Wall clock time and date at job start Mon Mar 30 2020 02:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38259 * 120.00424 * 2 1 4 4 C 1.38215 * 120.00250 * 180.27558 * 3 2 1 5 5 C 1.38257 * 119.99743 * 359.74716 * 4 3 2 6 6 C 1.38212 * 120.00268 * 359.97438 * 5 4 3 7 7 C 1.38222 * 119.99982 * 179.74627 * 2 1 3 8 8 C 1.50696 * 119.99935 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.47121 * 30.51665 * 8 7 2 10 10 C 1.52995 * 109.47331 * 150.52678 * 8 7 2 11 11 N 1.46906 * 109.46808 * 270.52406 * 8 7 2 12 12 C 1.47898 * 111.00240 * 52.94387 * 11 8 7 13 13 C 1.53984 * 107.06223 * 214.15556 * 12 11 8 14 14 C 1.54602 * 105.13790 * 1.22635 * 13 12 11 15 15 O 1.42901 * 110.72175 * 263.41775 * 14 13 12 16 16 C 1.50696 * 110.72318 * 140.31554 * 14 13 12 17 17 H 1.07995 * 120.00017 * 241.45219 * 16 14 13 18 18 C 1.37884 * 120.00268 * 61.45324 * 16 14 13 19 19 N 1.31514 * 119.99768 * 0.02562 * 18 16 14 20 20 Si 1.86790 * 120.00077 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47217 * 89.99856 * 20 18 16 22 22 H 1.48501 * 109.47381 * 210.00048 * 20 18 16 23 23 H 1.48499 * 109.47608 * 330.00231 * 20 18 16 24 24 C 1.48529 * 111.00122 * 295.54796 * 11 8 7 25 25 H 1.08998 * 109.47672 * 274.81498 * 1 2 3 26 26 H 1.09009 * 109.47380 * 34.82058 * 1 2 3 27 27 H 1.09008 * 109.47429 * 154.81294 * 1 2 3 28 28 H 1.07998 * 119.99621 * 0.04267 * 3 2 1 29 29 H 1.07992 * 119.99912 * 179.76450 * 4 3 2 30 30 H 1.07998 * 120.00125 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.00191 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47088 * 299.99505 * 10 8 7 33 33 H 1.08994 * 109.47746 * 59.99806 * 10 8 7 34 34 H 1.09007 * 109.47070 * 180.02562 * 10 8 7 35 35 H 1.08998 * 109.91868 * 333.51369 * 12 11 8 36 36 H 1.09003 * 109.91587 * 94.79790 * 12 11 8 37 37 H 1.09000 * 110.31374 * 120.14228 * 13 12 11 38 38 H 1.08998 * 110.31140 * 242.30981 * 13 12 11 39 39 H 0.96696 * 114.00545 * 298.54678 * 15 14 13 40 40 H 0.96996 * 119.99733 * 180.02562 * 19 18 16 41 41 H 1.09007 * 110.66580 * 278.15704 * 24 11 8 42 42 H 1.09005 * 110.66822 * 41.28731 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2716 -0.0001 -0.0062 6 6 3.5805 -1.1970 -0.0004 7 6 2.1980 -1.1970 0.0053 8 6 1.4445 -2.5021 0.0105 9 1 0.4963 -2.3763 -0.5122 10 6 2.2773 -3.5746 -0.6944 11 7 1.1882 -2.9139 1.3972 12 6 0.5314 -1.8299 2.1593 13 6 1.0512 -1.9158 3.6062 14 6 2.0591 -3.0882 3.6042 15 8 1.4351 -4.2922 4.0547 16 6 3.2591 -2.7611 4.4550 17 1 4.2418 -2.7188 4.0091 18 6 3.1025 -2.5160 5.8028 19 7 1.9059 -2.5681 6.3459 20 14 4.5901 -2.1114 6.8575 21 1 4.8044 -0.6420 6.8683 22 1 4.3579 -2.5880 8.2446 23 1 5.7910 -2.7824 6.2981 24 6 2.4589 -3.1986 2.1114 25 1 -0.3634 0.0863 1.0240 26 1 -0.3634 0.8437 -0.5868 27 1 -0.3634 -0.9300 -0.4374 28 1 1.6583 2.1326 0.0007 29 1 4.1204 2.1325 -0.0096 30 1 5.3516 -0.0002 -0.0103 31 1 4.1205 -2.1324 -0.0004 32 1 2.4674 -3.2691 -1.7233 33 1 3.2253 -3.7005 -0.1716 34 1 1.7320 -4.5185 -0.6910 35 1 0.7910 -0.8630 1.7283 36 1 -0.5498 -1.9677 2.1443 37 1 1.5508 -0.9879 3.8846 38 1 0.2297 -2.1244 4.2916 39 1 1.0986 -4.2460 4.9600 40 1 1.7957 -2.3953 7.2940 41 1 2.8128 -4.2036 1.8813 42 1 3.2163 -2.4560 1.8601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:25 Heat of formation + Delta-G solvation = -29.303699 kcal Electronic energy + Delta-G solvation = -22756.565355 eV Core-core repulsion = 19700.820883 eV Total energy + Delta-G solvation = -3055.744472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60608 -39.25227 -36.89918 -34.16678 -34.01558 -33.83702 -30.78465 -29.90491 -28.97776 -27.69914 -26.81166 -24.48072 -22.60657 -22.29872 -21.35678 -20.30299 -18.99022 -17.63901 -17.19380 -16.94689 -16.42839 -16.35246 -15.84650 -15.44166 -14.91727 -14.80260 -14.49678 -14.02014 -13.96310 -13.69488 -13.57483 -13.31623 -13.13151 -13.04375 -12.83571 -12.66993 -12.52262 -12.47214 -12.30464 -12.19270 -11.93231 -11.91872 -11.48989 -11.35420 -11.03215 -10.59270 -10.08194 -9.65937 -9.48664 -9.12349 -8.21319 -6.36650 0.46441 0.50784 1.36920 1.39062 1.48698 2.36782 2.85258 3.03082 3.26789 3.80204 3.89845 4.00562 4.05125 4.08068 4.19973 4.26980 4.35922 4.44883 4.49738 4.56156 4.68254 4.77333 4.79047 4.81975 4.89177 4.95830 4.96594 5.08052 5.14880 5.18642 5.27548 5.31360 5.34338 5.51361 5.57314 5.60842 5.64677 5.71068 5.80931 5.98401 6.16823 6.22855 6.34867 6.68949 7.34702 7.48871 8.84096 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.006848 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.028048 B = 4087.590804 C = 4587.701305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.089 4.089 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.102 3.898 9 H 0.102 0.898 10 C -0.140 4.140 11 N -0.502 5.502 12 C 0.021 3.979 13 C -0.116 4.116 14 C 0.238 3.762 15 O -0.590 6.590 16 C -0.559 4.559 17 H 0.050 0.950 18 C 0.030 3.970 19 N -0.911 5.911 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.272 1.272 24 C 0.062 3.938 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.370 0.630 40 H 0.268 0.732 41 H 0.060 0.940 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 6.854 -13.681 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.139 4.139 7 C -0.124 4.124 8 C -0.006 4.006 9 H 0.119 0.881 10 C -0.198 4.198 11 N -0.225 5.225 12 C -0.106 4.106 13 C -0.155 4.155 14 C 0.198 3.802 15 O -0.398 6.398 16 C -0.598 4.598 17 H 0.068 0.932 18 C -0.171 4.171 19 N -0.550 5.550 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.197 1.197 24 C -0.066 4.066 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.218 0.782 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.665 6.176 -14.164 15.467 hybrid contribution 1.165 0.998 1.709 2.296 sum 0.499 7.174 -12.455 14.382 Atomic orbital electron populations 1.21148 0.90201 1.03814 1.02768 1.20025 0.97018 0.92697 0.99243 1.21301 0.94679 0.97913 1.00996 1.21415 0.94578 0.98617 0.99606 1.21389 1.00735 0.92629 1.00810 1.21285 0.94068 0.98753 0.99747 1.20518 0.94469 0.96155 1.01263 1.21078 0.98620 0.90444 0.90457 0.88066 1.21881 0.99426 0.98291 1.00161 1.65161 1.19606 1.36516 1.01207 1.23396 0.98698 0.94947 0.93582 1.22654 0.98687 0.99303 0.94862 1.19603 0.89112 0.81380 0.90083 1.86128 1.79419 1.39521 1.34684 1.21855 0.94463 1.48765 0.94694 0.93157 1.25672 0.98594 0.93933 0.98855 1.69824 1.22699 1.49566 1.12935 0.85607 0.79905 0.78385 0.78038 1.20108 1.20416 1.19672 1.23038 0.91379 0.99437 0.92719 0.90990 0.89715 0.90807 0.84179 0.84038 0.84803 0.86069 0.90413 0.93095 0.91743 0.90537 0.91186 0.94740 0.93888 0.78177 0.92279 0.92160 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.39 71.23 0.60 -2.22 16 2 C -0.09 -2.44 4.58 -19.87 -0.09 -2.53 16 3 C -0.13 -3.28 9.72 22.27 0.22 -3.06 16 4 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 5 C -0.14 -3.72 10.05 22.27 0.22 -3.49 16 6 C -0.12 -3.61 7.26 22.27 0.16 -3.45 16 7 C -0.12 -3.69 3.92 -19.87 -0.08 -3.77 16 8 C 0.10 3.11 2.61 44.17 0.12 3.22 16 9 H 0.10 2.78 5.92 -2.39 -0.01 2.77 16 10 C -0.14 -3.81 8.21 71.98 0.59 -3.22 16 11 N -0.50 -19.41 5.36 -862.27 -4.62 -24.03 16 12 C 0.02 0.82 5.18 86.44 0.45 1.27 16 13 C -0.12 -5.65 5.26 31.47 0.17 -5.48 16 14 C 0.24 12.35 0.95 -10.34 -0.01 12.34 16 15 O -0.59 -32.60 13.09 -148.98 -1.95 -34.55 16 16 C -0.56 -31.16 8.14 25.60 0.21 -30.95 16 17 H 0.05 2.80 7.78 -2.91 -0.02 2.78 16 18 C 0.03 1.63 5.28 84.66 0.45 2.08 16 19 N -0.91 -50.26 11.00 21.45 0.24 -50.02 16 20 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.06 2.75 4.19 86.65 0.36 3.11 16 25 H 0.07 1.77 6.32 -2.39 -0.02 1.76 16 26 H 0.08 1.51 8.12 -2.38 -0.02 1.49 16 27 H 0.07 1.64 5.79 -2.38 -0.01 1.62 16 28 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.12 3.58 5.84 -2.91 -0.02 3.56 16 32 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 33 H 0.05 1.47 5.22 -2.39 -0.01 1.46 16 34 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.08 2.75 2.74 -2.39 -0.01 2.74 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.03 1.78 7.84 -2.39 -0.02 1.76 16 38 H 0.04 2.21 7.98 -2.39 -0.02 2.19 16 39 H 0.37 20.76 7.46 -74.06 -0.55 20.21 16 40 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 41 H 0.06 2.74 7.66 -2.38 -0.02 2.72 16 42 H 0.06 2.43 5.06 -2.38 -0.01 2.42 16 Total: -1.00 -61.41 314.72 -0.25 -61.65 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: 0.48 Total: 40.65 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 3.58 Total: -38.99 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -4.38 Total: -74.05 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.95 Total: -34.55 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -61.41 -0.25 -61.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.347 kcal (2) G-P(sol) polarization free energy of solvation -61.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds