 -0.0007 -1.0293 30 1 6.1425 0.8899 0.5119 31 1 6.1424 -0.8900 0.5125 32 1 5.1972 -2.4234 -0.6609 33 1 3.6792 -3.2997 -0.3511 34 1 2.7702 -3.2542 1.8720 35 1 3.4249 -1.7704 2.6312 36 1 3.3263 -4.2194 3.9314 37 1 4.5558 -2.9709 4.2916 38 1 4.7719 -6.1822 4.0438 39 1 9.5967 -5.3183 3.6800 40 1 6.3558 -4.2202 1.1077 41 1 4.7055 -4.8726 0.8672 42 1 1.6580 -2.1323 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:03 Heat of formation + Delta-G solvation = -39.475579 kcal Electronic energy + Delta-G solvation = -21942.189687 eV Core-core repulsion = 18886.004129 eV Total energy + Delta-G solvation = -3056.185558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00550 -39.80963 -36.90258 -34.81338 -34.43553 -33.09751 -30.97378 -30.11854 -29.86063 -27.18518 -25.75381 -25.40516 -23.00843 -22.56831 -21.41313 -20.54681 -19.07426 -17.42081 -17.14281 -16.76040 -16.59610 -16.19372 -15.81942 -15.38076 -15.13743 -14.74022 -14.66977 -14.30950 -14.02478 -13.83943 -13.71742 -13.62288 -13.51195 -13.28405 -13.19089 -12.67772 -12.62739 -12.46758 -12.24697 -12.10161 -11.97725 -11.81335 -11.69230 -11.52008 -10.97412 -10.76694 -10.24632 -9.71583 -9.39286 -9.17354 -8.32883 -6.42343 0.44615 0.51429 1.33773 1.40292 1.64733 2.39829 2.72497 3.00983 3.21298 3.64423 3.78361 3.91562 4.03066 4.07164 4.18085 4.21233 4.26385 4.40887 4.41635 4.43162 4.60835 4.67848 4.69534 4.78276 4.84519 4.85798 4.87535 4.88191 4.97969 5.04274 5.22648 5.24885 5.26538 5.36141 5.47858 5.55724 5.60588 5.72480 5.82951 5.90985 6.13057 6.14521 6.20273 6.66970 7.19069 7.37500 8.82088 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.005213 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.383322 B = 5370.253905 C = 5787.045130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.122 4.122 4 C -0.126 4.126 5 C -0.082 4.082 6 C -0.120 4.120 7 C -0.088 4.088 8 C 0.082 3.918 9 N -0.502 5.502 10 C 0.055 3.945 11 C -0.136 4.136 12 C 0.215 3.785 13 O -0.583 6.583 14 C -0.531 4.531 15 H 0.035 0.965 16 C 0.033 3.967 17 N -0.939 5.939 18 Si 0.931 3.069 19 H -0.285 1.285 20 H -0.303 1.303 21 H -0.212 1.212 22 C 0.052 3.948 23 C -0.119 4.119 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.376 0.624 39 H 0.265 0.735 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 9.519 -10.181 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.083 4.083 6 C -0.177 4.177 7 C -0.088 4.088 8 C -0.045 4.045 9 N -0.227 5.227 10 C -0.073 4.073 11 C -0.174 4.174 12 C 0.175 3.825 13 O -0.390 6.390 14 C -0.569 4.569 15 H 0.053 0.947 16 C -0.166 4.166 17 N -0.579 5.579 18 Si 0.757 3.243 19 H -0.213 1.213 20 H -0.230 1.230 21 H -0.134 1.134 22 C -0.076 4.076 23 C -0.137 4.137 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.154 0.846 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.224 0.776 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.755 9.870 -10.680 21.441 hybrid contribution 0.397 -1.115 0.141 1.192 sum -15.358 8.755 -10.538 20.581 Atomic orbital electron populations 1.20792 0.89370 1.03429 1.02974 1.20156 0.97384 0.92658 0.99881 1.21294 0.93963 0.98338 1.00377 1.21252 0.94771 0.97522 1.00870 1.19916 0.96418 0.92877 0.99093 1.20847 0.91294 1.03267 1.02243 1.19603 0.93767 0.93882 1.01552 1.21243 0.98380 0.94171 0.90735 1.65392 1.27844 1.23714 1.05720 1.22900 0.92058 0.99755 0.92590 1.22889 0.98076 0.98565 0.97887 1.19628 0.91759 0.79560 0.91579 1.86450 1.91886 1.28812 1.31876 1.21572 0.93494 1.20674 1.21130 0.94692 1.25730 0.94664 0.97554 0.98632 1.70081 1.02608 1.43756 1.41465 0.86140 0.80600 0.78178 0.79381 1.21252 1.23043 1.13405 1.23099 0.98687 0.88954 0.96818 1.21053 0.92925 0.98459 1.01277 0.90336 0.91381 0.90433 0.83922 0.84595 0.90712 0.91228 0.91855 0.90191 0.93557 0.93059 0.90730 0.90081 0.92664 0.77593 0.92635 0.92471 0.94118 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.22 16 3 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 4 C -0.13 -2.89 9.70 22.27 0.22 -2.68 16 5 C -0.08 -2.25 5.88 -19.87 -0.12 -2.37 16 6 C -0.12 -3.30 9.26 71.23 0.66 -2.64 16 7 C -0.09 -2.47 4.38 -19.86 -0.09 -2.55 16 8 C 0.08 2.57 4.33 85.56 0.37 2.94 16 9 N -0.50 -19.03 4.82 -885.61 -4.27 -23.30 16 10 C 0.05 1.88 5.22 86.42 0.45 2.33 16 11 C -0.14 -5.30 6.43 31.49 0.20 -5.10 16 12 C 0.21 9.84 0.90 -10.64 -0.01 9.83 16 13 O -0.58 -25.29 10.16 -148.98 -1.51 -26.80 16 14 C -0.53 -30.03 8.82 25.60 0.23 -29.80 16 15 H 0.03 2.21 7.60 -2.91 -0.02 2.19 16 16 C 0.03 1.95 5.43 84.66 0.46 2.41 16 17 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 18 Si 0.93 45.93 24.05 68.60 1.65 47.58 16 19 H -0.29 -13.81 7.09 99.48 0.71 -13.11 16 20 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 21 H -0.21 -9.89 5.22 99.48 0.52 -9.37 16 22 C 0.05 2.26 4.16 86.45 0.36 2.62 16 23 C -0.12 -2.89 8.70 22.27 0.19 -2.70 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 26 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 27 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 31 H 0.06 2.13 6.35 -2.39 -0.02 2.12 16 32 H 0.08 2.50 7.28 -2.39 -0.02 2.48 16 33 H 0.05 1.36 7.74 -2.39 -0.02 1.34 16 34 H 0.05 1.58 7.85 -2.39 -0.02 1.56 16 35 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 36 H 0.08 2.74 7.98 -2.39 -0.02 2.72 16 37 H 0.05 2.33 7.42 -2.39 -0.02 2.31 16 38 H 0.38 14.15 9.08 -74.05 -0.67 13.48 16 39 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.06 2.73 4.85 -2.38 -0.01 2.72 16 41 H 0.04 1.66 7.76 -2.39 -0.02 1.64 16 42 H 0.12 2.74 8.04 -2.91 -0.02 2.72 16 Total: -1.00 -67.57 326.04 0.05 -67.52 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.14 Total: 26.80 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 3.74 Total: -33.05 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -3.97 Total: -82.04 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.51 Total: -26.80 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.65 Total: 47.58 kcal Total: -67.57 0.05 -67.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.045 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds