Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38248 * 120.00138 * 2 1 4 4 C 1.38219 * 120.00193 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99747 * 359.95653 * 4 3 2 6 6 C 1.38215 * 120.00052 * 359.79117 * 5 4 3 7 7 C 1.38210 * 119.99475 * 179.97438 * 2 1 3 8 8 C 1.50695 * 120.00348 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.47281 * 34.16973 * 8 7 2 10 10 C 1.52996 * 109.47246 * 274.16710 * 8 7 2 11 11 N 1.46901 * 109.46935 * 154.16509 * 8 7 2 12 12 C 1.48541 * 110.99924 * 176.41723 * 11 8 7 13 13 C 1.54939 * 103.22455 * 159.72368 * 12 11 8 14 14 C 1.54591 * 102.92290 * 322.58190 * 13 12 11 15 15 O 1.42893 * 110.39466 * 263.00123 * 14 13 12 16 16 C 1.50700 * 110.30575 * 140.87402 * 14 13 12 17 17 H 1.08002 * 120.00390 * 244.28448 * 16 14 13 18 18 C 1.37879 * 119.99940 * 64.28779 * 16 14 13 19 19 N 1.31519 * 119.99725 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00273 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46871 * 89.99755 * 20 18 16 22 22 H 1.48496 * 109.47153 * 210.00162 * 20 18 16 23 23 H 1.48501 * 109.46825 * 329.99973 * 20 18 16 24 24 C 1.47904 * 111.00599 * 293.81235 * 11 8 7 25 25 H 1.09000 * 109.46976 * 270.02728 * 1 2 3 26 26 H 1.09002 * 109.46585 * 30.01835 * 1 2 3 27 27 H 1.09000 * 109.47046 * 150.01874 * 1 2 3 28 28 H 1.08000 * 120.00244 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00211 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.00097 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.00422 * 180.25276 * 6 5 4 32 32 H 1.08995 * 109.47076 * 63.56512 * 10 8 7 33 33 H 1.08996 * 109.46943 * 183.56958 * 10 8 7 34 34 H 1.09007 * 109.46951 * 303.56598 * 10 8 7 35 35 H 1.09003 * 110.66365 * 278.15994 * 12 11 8 36 36 H 1.08993 * 110.66307 * 41.28799 * 12 11 8 37 37 H 1.09006 * 110.71995 * 204.22801 * 13 12 11 38 38 H 1.08999 * 110.72461 * 80.95147 * 13 12 11 39 39 H 0.96698 * 114.00355 * 295.76648 * 15 14 13 40 40 H 0.97003 * 119.99875 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.91355 * 333.51193 * 24 11 8 42 42 H 1.09002 * 109.91545 * 94.60106 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0002 6 6 3.5806 -1.1970 0.0051 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.5262 -2.3919 -0.5752 10 6 1.0992 -2.8903 1.4407 11 7 2.2790 -3.5498 -0.6015 12 6 1.6021 -4.8706 -0.5400 13 6 2.3280 -5.6922 -1.6348 14 6 2.5704 -4.6469 -2.7478 15 8 1.5487 -4.7333 -3.7431 16 6 3.9264 -4.8527 -3.3721 17 1 4.6851 -4.0896 -3.2793 18 6 4.1986 -6.0150 -4.0620 19 7 3.2745 -6.9440 -4.1755 20 14 5.8792 -6.2698 -4.8366 21 1 6.7794 -6.9327 -3.8590 22 1 5.7437 -7.1244 -6.0434 23 1 6.4506 -4.9547 -5.2230 24 6 2.5106 -3.2819 -2.0375 25 1 -0.3633 0.0005 1.0277 26 1 -0.3632 0.8899 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0010 30 1 5.3517 -0.0001 -0.0002 31 1 4.1206 -2.1324 0.0095 32 1 0.4286 -2.1445 1.8674 33 1 0.6104 -3.8645 1.4468 34 1 2.0130 -2.9386 2.0332 35 1 1.7402 -5.3283 0.4396 36 1 0.5421 -4.7708 -0.7732 37 1 1.6917 -6.5000 -1.9964 38 1 3.2739 -6.0832 -1.2601 39 1 1.5378 -5.5723 -4.2238 40 1 3.4661 -7.7619 -4.6605 41 1 1.6903 -2.6887 -2.4416 42 1 3.4529 -2.7501 -2.1687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = -41.392648 kcal Electronic energy + Delta-G solvation = -22136.196683 eV Core-core repulsion = 19079.927994 eV Total energy + Delta-G solvation = -3056.268688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06591 -39.58521 -37.00901 -34.32266 -34.13503 -33.17006 -30.89978 -30.02321 -29.18867 -27.69848 -26.23943 -24.64421 -22.90659 -21.84474 -21.29090 -20.72793 -19.12211 -17.45725 -17.31087 -16.90891 -16.24969 -15.97938 -15.91624 -15.38533 -14.98198 -14.76047 -14.43484 -14.02167 -13.95044 -13.79984 -13.65368 -13.28134 -13.15825 -13.01267 -12.93682 -12.69262 -12.59931 -12.51413 -12.36395 -12.27586 -12.01089 -11.88789 -11.73335 -11.39387 -11.07854 -10.61294 -10.10072 -9.57978 -9.41709 -9.31171 -8.22026 -6.35363 0.51396 0.58875 1.39538 1.41253 1.51096 2.38714 2.90066 2.97517 3.10856 3.73771 3.95248 4.04852 4.12254 4.19566 4.22642 4.30199 4.34738 4.41394 4.51287 4.52356 4.62907 4.70037 4.75226 4.84623 4.86427 4.94280 5.00010 5.04031 5.11403 5.21434 5.25554 5.31666 5.37643 5.41597 5.59769 5.65641 5.71793 5.76134 5.80960 6.01113 6.16106 6.21440 6.32391 6.68445 7.34523 7.44895 8.84144 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.005482 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.196084 B = 5106.117112 C = 5775.610298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.141 4.141 6 C -0.109 4.109 7 C -0.088 4.088 8 C 0.108 3.892 9 H 0.045 0.955 10 C -0.131 4.131 11 N -0.507 5.507 12 C 0.044 3.956 13 C -0.110 4.110 14 C 0.226 3.774 15 O -0.604 6.604 16 C -0.552 4.552 17 H 0.050 0.950 18 C 0.029 3.971 19 N -0.915 5.915 20 Si 0.959 3.041 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.275 1.275 24 C 0.076 3.924 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.378 0.622 40 H 0.269 0.731 41 H 0.021 0.979 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 11.814 10.708 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.159 4.159 6 C -0.127 4.127 7 C -0.089 4.089 8 C 0.000 4.000 9 H 0.062 0.938 10 C -0.188 4.188 11 N -0.232 5.232 12 C -0.083 4.083 13 C -0.149 4.149 14 C 0.186 3.814 15 O -0.413 6.413 16 C -0.591 4.591 17 H 0.068 0.932 18 C -0.171 4.171 19 N -0.555 5.555 20 Si 0.784 3.216 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.200 1.200 24 C -0.052 4.052 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.671 12.244 11.148 16.960 hybrid contribution 0.436 -1.128 -1.450 1.888 sum -3.235 11.116 9.698 15.102 Atomic orbital electron populations 1.20881 0.90089 1.02972 1.03189 1.20015 0.97117 0.92455 1.00012 1.21259 0.94500 0.97717 1.01204 1.21407 0.94615 0.98375 0.99757 1.21382 1.00603 0.92607 1.01341 1.21176 0.94246 0.98567 0.98707 1.19711 0.94005 0.93890 1.01253 1.20840 0.92988 0.89030 0.97182 0.93760 1.21775 1.01909 1.01974 0.93176 1.64769 1.42909 1.02132 1.13360 1.23199 0.95528 0.89942 0.99650 1.22751 0.98560 0.97660 0.95905 1.19629 0.85694 0.90656 0.85394 1.86078 1.56962 1.43448 1.54835 1.21919 0.98910 1.03180 1.35050 0.93163 1.25674 1.00627 0.95087 0.95735 1.69696 1.34885 1.08344 1.42593 0.85551 0.80017 0.77933 0.78076 1.19949 1.20446 1.19958 1.22517 0.99023 0.96375 0.87299 0.89580 0.90268 0.92431 0.83801 0.83852 0.85196 0.86678 0.90460 0.91700 0.92247 0.88996 0.94393 0.93211 0.93320 0.77166 0.92116 0.96086 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.50 71.24 0.68 -1.69 16 2 C -0.10 -2.49 5.88 -19.87 -0.12 -2.61 16 3 C -0.13 -2.96 9.70 22.27 0.22 -2.74 16 4 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 5 C -0.14 -3.86 10.05 22.27 0.22 -3.64 16 6 C -0.11 -3.51 8.31 22.27 0.19 -3.32 16 7 C -0.09 -2.72 4.52 -19.87 -0.09 -2.81 16 8 C 0.11 3.42 1.53 44.17 0.07 3.48 16 9 H 0.04 1.47 5.91 -2.39 -0.01 1.45 16 10 C -0.13 -3.33 9.03 71.98 0.65 -2.68 16 11 N -0.51 -19.51 4.03 -862.23 -3.48 -22.98 16 12 C 0.04 1.69 5.25 86.65 0.46 2.14 16 13 C -0.11 -5.20 5.49 31.80 0.17 -5.03 16 14 C 0.23 11.67 0.99 -10.66 -0.01 11.66 16 15 O -0.60 -32.96 12.93 -148.98 -1.93 -34.89 16 16 C -0.55 -30.79 8.10 25.60 0.21 -30.58 16 17 H 0.05 2.83 7.35 -2.91 -0.02 2.81 16 18 C 0.03 1.55 5.26 84.65 0.45 1.99 16 19 N -0.91 -49.84 10.88 21.45 0.23 -49.61 16 20 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.08 3.48 5.19 86.44 0.45 3.93 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 27 H 0.06 1.33 6.01 -2.39 -0.01 1.31 16 28 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.12 4.14 7.20 -2.91 -0.02 4.12 16 32 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 33 H 0.06 1.57 6.67 -2.39 -0.02 1.55 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.09 3.06 7.57 -2.39 -0.02 3.04 16 36 H 0.04 1.42 8.02 -2.39 -0.02 1.40 16 37 H 0.05 2.45 8.06 -2.38 -0.02 2.43 16 38 H 0.05 2.44 7.86 -2.39 -0.02 2.42 16 39 H 0.38 20.97 7.05 -74.06 -0.52 20.44 16 40 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 42 H 0.06 3.08 6.69 -2.39 -0.02 3.07 16 Total: -1.00 -60.37 328.29 1.10 -59.28 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.48 Total: 37.46 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 3.76 Total: -34.55 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -3.24 Total: -72.59 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.93 Total: -34.89 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -60.37 1.10 -59.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.883 kcal (2) G-P(sol) polarization free energy of solvation -60.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds