Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.27920 * 3 2 1 5 5 C 1.38259 * 119.99788 * 359.45940 * 4 3 2 6 6 C 1.38212 * 120.00071 * 0.53594 * 5 4 3 7 7 C 1.38214 * 119.99514 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00249 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.46630 * 39.99898 * 8 7 2 10 10 C 1.52996 * 109.47166 * 279.99880 * 8 7 2 11 11 N 1.46899 * 109.47090 * 160.00048 * 8 7 2 12 12 C 1.47853 * 111.00022 * 300.84404 * 11 8 7 13 13 C 1.54907 * 104.79275 * 213.63785 * 12 11 8 14 14 C 1.55138 * 101.65539 * 37.07217 * 13 12 11 15 15 O 1.42898 * 110.70674 * 82.72753 * 14 13 12 16 16 C 1.50700 * 110.85140 * 205.89389 * 14 13 12 17 17 H 1.08002 * 119.99905 * 113.68629 * 16 14 13 18 18 C 1.37877 * 120.00036 * 293.67824 * 16 14 13 19 19 N 1.31516 * 119.99964 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99928 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47073 * 60.00670 * 20 18 16 22 22 H 1.48502 * 109.46968 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47449 * 300.00151 * 20 18 16 24 24 C 1.47442 * 111.00140 * 180.02562 * 11 8 7 25 25 H 1.08999 * 109.46667 * 90.00239 * 1 2 3 26 26 H 1.08988 * 109.47584 * 210.00451 * 1 2 3 27 27 H 1.09000 * 109.47013 * 330.00967 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.08000 * 119.99951 * 180.30218 * 5 4 3 31 31 H 1.08002 * 120.00332 * 179.76386 * 6 5 4 32 32 H 1.09004 * 109.47007 * 60.00174 * 10 8 7 33 33 H 1.09000 * 109.47437 * 179.97438 * 10 8 7 34 34 H 1.08998 * 109.47097 * 300.00299 * 10 8 7 35 35 H 1.09002 * 110.37348 * 332.46645 * 12 11 8 36 36 H 1.08991 * 110.37542 * 94.80694 * 12 11 8 37 37 H 1.08997 * 110.99267 * 278.97499 * 13 12 11 38 38 H 1.09009 * 111.01624 * 155.17293 * 13 12 11 39 39 H 0.96697 * 114.00282 * 66.40103 * 15 14 13 40 40 H 0.97000 * 119.99815 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88711 * 242.66472 * 24 11 8 42 42 H 1.09006 * 109.88511 * 3.84820 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 -0.0003 7 6 2.1980 -1.1970 -0.0005 8 6 1.4444 -2.5021 -0.0005 9 1 0.5808 -2.4229 -0.6607 10 6 0.9731 -2.8188 1.4201 11 7 2.3265 -3.5768 -0.4748 12 6 2.8188 -3.2946 -1.8401 13 6 2.9379 -4.6848 -2.5129 14 6 1.7056 -5.4231 -1.9272 15 8 0.5247 -5.0973 -2.6630 16 6 1.9291 -6.9133 -1.9145 17 1 2.0071 -7.4397 -0.9747 18 6 2.0339 -7.6049 -3.1027 19 7 1.9393 -6.9639 -4.2472 20 14 2.3103 -9.4523 -3.0869 21 1 1.1827 -10.1155 -2.3843 22 1 2.3874 -9.9531 -4.4828 23 1 3.5810 -9.7567 -2.3814 24 6 1.6213 -4.8716 -0.4889 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0104 30 1 5.3517 -0.0002 0.0000 31 1 4.1205 -2.1324 0.0001 32 1 0.3186 -2.0214 1.7720 33 1 0.4276 -3.7626 1.4201 34 1 1.8368 -2.8979 2.0803 35 1 2.1052 -2.6718 -2.3796 36 1 3.7932 -2.8080 -1.7991 37 1 3.8643 -5.1807 -2.2231 38 1 2.8644 -4.6019 -3.5973 39 1 0.5270 -5.4212 -3.5741 40 1 2.0134 -7.4503 -5.0831 41 1 2.1029 -5.5636 0.2021 42 1 0.5781 -4.7287 -0.2071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -23.770663 kcal Electronic energy + Delta-G solvation = -22107.097285 eV Core-core repulsion = 19051.592743 eV Total energy + Delta-G solvation = -3055.504542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88336 -38.05783 -35.20871 -33.13233 -32.06596 -31.81472 -29.90140 -28.16340 -27.40288 -26.78818 -24.73470 -23.14721 -21.35629 -20.76829 -19.69805 -19.04692 -17.15352 -16.38042 -15.89822 -15.11331 -14.87488 -14.34694 -14.32715 -13.92724 -13.78991 -13.36942 -13.06645 -12.92556 -12.75531 -12.14926 -12.05346 -11.97571 -11.68216 -11.62461 -11.27957 -11.24126 -11.18411 -10.86495 -10.81228 -10.53401 -10.45690 -10.38754 -10.07909 -9.88371 -9.23608 -8.60150 -8.55420 -8.37666 -8.06553 -7.62508 -6.20368 -4.27520 1.53395 1.61649 3.24888 3.29613 3.32652 3.94927 4.30905 4.56250 4.94123 4.99651 5.06443 5.11873 5.29005 5.37666 5.53301 5.63046 5.69104 5.72028 5.73609 5.82390 5.89921 6.03694 6.11061 6.15850 6.18916 6.24317 6.30277 6.39047 6.47664 6.51924 6.56324 6.66705 6.76725 6.90797 6.97174 7.10525 7.23108 7.44060 7.50081 7.69254 7.81120 7.86350 8.15854 8.73702 9.40492 9.53638 10.86834 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.004603 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.202804 B = 6080.890236 C = 6296.709651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.092 4.092 7 C -0.068 4.068 8 C 0.114 3.886 9 H 0.052 0.948 10 C -0.141 4.141 11 N -0.524 5.524 12 C 0.042 3.958 13 C -0.132 4.132 14 C 0.237 3.763 15 O -0.593 6.593 16 C -0.532 4.532 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.058 3.942 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.383 0.617 40 H 0.267 0.733 41 H 0.079 0.921 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 12.891 7.159 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.110 4.110 7 C -0.068 4.068 8 C 0.005 3.995 9 H 0.070 0.930 10 C -0.199 4.199 11 N -0.248 5.248 12 C -0.085 4.085 13 C -0.171 4.171 14 C 0.197 3.803 15 O -0.403 6.403 16 C -0.570 4.570 17 H 0.080 0.920 18 C -0.132 4.132 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.069 4.069 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.898 13.116 7.883 15.329 hybrid contribution -0.231 -1.138 -1.267 1.718 sum 0.666 11.978 6.617 13.701 Atomic orbital electron populations 1.20905 0.91652 1.02723 1.02422 1.19732 0.95856 0.92669 1.00348 1.20887 0.94237 0.97023 1.02406 1.21038 0.94259 0.97807 1.01353 1.21155 0.99639 0.92673 1.01656 1.21292 0.93892 0.98495 0.97356 1.19772 0.94033 0.93716 0.99285 1.20654 0.93482 0.88687 0.96652 0.93038 1.21897 1.01147 1.01362 0.95451 1.63696 1.35357 1.01881 1.23899 1.23093 0.98492 0.98857 0.88074 1.23172 1.00846 0.92848 1.00190 1.19697 0.81875 0.92387 0.86383 1.86067 1.42423 1.81374 1.30460 1.21585 1.49749 0.92734 0.92966 0.92014 1.25003 0.93874 0.98936 0.95344 1.69586 1.50674 1.36265 0.97499 0.86522 0.78890 0.84753 0.77053 1.20118 1.21200 1.20091 1.22838 0.96364 0.89226 0.98457 0.91268 0.90943 0.91908 0.86646 0.86733 0.86516 0.84415 0.92534 0.91881 0.91932 0.94662 0.91886 0.91874 0.91027 0.76515 0.92251 0.90292 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.24 36.01 0.33 -1.09 16 2 C -0.09 -1.18 5.88 -104.62 -0.61 -1.80 16 3 C -0.13 -1.59 9.70 -39.58 -0.38 -1.97 16 4 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 5 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 6 C -0.09 -1.40 7.92 -39.58 -0.31 -1.71 16 7 C -0.07 -1.05 4.55 -104.62 -0.48 -1.52 16 8 C 0.11 1.91 1.19 -68.87 -0.08 1.83 16 9 H 0.05 0.95 7.24 -51.93 -0.38 0.57 16 10 C -0.14 -2.06 8.80 37.16 0.33 -1.74 16 11 N -0.52 -10.00 4.11 -224.71 -0.92 -10.92 16 12 C 0.04 0.85 5.31 -2.29 -0.01 0.83 16 13 C -0.13 -3.06 5.67 -24.59 -0.14 -3.20 16 14 C 0.24 5.87 0.85 -89.97 -0.08 5.79 16 15 O -0.59 -15.55 13.08 -35.23 -0.46 -16.01 16 16 C -0.53 -14.23 8.22 -34.44 -0.28 -14.51 16 17 H 0.06 1.63 7.53 -52.49 -0.40 1.24 16 18 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 19 N -0.90 -24.10 10.69 55.43 0.59 -23.51 16 20 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.06 1.26 5.49 -2.86 -0.02 1.24 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.86 5.01 -51.94 -0.26 0.60 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.14 2.19 6.22 -52.49 -0.33 1.87 16 32 H 0.06 0.71 6.39 -51.93 -0.33 0.38 16 33 H 0.06 0.94 6.50 -51.93 -0.34 0.61 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.74 7.77 -51.93 -0.40 0.33 16 36 H 0.06 1.16 6.37 -51.93 -0.33 0.83 16 37 H 0.06 1.50 8.05 -51.93 -0.42 1.08 16 38 H 0.07 1.77 7.76 -51.92 -0.40 1.37 16 39 H 0.38 10.29 6.98 45.56 0.32 10.61 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.08 1.70 7.63 -51.93 -0.40 1.31 16 42 H 0.05 1.06 6.28 -51.93 -0.33 0.73 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -27.34 323.53 -9.22 -36.56 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.66 Total: 13.52 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.63 Total: -20.17 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.33 Total: -34.43 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.46 Total: -16.01 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.34 -9.22 -36.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.794 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds