Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.27920 * 3 2 1 5 5 C 1.38259 * 119.99788 * 359.45940 * 4 3 2 6 6 C 1.38212 * 120.00071 * 0.53594 * 5 4 3 7 7 C 1.38214 * 119.99514 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00249 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.46630 * 39.99898 * 8 7 2 10 10 C 1.52996 * 109.47166 * 279.99880 * 8 7 2 11 11 N 1.46899 * 109.47090 * 160.00048 * 8 7 2 12 12 C 1.47853 * 111.00022 * 300.84404 * 11 8 7 13 13 C 1.54907 * 104.79275 * 213.63785 * 12 11 8 14 14 C 1.55138 * 101.65539 * 37.07217 * 13 12 11 15 15 O 1.42898 * 110.70674 * 82.72753 * 14 13 12 16 16 C 1.50700 * 110.85140 * 205.89389 * 14 13 12 17 17 H 1.08002 * 119.99905 * 113.68629 * 16 14 13 18 18 C 1.37877 * 120.00036 * 293.67824 * 16 14 13 19 19 N 1.31516 * 119.99964 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99928 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47073 * 60.00670 * 20 18 16 22 22 H 1.48502 * 109.46968 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47449 * 300.00151 * 20 18 16 24 24 C 1.47442 * 111.00140 * 180.02562 * 11 8 7 25 25 H 1.08999 * 109.46667 * 90.00239 * 1 2 3 26 26 H 1.08988 * 109.47584 * 210.00451 * 1 2 3 27 27 H 1.09000 * 109.47013 * 330.00967 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.08000 * 119.99951 * 180.30218 * 5 4 3 31 31 H 1.08002 * 120.00332 * 179.76386 * 6 5 4 32 32 H 1.09004 * 109.47007 * 60.00174 * 10 8 7 33 33 H 1.09000 * 109.47437 * 179.97438 * 10 8 7 34 34 H 1.08998 * 109.47097 * 300.00299 * 10 8 7 35 35 H 1.09002 * 110.37348 * 332.46645 * 12 11 8 36 36 H 1.08991 * 110.37542 * 94.80694 * 12 11 8 37 37 H 1.08997 * 110.99267 * 278.97499 * 13 12 11 38 38 H 1.09009 * 111.01624 * 155.17293 * 13 12 11 39 39 H 0.96697 * 114.00282 * 66.40103 * 15 14 13 40 40 H 0.97000 * 119.99815 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88711 * 242.66472 * 24 11 8 42 42 H 1.09006 * 109.88511 * 3.84820 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 -0.0003 7 6 2.1980 -1.1970 -0.0005 8 6 1.4444 -2.5021 -0.0005 9 1 0.5808 -2.4229 -0.6607 10 6 0.9731 -2.8188 1.4201 11 7 2.3265 -3.5768 -0.4748 12 6 2.8188 -3.2946 -1.8401 13 6 2.9379 -4.6848 -2.5129 14 6 1.7056 -5.4231 -1.9272 15 8 0.5247 -5.0973 -2.6630 16 6 1.9291 -6.9133 -1.9145 17 1 2.0071 -7.4397 -0.9747 18 6 2.0339 -7.6049 -3.1027 19 7 1.9393 -6.9639 -4.2472 20 14 2.3103 -9.4523 -3.0869 21 1 1.1827 -10.1155 -2.3843 22 1 2.3874 -9.9531 -4.4828 23 1 3.5810 -9.7567 -2.3814 24 6 1.6213 -4.8716 -0.4889 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0104 30 1 5.3517 -0.0002 0.0000 31 1 4.1205 -2.1324 0.0001 32 1 0.3186 -2.0214 1.7720 33 1 0.4276 -3.7626 1.4201 34 1 1.8368 -2.8979 2.0803 35 1 2.1052 -2.6718 -2.3796 36 1 3.7932 -2.8080 -1.7991 37 1 3.8643 -5.1807 -2.2231 38 1 2.8644 -4.6019 -3.5973 39 1 0.5270 -5.4212 -3.5741 40 1 2.0134 -7.4503 -5.0831 41 1 2.1029 -5.5636 0.2021 42 1 0.5781 -4.7287 -0.2071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -39.989918 kcal Electronic energy + Delta-G solvation = -22107.800604 eV Core-core repulsion = 19051.592743 eV Total energy + Delta-G solvation = -3056.207862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15254 -39.57669 -36.89407 -34.42003 -34.12830 -33.09096 -31.17226 -29.94548 -28.94343 -27.81076 -26.56035 -24.39427 -22.59618 -22.24015 -21.25440 -20.62778 -19.15062 -17.60441 -17.26559 -16.93546 -16.28283 -15.94611 -15.74678 -15.36688 -15.17612 -14.62233 -14.48948 -14.23963 -13.92109 -13.76473 -13.57135 -13.28112 -13.14283 -12.98958 -12.87519 -12.76888 -12.62646 -12.48039 -12.32492 -12.28381 -12.08167 -11.84373 -11.69133 -11.38202 -11.14740 -10.62479 -10.10905 -9.56827 -9.43591 -9.21901 -8.22342 -6.37490 0.50998 0.58717 1.42107 1.42476 1.50520 2.38418 2.90964 3.01351 3.06984 3.76153 3.88682 4.04662 4.14301 4.17692 4.26574 4.35601 4.37027 4.43912 4.47897 4.51764 4.59175 4.72459 4.74980 4.79419 4.85075 4.90476 5.04959 5.05785 5.11204 5.19678 5.25348 5.32681 5.39580 5.47547 5.52980 5.65766 5.70501 5.80071 5.80284 5.97353 6.18948 6.22478 6.32065 6.67082 7.33421 7.42803 8.83046 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.004603 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.202804 B = 6080.890236 C = 6296.709651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.088 4.088 8 C 0.116 3.884 9 H 0.033 0.967 10 C -0.135 4.135 11 N -0.516 5.516 12 C 0.058 3.942 13 C -0.125 4.125 14 C 0.221 3.779 15 O -0.600 6.600 16 C -0.558 4.558 17 H 0.058 0.942 18 C 0.029 3.971 19 N -0.917 5.917 20 Si 0.961 3.039 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.271 1.271 24 C 0.067 3.933 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.377 0.623 40 H 0.269 0.731 41 H 0.077 0.923 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 14.435 8.076 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.129 4.129 7 C -0.088 4.088 8 C 0.008 3.992 9 H 0.051 0.949 10 C -0.192 4.192 11 N -0.241 5.241 12 C -0.069 4.069 13 C -0.164 4.164 14 C 0.181 3.819 15 O -0.410 6.410 16 C -0.597 4.597 17 H 0.076 0.924 18 C -0.171 4.171 19 N -0.557 5.557 20 Si 0.786 3.214 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.061 4.061 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.160 0.840 29 H 0.163 0.837 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.227 0.773 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.282 14.672 8.813 17.164 hybrid contribution -0.348 -1.543 -1.557 2.219 sum 0.935 13.130 7.256 15.030 Atomic orbital electron populations 1.20928 0.90559 1.03672 1.02461 1.19981 0.96866 0.92602 1.00172 1.21250 0.94671 0.97513 1.01150 1.21427 0.94422 0.98610 0.99670 1.21405 1.00745 0.92338 1.01038 1.21256 0.93863 0.98876 0.98892 1.19706 0.94271 0.93468 1.01367 1.20671 0.92574 0.88803 0.97173 0.94940 1.21857 1.01425 1.01774 0.94176 1.63725 1.35639 1.01732 1.22959 1.22926 0.99202 0.96667 0.88106 1.22992 0.99764 0.94622 0.99033 1.19955 0.81835 0.92174 0.87905 1.86062 1.43432 1.81385 1.30121 1.21875 1.50629 0.94017 0.93143 0.92424 1.25707 0.93475 1.02929 0.94980 1.69676 1.50607 1.37591 0.97828 0.85568 0.78783 0.79849 0.77160 1.19907 1.20658 1.19629 1.22686 0.96551 0.90422 0.96418 0.91646 0.91508 0.89462 0.83956 0.83743 0.84635 0.85919 0.90339 0.92652 0.91838 0.95765 0.90045 0.92851 0.93077 0.77270 0.92114 0.90434 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.24 71.24 0.66 -1.95 16 2 C -0.10 -2.46 5.88 -19.86 -0.12 -2.58 16 3 C -0.13 -2.78 9.70 22.27 0.22 -2.56 16 4 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 5 C -0.14 -3.29 10.05 22.27 0.22 -3.07 16 6 C -0.11 -3.23 7.92 22.27 0.18 -3.06 16 7 C -0.09 -2.63 4.55 -19.86 -0.09 -2.72 16 8 C 0.12 3.88 1.19 44.17 0.05 3.93 16 9 H 0.03 1.21 7.24 -2.39 -0.02 1.20 16 10 C -0.14 -3.86 8.80 71.98 0.63 -3.23 16 11 N -0.52 -19.89 4.11 -864.84 -3.56 -23.45 16 12 C 0.06 2.37 5.31 86.77 0.46 2.84 16 13 C -0.13 -5.99 5.67 31.98 0.18 -5.81 16 14 C 0.22 11.24 0.85 -10.38 -0.01 11.23 16 15 O -0.60 -32.40 13.08 -148.98 -1.95 -34.35 16 16 C -0.56 -30.41 8.22 25.60 0.21 -30.20 16 17 H 0.06 3.10 7.53 -2.91 -0.02 3.08 16 18 C 0.03 1.55 5.28 84.65 0.45 2.00 16 19 N -0.92 -49.83 10.69 21.45 0.23 -49.60 16 20 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.07 2.94 5.49 86.63 0.48 3.42 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.50 5.01 -2.39 -0.01 1.49 16 27 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 28 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.12 3.87 6.22 -2.91 -0.02 3.86 16 32 H 0.08 1.88 6.39 -2.38 -0.02 1.86 16 33 H 0.05 1.64 6.50 -2.39 -0.02 1.63 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.02 1.03 7.77 -2.39 -0.02 1.01 16 36 H 0.08 3.01 6.37 -2.39 -0.02 2.99 16 37 H 0.05 2.60 8.05 -2.39 -0.02 2.59 16 38 H 0.05 2.61 7.76 -2.38 -0.02 2.59 16 39 H 0.38 20.94 6.98 -74.06 -0.52 20.42 16 40 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.08 3.40 7.63 -2.39 -0.02 3.38 16 42 H 0.05 2.08 6.28 -2.38 -0.01 2.07 16 Total: -1.00 -58.69 323.53 0.99 -57.70 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: 0.50 Total: 39.29 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 3.74 Total: -34.11 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -3.33 Total: -73.05 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.95 Total: -34.35 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -58.69 0.99 -57.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.706 kcal (2) G-P(sol) polarization free energy of solvation -58.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds