Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00263 * 2 1 4 4 C 1.38215 * 120.00266 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.38204 * 120.00165 * 359.71027 * 5 4 3 7 7 C 1.38219 * 120.00041 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99754 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.46968 * 327.37755 * 8 7 2 10 10 C 1.52998 * 109.46981 * 87.37830 * 8 7 2 11 11 N 1.46898 * 109.46595 * 207.37761 * 8 7 2 12 12 C 1.48571 * 110.99560 * 178.70695 * 11 8 7 13 13 C 1.54379 * 104.59172 * 200.96009 * 12 11 8 14 14 C 1.54257 * 105.06320 * 23.85560 * 13 12 11 15 15 O 1.42901 * 110.32305 * 118.89244 * 14 13 12 16 16 C 1.50696 * 110.32194 * 241.10426 * 14 13 12 17 17 H 1.08001 * 120.00246 * 118.54747 * 16 14 13 18 18 C 1.37883 * 119.99823 * 298.53930 * 16 14 13 19 19 N 1.31511 * 119.99934 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99842 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46722 * 120.00547 * 20 18 16 23 23 H 1.48500 * 109.47278 * 240.00385 * 20 18 16 24 24 C 1.48562 * 111.00141 * 63.29244 * 11 8 7 25 25 H 1.08997 * 109.46988 * 270.02617 * 1 2 3 26 26 H 1.08994 * 109.46992 * 30.02491 * 1 2 3 27 27 H 1.09002 * 109.46711 * 150.02494 * 1 2 3 28 28 H 1.08001 * 119.99551 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99999 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.99786 * 179.97438 * 5 4 3 31 31 H 1.08005 * 120.00484 * 180.29880 * 6 5 4 32 32 H 1.09001 * 109.47264 * 179.97438 * 10 8 7 33 33 H 1.08998 * 109.47013 * 299.99976 * 10 8 7 34 34 H 1.09000 * 109.46898 * 59.99837 * 10 8 7 35 35 H 1.08998 * 110.40871 * 82.18404 * 12 11 8 36 36 H 1.08999 * 110.51041 * 319.79489 * 12 11 8 37 37 H 1.08998 * 110.32119 * 264.95318 * 13 12 11 38 38 H 1.09005 * 110.31982 * 142.75411 * 13 12 11 39 39 H 0.96695 * 113.99866 * 61.45540 * 15 14 13 40 40 H 0.96999 * 119.99794 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.41100 * 40.25785 * 24 11 8 42 42 H 1.08994 * 110.40891 * 277.81130 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5807 -1.1969 0.0061 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5131 -2.3838 0.5542 10 6 1.1330 -2.9111 -1.4405 11 7 2.2646 -3.5409 0.6380 12 6 1.5403 -4.8372 0.6841 13 6 2.2417 -5.6351 1.8042 14 6 2.8873 -4.5683 2.7124 15 8 2.3473 -4.6482 4.0330 16 6 4.3834 -4.7452 2.7456 17 1 5.0286 -3.9556 2.3899 18 6 4.9286 -5.9152 3.2304 19 7 4.1430 -6.8769 3.6632 20 14 6.7833 -6.1342 3.2724 21 1 7.4380 -4.9150 2.7338 22 1 7.2241 -6.3546 4.6732 23 1 7.1621 -7.3070 2.4439 24 6 2.5216 -3.2155 2.0646 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3518 -0.0001 0.0005 31 1 4.1206 -2.1323 0.0109 32 1 0.5883 -3.8553 -1.4405 33 1 0.5246 -2.1402 -1.9134 34 1 2.0645 -3.0293 -1.9941 35 1 1.6326 -5.3583 -0.2688 36 1 0.4902 -4.6794 0.9300 37 1 3.0070 -6.2867 1.3825 38 1 1.5130 -6.2198 2.3658 39 1 2.5075 -5.4944 4.4728 40 1 4.5265 -7.7002 4.0039 41 1 1.6255 -2.8022 2.5276 42 1 3.3527 -2.5157 2.1511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = -24.748832 kcal Electronic energy + Delta-G solvation = -22215.580013 eV Core-core repulsion = 19160.033055 eV Total energy + Delta-G solvation = -3055.546958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.78983 -38.01675 -35.32079 -33.04472 -32.07051 -31.92547 -29.59640 -28.33929 -27.35720 -26.70513 -24.38275 -23.38506 -21.61499 -20.56616 -19.49792 -19.27298 -17.00697 -16.24652 -15.95017 -15.00299 -14.79054 -14.37138 -14.33171 -13.87794 -13.60276 -13.51503 -13.26301 -12.85523 -12.41003 -12.24410 -12.21671 -12.02670 -11.83193 -11.57180 -11.39698 -11.25129 -11.05852 -10.93377 -10.64447 -10.56503 -10.41198 -10.26864 -10.19222 -9.87092 -8.99549 -8.53684 -8.46991 -8.32357 -8.07468 -7.79512 -6.12946 -4.18063 1.58942 1.69075 3.26772 3.35252 3.40370 4.01054 4.38148 4.49013 4.90830 5.02301 5.14244 5.19010 5.36891 5.39780 5.47043 5.54361 5.66499 5.72089 5.75056 5.82516 5.91630 5.95143 6.05627 6.09489 6.16263 6.25342 6.29540 6.33620 6.41578 6.50833 6.59214 6.71379 6.82790 6.92432 6.96004 7.11738 7.27249 7.30635 7.61006 7.70769 7.76922 7.90016 8.26808 8.84634 9.46742 9.55634 10.94620 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.005839 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.993706 B = 4794.367461 C = 5481.221684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.071 4.071 8 C 0.107 3.893 9 H 0.046 0.954 10 C -0.137 4.137 11 N -0.493 5.493 12 C 0.034 3.966 13 C -0.120 4.120 14 C 0.248 3.752 15 O -0.595 6.595 16 C -0.515 4.515 17 H 0.062 0.938 18 C 0.065 3.935 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.056 3.944 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.381 0.619 40 H 0.264 0.736 41 H 0.027 0.973 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 10.272 -8.521 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.103 4.103 7 C -0.071 4.071 8 C -0.002 4.002 9 H 0.064 0.936 10 C -0.195 4.195 11 N -0.218 5.218 12 C -0.094 4.094 13 C -0.159 4.159 14 C 0.208 3.792 15 O -0.404 6.404 16 C -0.553 4.553 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.541 5.541 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.071 4.071 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.232 0.768 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.347 10.671 -8.905 14.892 hybrid contribution 0.481 -0.698 0.655 1.071 sum -4.866 9.973 -8.251 13.828 Atomic orbital electron populations 1.20837 0.91815 1.02447 1.02216 1.19703 0.95676 0.92739 1.00675 1.20858 0.94246 0.96941 1.02661 1.21049 0.94237 0.97834 1.01118 1.21181 0.99822 0.92611 1.01266 1.21289 0.93807 0.98775 0.96398 1.19664 0.94064 0.93374 0.99987 1.20711 0.93832 0.89647 0.96028 0.93610 1.21799 1.01907 1.00763 0.95023 1.65343 1.39502 1.01413 1.15559 1.23124 0.94986 0.91230 1.00034 1.22849 0.98667 0.98626 0.95743 1.19284 0.91704 0.88288 0.79902 1.86094 1.80875 1.42306 1.31130 1.21670 0.91484 1.01261 1.40894 0.91996 1.25003 0.98408 0.95534 0.94639 1.69708 1.34812 1.06523 1.43105 0.86446 0.85312 0.78095 0.77592 1.19687 1.21056 1.21020 1.22979 0.99106 0.98834 0.86227 0.91387 0.91903 0.91363 0.86704 0.86720 0.86382 0.84192 0.92336 0.92656 0.91661 0.91487 0.95438 0.90617 0.93167 0.76834 0.92593 0.95459 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.20 36.01 0.33 -1.00 16 2 C -0.09 -1.23 5.88 -104.62 -0.62 -1.84 16 3 C -0.13 -1.67 9.70 -39.58 -0.38 -2.06 16 4 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 5 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 6 C -0.08 -1.40 7.95 -39.59 -0.31 -1.71 16 7 C -0.07 -1.12 4.46 -104.62 -0.47 -1.58 16 8 C 0.11 1.72 1.35 -68.86 -0.09 1.63 16 9 H 0.05 0.75 6.69 -51.93 -0.35 0.40 16 10 C -0.14 -1.88 8.89 37.16 0.33 -1.55 16 11 N -0.49 -9.53 4.18 -223.40 -0.93 -10.46 16 12 C 0.03 0.66 5.39 -2.18 -0.01 0.65 16 13 C -0.12 -2.79 5.55 -25.35 -0.14 -2.93 16 14 C 0.25 6.23 1.05 -90.39 -0.10 6.13 16 15 O -0.60 -15.78 12.94 -35.23 -0.46 -16.23 16 16 C -0.51 -13.92 8.10 -34.44 -0.28 -14.20 16 17 H 0.06 1.69 7.53 -52.49 -0.40 1.30 16 18 C 0.07 1.74 5.02 -17.82 -0.09 1.65 16 19 N -0.90 -24.29 10.82 55.43 0.60 -23.69 16 20 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.06 1.25 4.88 -2.18 -0.01 1.23 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.07 0.76 5.63 -51.93 -0.29 0.46 16 28 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 31 H 0.14 2.54 7.20 -52.48 -0.38 2.17 16 32 H 0.06 0.76 6.97 -51.93 -0.36 0.40 16 33 H 0.05 0.65 7.15 -51.93 -0.37 0.28 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.19 7.67 -51.93 -0.40 0.79 16 36 H 0.03 0.50 7.96 -51.93 -0.41 0.09 16 37 H 0.08 1.92 7.24 -51.93 -0.38 1.54 16 38 H 0.05 1.18 7.98 -51.93 -0.41 0.76 16 39 H 0.38 10.18 7.33 45.56 0.33 10.51 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 42 H 0.08 1.78 6.39 -51.93 -0.33 1.44 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -27.90 326.80 -9.34 -37.25 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.82 Total: 12.10 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.63 Total: -19.91 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.33 Total: -34.15 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.46 Total: -16.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.90 -9.34 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.499 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds