Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38228 * 120.00108 * 2 1 4 4 C 1.38234 * 120.00012 * 180.27348 * 3 2 1 5 5 C 1.50698 * 119.99933 * 179.72803 * 4 3 2 6 6 C 1.38236 * 119.99762 * 359.49581 * 4 3 2 7 7 C 1.38228 * 120.00034 * 0.50419 * 6 4 3 8 8 C 1.50697 * 119.99895 * 179.71992 * 7 6 4 9 9 N 1.46899 * 109.47588 * 270.02682 * 8 7 6 10 10 C 1.47849 * 110.99575 * 290.84307 * 9 8 7 11 11 C 1.54910 * 104.79289 * 213.63472 * 10 9 8 12 12 C 1.55140 * 101.65313 * 37.07186 * 11 10 9 13 13 O 1.42902 * 110.85625 * 82.79959 * 12 11 10 14 14 C 1.50708 * 110.70509 * 205.96080 * 12 11 10 15 15 H 1.08003 * 119.99498 * 116.11554 * 14 12 11 16 16 C 1.37871 * 120.00032 * 296.11874 * 14 12 11 17 17 N 1.31514 * 120.00225 * 5.70787 * 16 14 12 18 18 Si 1.86809 * 119.99720 * 185.71345 * 16 14 12 19 19 H 1.48497 * 109.46808 * 84.99417 * 18 16 14 20 20 H 1.48499 * 109.46753 * 204.99003 * 18 16 14 21 21 H 1.48496 * 109.46705 * 324.99337 * 18 16 14 22 22 C 1.47445 * 110.99960 * 170.00406 * 9 8 7 23 23 C 1.38236 * 119.99704 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46727 * 89.99854 * 1 2 3 25 25 H 1.08997 * 109.46947 * 209.99480 * 1 2 3 26 26 H 1.08992 * 109.46922 * 330.00024 * 1 2 3 27 27 H 1.08002 * 119.99836 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47384 * 90.00381 * 5 4 3 29 29 H 1.09007 * 109.47152 * 210.00424 * 5 4 3 30 30 H 1.09006 * 109.47334 * 330.00140 * 5 4 3 31 31 H 1.08000 * 119.99848 * 180.23056 * 6 4 3 32 32 H 1.09003 * 109.47054 * 30.02780 * 8 7 6 33 33 H 1.09004 * 109.46966 * 150.02247 * 8 7 6 34 34 H 1.08998 * 110.37570 * 332.46170 * 10 9 8 35 35 H 1.08994 * 110.37322 * 94.81026 * 10 9 8 36 36 H 1.09001 * 110.99251 * 278.97972 * 11 10 9 37 37 H 1.09000 * 111.02313 * 155.17956 * 11 10 9 38 38 H 0.96700 * 113.99526 * 60.70101 * 13 12 11 39 39 H 0.97002 * 119.99907 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.88145 * 242.66183 * 22 9 8 41 41 H 1.09001 * 109.88963 * 3.84733 * 22 9 8 42 42 H 1.08004 * 120.00325 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0057 5 6 4.3340 2.5021 -0.0119 6 6 4.2717 -0.0001 -0.0009 7 6 3.5806 -1.1972 -0.0009 8 6 4.3340 -2.5023 -0.0020 9 7 4.5785 -2.9255 -1.3873 10 6 3.3179 -3.3220 -2.0503 11 6 3.7208 -4.4654 -3.0147 12 6 4.7993 -5.2100 -2.1846 13 8 4.1941 -6.1184 -1.2623 14 6 5.7618 -5.9351 -3.0897 15 1 6.8032 -5.6495 -3.1100 16 6 5.3129 -6.9627 -3.8917 17 7 4.0281 -7.2369 -3.9517 18 14 6.5298 -7.9659 -4.8930 19 1 7.0845 -9.0557 -4.0505 20 1 5.8384 -8.5524 -6.0691 21 1 7.6338 -7.0868 -5.3553 22 6 5.5125 -4.0654 -1.4346 23 6 2.1982 -1.1972 -0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5138 27 1 1.6582 2.1324 0.0004 28 1 4.5200 2.8192 1.0142 29 1 5.2844 2.3706 -0.5295 30 1 3.7428 3.2607 -0.5251 31 1 5.3517 -0.0001 -0.0016 32 1 5.2866 -2.3723 0.5116 33 1 3.7451 -3.2622 0.5116 34 1 2.5989 -3.6821 -1.3144 35 1 2.9027 -2.4832 -2.6089 36 1 4.1439 -4.0673 -3.9371 37 1 2.8723 -5.1161 -3.2259 38 1 3.6612 -6.8078 -1.6817 39 1 3.7123 -7.9597 -4.5163 40 1 6.4188 -3.7801 -1.9687 41 1 5.7608 -4.3836 -0.4220 42 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = -36.176332 kcal Electronic energy + Delta-G solvation = -21411.495541 eV Core-core repulsion = 18355.453049 eV Total energy + Delta-G solvation = -3056.042492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63198 -38.15638 -34.94330 -33.44260 -32.46838 -32.12522 -29.38469 -28.10450 -27.32616 -26.56063 -25.45920 -23.88830 -20.92289 -20.55528 -19.72176 -19.43462 -17.07368 -16.14403 -15.63626 -15.26066 -14.86913 -14.70303 -14.14991 -13.84909 -13.81885 -13.37274 -13.22620 -12.90382 -12.82403 -12.54963 -12.43680 -11.96614 -11.92128 -11.61956 -11.40297 -11.31962 -11.18870 -10.95914 -10.84680 -10.60698 -10.49281 -10.43239 -10.23557 -9.86101 -9.22059 -8.64971 -8.47054 -8.39288 -8.07622 -7.60063 -6.18598 -4.25411 1.51696 1.53307 3.24896 3.31357 3.34550 3.83180 4.32782 4.78614 4.83270 4.87420 5.02607 5.07437 5.25205 5.35035 5.39488 5.53196 5.54939 5.60961 5.69131 5.72590 5.76066 5.83501 5.87289 5.97113 6.13723 6.16665 6.29211 6.31656 6.33504 6.44787 6.57374 6.68797 6.70253 6.86885 6.97833 7.09675 7.19446 7.44277 7.53493 7.69669 7.79347 7.84347 8.18094 8.75608 9.39359 9.45329 10.88149 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.004003 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.924589 B = 6993.716050 C = 7409.646661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.089 4.089 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.055 4.055 8 C 0.087 3.913 9 N -0.524 5.524 10 C 0.043 3.957 11 C -0.128 4.128 12 C 0.235 3.765 13 O -0.590 6.590 14 C -0.532 4.532 15 H 0.062 0.938 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.058 3.942 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.378 0.622 39 H 0.266 0.734 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 14.378 7.267 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.089 4.089 5 C -0.168 4.168 6 C -0.126 4.126 7 C -0.056 4.056 8 C -0.041 4.041 9 N -0.248 5.248 10 C -0.084 4.084 11 C -0.166 4.166 12 C 0.195 3.805 13 O -0.399 6.399 14 C -0.570 4.570 15 H 0.080 0.920 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.069 4.069 23 C -0.135 4.135 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.228 0.772 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.025 15.062 7.362 17.242 hybrid contribution -0.063 -1.668 -0.662 1.796 sum -4.088 13.394 6.700 15.524 Atomic orbital electron populations 1.20763 0.91501 1.02376 1.02223 1.19826 0.95778 0.93105 0.99983 1.20784 0.93492 0.97173 1.03265 1.19843 0.93768 0.95167 1.00101 1.20753 0.99947 0.94152 1.01924 1.20865 0.99666 0.91209 1.00818 1.19840 0.93376 0.95036 0.97340 1.21222 0.98780 0.92677 0.91436 1.63719 1.11873 1.35929 1.13241 1.23095 0.90681 0.97712 0.96930 1.23158 1.00702 0.95225 0.97553 1.19731 0.89341 0.85944 0.85483 1.86115 1.70126 1.45329 1.38285 1.21573 0.95579 1.17258 1.22639 0.92019 1.24995 0.95312 0.96896 0.95915 1.69756 1.12818 1.30696 1.40333 0.86503 0.81167 0.80350 0.79347 1.20455 1.21209 1.19820 1.22849 0.95648 0.88781 0.99643 1.20961 0.93767 0.97420 1.01385 0.91288 0.91667 0.91903 0.86685 0.91532 0.91549 0.91878 0.86202 0.90690 0.93900 0.94654 0.92257 0.91846 0.90652 0.77244 0.92459 0.90156 0.93550 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.09 -1.13 5.88 -104.62 -0.62 -1.74 16 3 C -0.13 -1.58 9.36 -39.59 -0.37 -1.95 16 4 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 5 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 6 C -0.11 -1.52 9.36 -39.59 -0.37 -1.89 16 7 C -0.06 -0.86 5.09 -104.63 -0.53 -1.39 16 8 C 0.09 1.49 4.72 -4.98 -0.02 1.46 16 9 N -0.52 -10.40 5.15 -232.69 -1.20 -11.60 16 10 C 0.04 0.88 5.60 -2.29 -0.01 0.87 16 11 C -0.13 -3.01 5.48 -24.59 -0.13 -3.14 16 12 C 0.24 5.87 0.84 -89.95 -0.08 5.80 16 13 O -0.59 -15.29 13.06 -35.23 -0.46 -15.75 16 14 C -0.53 -14.39 8.20 -34.44 -0.28 -14.67 16 15 H 0.06 1.66 7.56 -52.48 -0.40 1.26 16 16 C 0.07 1.89 5.28 -17.82 -0.09 1.79 16 17 N -0.90 -24.05 10.71 55.43 0.59 -23.46 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.06 1.28 6.21 -2.84 -0.02 1.26 16 23 C -0.12 -1.72 8.58 -39.58 -0.34 -2.06 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.07 1.19 7.98 -51.93 -0.41 0.77 16 33 H 0.04 0.77 7.79 -51.93 -0.40 0.36 16 34 H 0.04 0.71 6.99 -51.93 -0.36 0.35 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.56 8.04 -51.93 -0.42 1.14 16 37 H 0.07 1.87 7.52 -51.93 -0.39 1.48 16 38 H 0.38 9.90 7.51 45.56 0.34 10.24 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.08 1.77 7.65 -51.93 -0.40 1.37 16 41 H 0.05 1.01 7.47 -51.93 -0.39 0.62 16 42 H 0.12 1.72 7.48 -52.48 -0.39 1.32 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -27.95 337.50 -9.92 -37.86 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.15 Total: 10.92 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.76 Total: -18.87 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.61 Total: -35.06 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.46 Total: -15.75 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.95 -9.92 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.686 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds