Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 120.00147 * 2 1 4 4 C 1.38235 * 120.00065 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99772 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00308 * 359.94926 * 4 3 2 7 7 C 1.38237 * 119.99819 * 359.97438 * 6 4 3 8 8 C 1.50693 * 120.00124 * 180.02562 * 7 6 4 9 9 N 1.46904 * 109.47127 * 90.00167 * 8 7 6 10 10 C 1.47439 * 111.00045 * 69.87582 * 9 8 7 11 11 C 1.54322 * 107.36952 * 236.65966 * 10 9 8 12 12 C 1.55398 * 102.90031 * 337.89642 * 11 10 9 13 13 O 1.42894 * 110.90261 * 277.37719 * 12 11 10 14 14 C 1.50696 * 111.02695 * 153.63025 * 12 11 10 15 15 H 1.07991 * 120.00591 * 247.60311 * 14 12 11 16 16 C 1.37885 * 119.99573 * 67.60648 * 14 12 11 17 17 N 1.31515 * 119.99698 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99798 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47017 * 90.00001 * 18 16 14 20 20 H 1.48496 * 109.46853 * 209.99850 * 18 16 14 21 21 H 1.48496 * 109.47363 * 330.00128 * 18 16 14 22 22 C 1.47843 * 110.99640 * 309.02874 * 9 8 7 23 23 C 1.38240 * 120.00025 * 180.16318 * 2 1 3 24 24 H 1.08994 * 109.46800 * 90.00841 * 1 2 3 25 25 H 1.09002 * 109.46566 * 210.00004 * 1 2 3 26 26 H 1.08995 * 109.46924 * 329.99683 * 1 2 3 27 27 H 1.07999 * 119.99925 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.47411 * 269.97440 * 5 4 3 29 29 H 1.09005 * 109.47498 * 29.97842 * 5 4 3 30 30 H 1.09008 * 109.47116 * 149.97488 * 5 4 3 31 31 H 1.07997 * 120.00074 * 180.02562 * 6 4 3 32 32 H 1.08999 * 109.46976 * 330.00096 * 8 7 6 33 33 H 1.09001 * 109.47462 * 209.99803 * 8 7 6 34 34 H 1.09002 * 109.88998 * 356.14887 * 10 9 8 35 35 H 1.09003 * 109.88733 * 117.17548 * 10 9 8 36 36 H 1.09005 * 110.70342 * 96.18020 * 11 10 9 37 37 H 1.08997 * 110.70605 * 219.41644 * 11 10 9 38 38 H 0.96697 * 114.00262 * 292.32457 * 13 12 11 39 39 H 0.97001 * 119.99346 * 179.97438 * 17 16 14 40 40 H 1.08996 * 110.37823 * 265.19398 * 22 9 8 41 41 H 1.09001 * 110.37314 * 27.42672 * 22 9 8 42 42 H 1.07998 * 120.00180 * 0.04545 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2718 0.0000 0.0000 7 6 3.5806 -1.1972 0.0016 8 6 4.3341 -2.5022 0.0027 9 7 4.5794 -2.9248 1.3881 10 6 3.3252 -3.3361 2.0451 11 6 3.1646 -2.4720 3.3135 12 6 4.6197 -2.0115 3.6061 13 8 5.3397 -3.0191 4.3190 14 6 4.6326 -0.7070 4.3604 15 1 5.0071 0.1877 3.8856 16 6 4.1663 -0.6558 5.6570 17 7 3.7098 -1.7453 6.2351 18 14 4.1830 0.9611 6.5924 19 1 2.9017 1.6769 6.3665 20 1 4.3505 0.6919 8.0431 21 1 5.3100 1.7998 6.1111 22 6 5.1869 -1.8311 2.1759 23 6 2.1982 -1.1972 -0.0034 24 1 -0.3633 -0.0002 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6583 2.1324 -0.0004 28 1 4.5157 2.8164 -1.0289 29 1 3.7450 3.2621 0.5124 30 1 5.2865 2.3721 0.5128 31 1 5.3518 0.0000 0.0000 32 1 5.2863 -2.3725 -0.5116 33 1 3.7448 -3.2625 -0.5100 34 1 2.4829 -3.1694 1.3736 35 1 3.3782 -4.3900 2.3186 36 1 2.5216 -1.6141 3.1165 37 1 2.7728 -3.0672 4.1383 38 1 5.0206 -3.1677 5.2196 39 1 3.3821 -1.7093 7.1474 40 1 6.2726 -1.9265 2.1835 41 1 4.8946 -0.8629 1.7692 42 1 1.6583 -2.1325 -0.0068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = -28.796315 kcal Electronic energy + Delta-G solvation = -22437.316182 eV Core-core repulsion = 19381.593711 eV Total energy + Delta-G solvation = -3055.722471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88169 -37.87536 -34.94428 -33.34374 -32.16886 -31.93772 -29.31868 -28.22509 -27.19740 -26.39191 -25.54304 -23.87156 -20.84531 -20.56581 -19.66049 -19.23524 -17.07582 -16.07099 -15.52170 -15.05254 -14.86434 -14.74106 -14.30700 -13.73561 -13.66097 -13.22409 -13.11829 -12.82760 -12.69000 -12.46883 -12.39958 -11.95566 -11.71909 -11.57128 -11.23534 -11.15291 -10.93065 -10.89138 -10.80466 -10.66935 -10.63580 -10.40982 -10.20320 -9.79555 -9.15987 -8.55235 -8.34743 -8.21101 -7.99403 -7.52770 -6.17765 -4.24400 1.64455 1.65166 3.23095 3.30174 3.33957 3.97203 4.32220 4.81458 4.96612 4.97907 5.07970 5.12758 5.34764 5.48261 5.50793 5.54707 5.65557 5.72912 5.74056 5.81062 5.86683 5.96527 6.00094 6.02670 6.13308 6.19602 6.28864 6.40182 6.43207 6.56897 6.75429 6.79867 6.80411 6.89773 6.97258 7.15790 7.31581 7.51750 7.53228 7.68273 7.82091 7.88581 8.20953 8.77074 9.43992 9.67337 10.89571 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.007484 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.663739 B = 3740.246825 C = 4455.494004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.101 4.101 8 C 0.085 3.915 9 N -0.515 5.515 10 C 0.040 3.960 11 C -0.142 4.142 12 C 0.254 3.746 13 O -0.583 6.583 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.043 3.957 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.381 0.619 39 H 0.267 0.733 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 3.632 -12.327 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.169 4.169 6 C -0.127 4.127 7 C -0.103 4.103 8 C -0.044 4.044 9 N -0.237 5.237 10 C -0.088 4.088 11 C -0.181 4.181 12 C 0.214 3.786 13 O -0.392 6.392 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.084 4.084 23 C -0.132 4.132 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.422 3.073 -12.734 13.539 hybrid contribution -1.048 1.601 1.245 2.282 sum -4.469 4.674 -11.489 13.184 Atomic orbital electron populations 1.20750 0.91599 1.02734 1.01699 1.19810 0.95715 0.93204 0.99828 1.20789 0.93520 0.97216 1.02670 1.19818 0.93786 0.95175 0.99535 1.20764 1.00203 0.94240 1.01691 1.20866 0.99471 0.91517 1.00807 1.20625 0.94246 0.96656 0.98792 1.21423 0.98669 0.91441 0.92830 1.63994 1.23618 1.35527 1.00554 1.22871 0.89886 0.99822 0.96212 1.23253 1.01363 0.98093 0.95390 1.19529 0.85681 0.86349 0.87061 1.86101 1.61716 1.59760 1.31641 1.21561 1.41798 0.94992 0.98439 0.92238 1.24983 0.93931 0.96789 0.97398 1.69590 1.42611 1.27498 1.14169 0.86509 0.78471 0.83593 0.78956 1.20623 1.21028 1.19755 1.23345 0.98884 0.92390 0.93802 1.20866 0.93539 0.97164 1.01597 0.91633 0.91638 0.91764 0.86690 0.91621 0.91757 0.91400 0.86282 0.90521 0.90799 0.94149 0.91889 0.92788 0.91165 0.76797 0.92333 0.91595 0.91562 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.09 -1.27 5.88 -104.62 -0.62 -1.88 16 3 C -0.12 -1.83 9.36 -39.58 -0.37 -2.20 16 4 C -0.08 -1.26 5.88 -104.63 -0.62 -1.87 16 5 C -0.11 -1.39 10.01 36.00 0.36 -1.03 16 6 C -0.11 -1.74 7.07 -39.58 -0.28 -2.02 16 7 C -0.10 -1.66 4.21 -104.62 -0.44 -2.10 16 8 C 0.08 1.38 5.52 -4.98 -0.03 1.35 16 9 N -0.52 -10.34 5.41 -232.69 -1.26 -11.60 16 10 C 0.04 0.80 6.40 -2.84 -0.02 0.79 16 11 C -0.14 -3.38 5.65 -24.77 -0.14 -3.52 16 12 C 0.25 6.53 0.89 -89.49 -0.08 6.45 16 13 O -0.58 -15.94 13.18 -35.23 -0.46 -16.41 16 14 C -0.53 -14.53 8.25 -34.44 -0.28 -14.82 16 15 H 0.06 1.63 7.77 -52.49 -0.41 1.23 16 16 C 0.07 1.91 5.29 -17.82 -0.09 1.81 16 17 N -0.90 -24.52 10.78 55.43 0.60 -23.92 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 C 0.04 0.96 5.63 -2.29 -0.01 0.95 16 23 C -0.11 -1.78 8.29 -39.58 -0.33 -2.11 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.07 0.84 8.09 -51.92 -0.42 0.42 16 31 H 0.12 1.82 7.85 -52.49 -0.41 1.41 16 32 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 33 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 34 H 0.04 0.73 5.20 -51.93 -0.27 0.46 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 1.34 8.04 -51.93 -0.42 0.92 16 37 H 0.07 1.78 7.84 -51.93 -0.41 1.37 16 38 H 0.38 10.56 6.93 45.56 0.32 10.87 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.07 1.45 4.02 -51.93 -0.21 1.24 16 42 H 0.12 1.69 6.90 -52.49 -0.36 1.33 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -29.00 330.45 -9.68 -38.69 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.93 Total: 13.35 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.58 Total: -21.16 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.66 Total: -35.52 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.46 Total: -16.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.00 -9.68 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.889 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds