Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00263 * 2 1 4 4 C 1.38215 * 120.00266 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.38204 * 120.00165 * 359.71027 * 5 4 3 7 7 C 1.38219 * 120.00041 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99754 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.46968 * 327.37755 * 8 7 2 10 10 C 1.52998 * 109.46981 * 87.37830 * 8 7 2 11 11 N 1.46898 * 109.46595 * 207.37761 * 8 7 2 12 12 C 1.48571 * 110.99560 * 178.70695 * 11 8 7 13 13 C 1.54379 * 104.59172 * 200.96009 * 12 11 8 14 14 C 1.54257 * 105.06320 * 23.85560 * 13 12 11 15 15 O 1.42901 * 110.32305 * 118.89244 * 14 13 12 16 16 C 1.50696 * 110.32194 * 241.10426 * 14 13 12 17 17 H 1.08001 * 120.00246 * 118.54747 * 16 14 13 18 18 C 1.37883 * 119.99823 * 298.53930 * 16 14 13 19 19 N 1.31511 * 119.99934 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99842 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47208 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46722 * 120.00547 * 20 18 16 23 23 H 1.48500 * 109.47278 * 240.00385 * 20 18 16 24 24 C 1.48562 * 111.00141 * 63.29244 * 11 8 7 25 25 H 1.08997 * 109.46988 * 270.02617 * 1 2 3 26 26 H 1.08994 * 109.46992 * 30.02491 * 1 2 3 27 27 H 1.09002 * 109.46711 * 150.02494 * 1 2 3 28 28 H 1.08001 * 119.99551 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99999 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.99786 * 179.97438 * 5 4 3 31 31 H 1.08005 * 120.00484 * 180.29880 * 6 5 4 32 32 H 1.09001 * 109.47264 * 179.97438 * 10 8 7 33 33 H 1.08998 * 109.47013 * 299.99976 * 10 8 7 34 34 H 1.09000 * 109.46898 * 59.99837 * 10 8 7 35 35 H 1.08998 * 110.40871 * 82.18404 * 12 11 8 36 36 H 1.08999 * 110.51041 * 319.79489 * 12 11 8 37 37 H 1.08998 * 110.32119 * 264.95318 * 13 12 11 38 38 H 1.09005 * 110.31982 * 142.75411 * 13 12 11 39 39 H 0.96695 * 113.99866 * 61.45540 * 15 14 13 40 40 H 0.96999 * 119.99794 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.41100 * 40.25785 * 24 11 8 42 42 H 1.08994 * 110.40891 * 277.81130 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5807 -1.1969 0.0061 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5131 -2.3838 0.5542 10 6 1.1330 -2.9111 -1.4405 11 7 2.2646 -3.5409 0.6380 12 6 1.5403 -4.8372 0.6841 13 6 2.2417 -5.6351 1.8042 14 6 2.8873 -4.5683 2.7124 15 8 2.3473 -4.6482 4.0330 16 6 4.3834 -4.7452 2.7456 17 1 5.0286 -3.9556 2.3899 18 6 4.9286 -5.9152 3.2304 19 7 4.1430 -6.8769 3.6632 20 14 6.7833 -6.1342 3.2724 21 1 7.4380 -4.9150 2.7338 22 1 7.2241 -6.3546 4.6732 23 1 7.1621 -7.3070 2.4439 24 6 2.5216 -3.2155 2.0646 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3518 -0.0001 0.0005 31 1 4.1206 -2.1323 0.0109 32 1 0.5883 -3.8553 -1.4405 33 1 0.5246 -2.1402 -1.9134 34 1 2.0645 -3.0293 -1.9941 35 1 1.6326 -5.3583 -0.2688 36 1 0.4902 -4.6794 0.9300 37 1 3.0070 -6.2867 1.3825 38 1 1.5130 -6.2198 2.3658 39 1 2.5075 -5.4944 4.4728 40 1 4.5265 -7.7002 4.0039 41 1 1.6255 -2.8022 2.5276 42 1 3.3527 -2.5157 2.1511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = -41.673619 kcal Electronic energy + Delta-G solvation = -22216.313927 eV Core-core repulsion = 19160.033055 eV Total energy + Delta-G solvation = -3056.280872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06457 -39.55959 -37.02397 -34.36500 -34.14793 -33.17567 -30.87237 -29.97526 -29.08424 -27.69851 -26.30508 -24.60744 -22.90760 -21.90372 -21.19036 -20.78904 -19.03133 -17.44560 -17.36856 -16.85683 -16.20586 -15.93301 -15.87221 -15.37293 -14.88021 -14.85125 -14.54123 -14.08645 -13.97420 -13.82737 -13.67486 -13.21323 -13.16543 -12.96410 -12.92350 -12.69748 -12.60850 -12.47386 -12.37308 -12.25194 -12.01786 -11.87324 -11.74272 -11.37906 -10.94478 -10.60109 -10.12198 -9.57670 -9.42773 -9.31330 -8.18831 -6.31015 0.50424 0.58738 1.38564 1.41728 1.52675 2.40625 2.88190 2.97079 3.14574 3.72643 3.99151 4.04496 4.14595 4.19083 4.24289 4.31693 4.34498 4.40037 4.47796 4.54343 4.61240 4.71727 4.76077 4.82463 4.87436 4.90291 5.01223 5.05089 5.07331 5.23343 5.24971 5.32305 5.37480 5.39036 5.63704 5.67227 5.72587 5.76581 5.81510 6.00906 6.19387 6.22486 6.34010 6.73500 7.36804 7.44747 8.87372 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.005839 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.993706 B = 4794.367461 C = 5481.221684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.143 4.143 6 C -0.109 4.109 7 C -0.088 4.088 8 C 0.107 3.893 9 H 0.049 0.951 10 C -0.131 4.131 11 N -0.497 5.497 12 C 0.043 3.957 13 C -0.112 4.112 14 C 0.231 3.769 15 O -0.604 6.604 16 C -0.537 4.537 17 H 0.048 0.952 18 C 0.026 3.974 19 N -0.915 5.915 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.278 1.278 24 C 0.073 3.927 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.376 0.624 40 H 0.267 0.733 41 H 0.021 0.979 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 11.875 -9.679 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.161 4.161 6 C -0.127 4.127 7 C -0.089 4.089 8 C -0.001 4.001 9 H 0.066 0.934 10 C -0.188 4.188 11 N -0.222 5.222 12 C -0.085 4.085 13 C -0.151 4.151 14 C 0.191 3.809 15 O -0.412 6.412 16 C -0.575 4.575 17 H 0.066 0.934 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.056 4.056 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.226 0.774 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.120 12.277 -10.074 17.019 hybrid contribution 0.723 -1.146 1.025 1.699 sum -5.398 11.130 -9.049 15.326 Atomic orbital electron populations 1.20885 0.89874 1.03838 1.02599 1.20031 0.97195 0.92321 0.99862 1.21271 0.94388 0.97820 1.01158 1.21399 0.94711 0.98229 0.99722 1.21362 1.00505 0.92727 1.01510 1.21167 0.94450 0.98458 0.98661 1.19722 0.93820 0.94034 1.01298 1.20810 0.93256 0.88977 0.97051 0.93361 1.21768 1.01932 1.01913 0.93213 1.65313 1.40999 1.02378 1.13553 1.23055 0.95200 0.90819 0.99418 1.22621 0.97834 0.98072 0.96530 1.19557 0.91166 0.90491 0.79655 1.86087 1.80979 1.42062 1.32119 1.21826 0.92611 1.01340 1.41730 0.93358 1.25642 1.02231 0.95209 0.94228 1.69781 1.36149 1.06668 1.42959 0.85544 0.80696 0.77907 0.77665 1.19849 1.20546 1.20365 1.22682 0.98157 0.96837 0.87876 0.91398 0.89458 0.91104 0.83659 0.83873 0.85543 0.87063 0.91604 0.90317 0.92563 0.89497 0.93871 0.93272 0.94022 0.77411 0.92333 0.96054 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.20 71.24 0.66 -1.63 16 2 C -0.09 -2.41 5.88 -19.86 -0.12 -2.53 16 3 C -0.13 -2.95 9.70 22.27 0.22 -2.73 16 4 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 5 C -0.14 -4.10 10.05 22.27 0.22 -3.87 16 6 C -0.11 -3.66 7.95 22.27 0.18 -3.48 16 7 C -0.09 -2.74 4.46 -19.86 -0.09 -2.83 16 8 C 0.11 3.35 1.35 44.17 0.06 3.41 16 9 H 0.05 1.49 6.69 -2.39 -0.02 1.48 16 10 C -0.13 -3.32 8.89 71.98 0.64 -2.68 16 11 N -0.50 -19.27 4.18 -860.69 -3.60 -22.87 16 12 C 0.04 1.62 5.39 86.45 0.47 2.09 16 13 C -0.11 -5.30 5.55 31.49 0.17 -5.12 16 14 C 0.23 11.90 1.05 -10.65 -0.01 11.89 16 15 O -0.60 -32.88 12.94 -148.98 -1.93 -34.81 16 16 C -0.54 -29.92 8.10 25.60 0.21 -29.71 16 17 H 0.05 2.75 7.53 -2.91 -0.02 2.73 16 18 C 0.03 1.43 5.02 84.66 0.43 1.86 16 19 N -0.91 -50.10 10.82 21.45 0.23 -49.87 16 20 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 C 0.07 3.30 4.88 86.45 0.42 3.72 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 27 H 0.07 1.35 5.63 -2.39 -0.01 1.34 16 28 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.11 4.29 7.20 -2.91 -0.02 4.27 16 32 H 0.06 1.56 6.97 -2.39 -0.02 1.54 16 33 H 0.08 1.63 7.15 -2.39 -0.02 1.61 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 2.97 7.67 -2.39 -0.02 2.95 16 36 H 0.04 1.52 7.96 -2.39 -0.02 1.50 16 37 H 0.05 2.55 7.24 -2.39 -0.02 2.53 16 38 H 0.04 1.99 7.98 -2.38 -0.02 1.97 16 39 H 0.38 20.73 7.33 -74.06 -0.54 20.18 16 40 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.02 0.97 7.86 -2.39 -0.02 0.95 16 42 H 0.06 3.01 6.39 -2.39 -0.02 2.99 16 Total: -1.00 -60.82 326.80 0.87 -59.95 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.46 Total: 36.20 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 3.68 Total: -34.32 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -3.37 Total: -72.74 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.93 Total: -34.81 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -60.82 0.87 -59.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.280 kcal (2) G-P(sol) polarization free energy of solvation -60.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds