Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38228 * 120.00108 * 2 1 4 4 C 1.38234 * 120.00012 * 180.27348 * 3 2 1 5 5 C 1.50698 * 119.99933 * 179.72803 * 4 3 2 6 6 C 1.38236 * 119.99762 * 359.49581 * 4 3 2 7 7 C 1.38228 * 120.00034 * 0.50419 * 6 4 3 8 8 C 1.50697 * 119.99895 * 179.71992 * 7 6 4 9 9 N 1.46899 * 109.47588 * 270.02682 * 8 7 6 10 10 C 1.47849 * 110.99575 * 290.84307 * 9 8 7 11 11 C 1.54910 * 104.79289 * 213.63472 * 10 9 8 12 12 C 1.55140 * 101.65313 * 37.07186 * 11 10 9 13 13 O 1.42902 * 110.85625 * 82.79959 * 12 11 10 14 14 C 1.50708 * 110.70509 * 205.96080 * 12 11 10 15 15 H 1.08003 * 119.99498 * 116.11554 * 14 12 11 16 16 C 1.37871 * 120.00032 * 296.11874 * 14 12 11 17 17 N 1.31514 * 120.00225 * 5.70787 * 16 14 12 18 18 Si 1.86809 * 119.99720 * 185.71345 * 16 14 12 19 19 H 1.48497 * 109.46808 * 84.99417 * 18 16 14 20 20 H 1.48499 * 109.46753 * 204.99003 * 18 16 14 21 21 H 1.48496 * 109.46705 * 324.99337 * 18 16 14 22 22 C 1.47445 * 110.99960 * 170.00406 * 9 8 7 23 23 C 1.38236 * 119.99704 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46727 * 89.99854 * 1 2 3 25 25 H 1.08997 * 109.46947 * 209.99480 * 1 2 3 26 26 H 1.08992 * 109.46922 * 330.00024 * 1 2 3 27 27 H 1.08002 * 119.99836 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47384 * 90.00381 * 5 4 3 29 29 H 1.09007 * 109.47152 * 210.00424 * 5 4 3 30 30 H 1.09006 * 109.47334 * 330.00140 * 5 4 3 31 31 H 1.08000 * 119.99848 * 180.23056 * 6 4 3 32 32 H 1.09003 * 109.47054 * 30.02780 * 8 7 6 33 33 H 1.09004 * 109.46966 * 150.02247 * 8 7 6 34 34 H 1.08998 * 110.37570 * 332.46170 * 10 9 8 35 35 H 1.08994 * 110.37322 * 94.81026 * 10 9 8 36 36 H 1.09001 * 110.99251 * 278.97972 * 11 10 9 37 37 H 1.09000 * 111.02313 * 155.17956 * 11 10 9 38 38 H 0.96700 * 113.99526 * 60.70101 * 13 12 11 39 39 H 0.97002 * 119.99907 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.88145 * 242.66183 * 22 9 8 41 41 H 1.09001 * 109.88963 * 3.84733 * 22 9 8 42 42 H 1.08004 * 120.00325 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0057 5 6 4.3340 2.5021 -0.0119 6 6 4.2717 -0.0001 -0.0009 7 6 3.5806 -1.1972 -0.0009 8 6 4.3340 -2.5023 -0.0020 9 7 4.5785 -2.9255 -1.3873 10 6 3.3179 -3.3220 -2.0503 11 6 3.7208 -4.4654 -3.0147 12 6 4.7993 -5.2100 -2.1846 13 8 4.1941 -6.1184 -1.2623 14 6 5.7618 -5.9351 -3.0897 15 1 6.8032 -5.6495 -3.1100 16 6 5.3129 -6.9627 -3.8917 17 7 4.0281 -7.2369 -3.9517 18 14 6.5298 -7.9659 -4.8930 19 1 7.0845 -9.0557 -4.0505 20 1 5.8384 -8.5524 -6.0691 21 1 7.6338 -7.0868 -5.3553 22 6 5.5125 -4.0654 -1.4346 23 6 2.1982 -1.1972 -0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5138 27 1 1.6582 2.1324 0.0004 28 1 4.5200 2.8192 1.0142 29 1 5.2844 2.3706 -0.5295 30 1 3.7428 3.2607 -0.5251 31 1 5.3517 -0.0001 -0.0016 32 1 5.2866 -2.3723 0.5116 33 1 3.7451 -3.2622 0.5116 34 1 2.5989 -3.6821 -1.3144 35 1 2.9027 -2.4832 -2.6089 36 1 4.1439 -4.0673 -3.9371 37 1 2.8723 -5.1161 -3.2259 38 1 3.6612 -6.8078 -1.6817 39 1 3.7123 -7.9597 -4.5163 40 1 6.4188 -3.7801 -1.9687 41 1 5.7608 -4.3836 -0.4220 42 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -53.012354 kcal Electronic energy + Delta-G solvation = -21412.225606 eV Core-core repulsion = 18355.453049 eV Total energy + Delta-G solvation = -3056.772557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82537 -39.76430 -36.70001 -34.34264 -34.19509 -33.81181 -30.97345 -29.93130 -28.24837 -27.51305 -27.07028 -25.61203 -22.37074 -21.57119 -21.32896 -21.09121 -19.10647 -17.22017 -16.97829 -16.89885 -16.63885 -16.21344 -15.90533 -15.14799 -15.04029 -14.74736 -14.27915 -13.96881 -13.95601 -13.87354 -13.76296 -13.33338 -13.29426 -13.20124 -12.92637 -12.82096 -12.65635 -12.41135 -12.35229 -12.27398 -12.08060 -11.97487 -11.77220 -11.57823 -11.12910 -10.67355 -10.11881 -9.55107 -9.39110 -9.21812 -8.21726 -6.36382 0.46421 0.51198 1.40587 1.42375 1.51249 2.38556 2.74565 3.01971 3.30220 3.77686 3.86320 3.89390 3.98816 4.16871 4.28122 4.33587 4.39171 4.48561 4.50570 4.56295 4.60590 4.70979 4.74489 4.77279 4.82881 4.83497 4.89350 5.03214 5.10149 5.11246 5.24016 5.30574 5.40596 5.46701 5.54496 5.67942 5.69524 5.78529 5.79488 5.96134 6.15900 6.20073 6.22299 6.67381 7.31903 7.36740 8.83262 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.004003 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.924589 B = 6993.716050 C = 7409.646661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.090 4.090 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.073 4.073 8 C 0.091 3.909 9 N -0.522 5.522 10 C 0.059 3.941 11 C -0.119 4.119 12 C 0.221 3.779 13 O -0.595 6.595 14 C -0.560 4.560 15 H 0.056 0.944 16 C 0.031 3.969 17 N -0.912 5.912 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.065 3.935 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.373 0.627 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 16.222 7.449 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.166 4.166 6 C -0.140 4.140 7 C -0.074 4.074 8 C -0.037 4.037 9 N -0.246 5.246 10 C -0.069 4.069 11 C -0.158 4.158 12 C 0.181 3.819 13 O -0.403 6.403 14 C -0.598 4.598 15 H 0.074 0.926 16 C -0.170 4.170 17 N -0.551 5.551 18 Si 0.785 3.215 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.195 1.195 22 C -0.063 4.063 23 C -0.154 4.154 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.161 0.839 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.222 0.778 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.232 16.920 7.554 19.007 hybrid contribution -0.034 -2.194 -0.691 2.301 sum -4.266 14.725 6.863 16.797 Atomic orbital electron populations 1.20812 0.89551 1.03508 1.02866 1.20166 0.97329 0.92693 0.98905 1.21163 0.93598 0.98016 1.02028 1.20224 0.94301 0.95851 0.98652 1.20806 0.99865 0.92812 1.03100 1.21013 1.00072 0.91476 1.01427 1.19732 0.93731 0.94520 0.99376 1.21221 0.99507 0.93425 0.89540 1.63726 1.11176 1.34405 1.15253 1.22921 0.90927 0.96775 0.96238 1.22952 0.99586 0.95889 0.97409 1.19942 0.89669 0.86402 0.85877 1.86110 1.70109 1.45451 1.38656 1.21851 0.95765 1.18430 1.23774 0.92622 1.25683 0.96917 0.97629 0.96773 1.69841 1.13913 1.30823 1.40530 0.85559 0.79162 0.78800 0.78010 1.20200 1.20615 1.19537 1.22716 0.95835 0.88565 0.99163 1.21023 0.93637 0.98082 1.02671 0.90769 0.91550 0.89839 0.83947 0.90094 0.91382 0.90337 0.85794 0.89655 0.95046 0.94587 0.91174 0.93422 0.92378 0.77797 0.92264 0.90372 0.93510 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 10.01 71.24 0.71 -1.27 16 2 C -0.09 -2.19 5.88 -19.86 -0.12 -2.30 16 3 C -0.13 -2.83 9.36 22.27 0.21 -2.62 16 4 C -0.09 -2.06 5.88 -19.87 -0.12 -2.18 16 5 C -0.11 -1.75 10.01 71.24 0.71 -1.04 16 6 C -0.12 -3.30 9.36 22.27 0.21 -3.09 16 7 C -0.07 -2.23 5.09 -19.87 -0.10 -2.33 16 8 C 0.09 3.10 4.72 85.56 0.40 3.50 16 9 N -0.52 -20.73 5.15 -890.08 -4.59 -25.31 16 10 C 0.06 2.41 5.60 86.77 0.49 2.90 16 11 C -0.12 -5.75 5.48 31.98 0.18 -5.58 16 12 C 0.22 11.24 0.84 -10.36 -0.01 11.23 16 13 O -0.60 -31.49 13.06 -148.98 -1.95 -33.44 16 14 C -0.56 -30.72 8.20 25.60 0.21 -30.51 16 15 H 0.06 3.04 7.56 -2.91 -0.02 3.01 16 16 C 0.03 1.63 5.28 84.65 0.45 2.08 16 17 N -0.91 -49.40 10.71 21.44 0.23 -49.17 16 18 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 C 0.06 2.89 6.21 86.64 0.54 3.43 16 23 C -0.14 -3.91 8.58 22.27 0.19 -3.72 16 24 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 26 H 0.08 1.14 8.08 -2.39 -0.02 1.13 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.08 8.09 -2.38 -0.02 1.06 16 30 H 0.08 1.03 8.09 -2.38 -0.02 1.01 16 31 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.09 2.69 7.98 -2.39 -0.02 2.67 16 33 H 0.03 1.14 7.79 -2.38 -0.02 1.12 16 34 H 0.04 1.47 6.99 -2.39 -0.02 1.45 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 37 H 0.06 2.96 7.52 -2.39 -0.02 2.94 16 38 H 0.37 20.08 7.51 -74.06 -0.56 19.52 16 39 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.08 3.49 7.65 -2.38 -0.02 3.47 16 41 H 0.05 2.05 7.47 -2.39 -0.02 2.03 16 42 H 0.11 3.24 7.48 -2.91 -0.02 3.21 16 Total: -1.00 -59.23 337.50 0.11 -59.11 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.44 Total: 35.54 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 3.95 Total: -31.49 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -4.36 Total: -74.48 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.95 Total: -33.44 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -59.23 0.11 -59.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.102 kcal (2) G-P(sol) polarization free energy of solvation -59.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds