Wall clock time and date at job start Mon Mar 30 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38233 * 119.99878 * 2 1 4 4 C 1.38235 * 119.99712 * 180.27849 * 3 2 1 5 5 C 1.38231 * 120.00163 * 359.46762 * 4 3 2 6 6 C 1.38241 * 120.00050 * 0.55160 * 5 4 3 7 7 C 1.50693 * 120.00297 * 179.72244 * 6 5 4 8 8 C 1.38237 * 119.99684 * 359.70468 * 6 5 4 9 9 C 1.50696 * 120.00150 * 179.97438 * 8 6 5 10 10 N 1.46897 * 109.47543 * 260.00574 * 9 8 6 11 11 C 1.47449 * 110.99910 * 76.68488 * 10 9 8 12 12 C 1.54314 * 107.23364 * 123.25975 * 11 10 9 13 13 C 1.55142 * 103.02003 * 22.28262 * 12 11 10 14 14 O 1.42904 * 110.98902 * 82.43627 * 13 12 11 15 15 C 1.50698 * 110.99460 * 206.21632 * 13 12 11 16 16 H 1.07997 * 119.99989 * 118.54395 * 15 13 12 17 17 C 1.37873 * 120.00110 * 298.55113 * 15 13 12 18 18 N 1.31517 * 119.99891 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00120 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47350 * 89.99590 * 19 17 15 21 21 H 1.48504 * 109.46908 * 209.99780 * 19 17 15 22 22 H 1.48500 * 109.46910 * 329.99188 * 19 17 15 23 23 C 1.47841 * 111.00404 * 197.52828 * 10 9 8 24 24 H 1.09001 * 109.47623 * 90.00144 * 1 2 3 25 25 H 1.09004 * 109.47478 * 210.00035 * 1 2 3 26 26 H 1.09005 * 109.47185 * 330.00220 * 1 2 3 27 27 H 1.07995 * 120.00226 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.99842 * 179.72037 * 4 3 2 29 29 H 1.07998 * 120.00548 * 180.27773 * 5 4 3 30 30 H 1.08999 * 109.47175 * 270.10408 * 7 6 5 31 31 H 1.09003 * 109.47296 * 30.10520 * 7 6 5 32 32 H 1.09001 * 109.47174 * 150.10320 * 7 6 5 33 33 H 1.09003 * 109.46705 * 20.00325 * 9 8 6 34 34 H 1.09000 * 109.47178 * 140.00293 * 9 8 6 35 35 H 1.09003 * 109.88609 * 242.66929 * 11 10 9 36 36 H 1.08995 * 109.88652 * 3.69041 * 11 10 9 37 37 H 1.08996 * 110.70729 * 140.66300 * 12 11 10 38 38 H 1.08999 * 110.71051 * 263.72867 * 12 11 10 39 39 H 0.96699 * 113.99633 * 61.46034 * 14 13 12 40 40 H 0.97002 * 119.99696 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.36983 * 332.46668 * 23 10 9 42 42 H 1.09000 * 110.37432 * 94.80224 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0058 5 6 4.2716 0.0000 -0.0005 6 6 3.5805 -1.1972 -0.0009 7 6 4.3340 -2.5023 -0.0015 8 6 2.1981 -1.1972 -0.0005 9 6 1.4446 -2.5022 -0.0015 10 7 0.9911 -2.8049 -1.3655 11 6 2.1039 -3.3050 -2.1936 12 6 1.6844 -4.6872 -2.7366 13 6 0.1360 -4.6412 -2.6508 14 8 -0.4194 -3.9662 -3.7813 15 6 -0.4388 -6.0278 -2.5176 16 1 -1.0101 -6.2936 -1.6404 17 6 -0.2354 -6.9573 -3.5154 18 7 0.4600 -6.6335 -4.5837 19 14 -0.9473 -8.6764 -3.3499 20 1 -2.3092 -8.7071 -3.9408 21 1 -0.0759 -9.6439 -4.0639 22 1 -1.0225 -9.0447 -1.9132 23 6 -0.0813 -3.8224 -1.3539 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 -0.0104 29 1 5.3516 0.0000 -0.0005 30 1 4.5172 -2.8156 -1.0292 31 1 5.2856 -2.3726 0.5140 32 1 3.7441 -3.2626 0.5105 33 1 2.0994 -3.3001 0.3491 34 1 0.5814 -2.4239 0.6594 35 1 2.2862 -2.6207 -3.0222 36 1 3.0042 -3.4000 -1.5865 37 1 2.0096 -4.8104 -3.7695 38 1 2.0841 -5.4849 -2.1104 39 1 -0.2252 -4.3915 -4.6278 40 1 0.6028 -7.2874 -5.2859 41 1 0.0149 -4.4651 -0.4788 42 1 -1.0599 -3.3426 -1.3675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:14 Heat of formation + Delta-G solvation = -25.123655 kcal Electronic energy + Delta-G solvation = -21997.009181 eV Core-core repulsion = 18941.445969 eV Total energy + Delta-G solvation = -3055.563212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83785 -38.00842 -34.84927 -33.45039 -32.32879 -32.10923 -29.49367 -28.07235 -27.33560 -26.47498 -25.29490 -23.85576 -21.00011 -20.50061 -19.57250 -19.49515 -17.02656 -16.07458 -15.91457 -15.13503 -14.87449 -14.62011 -14.46767 -13.89367 -13.46506 -13.37665 -13.06313 -12.77650 -12.67326 -12.44369 -12.26541 -11.98844 -11.74215 -11.64572 -11.44911 -11.20063 -11.07435 -11.04819 -10.77864 -10.60903 -10.43485 -10.37345 -10.20447 -9.78009 -9.18165 -8.60071 -8.38788 -8.34716 -8.04358 -7.50746 -6.19966 -4.28316 1.53942 1.57111 3.22266 3.29427 3.32156 3.87802 4.30137 4.79854 4.93483 4.97616 5.07667 5.09901 5.18158 5.31933 5.46105 5.61725 5.64285 5.74937 5.78184 5.83666 5.85064 5.93939 5.97797 6.10658 6.14674 6.20046 6.21708 6.35032 6.47352 6.53443 6.63962 6.70608 6.73022 6.90711 6.94320 7.11124 7.22294 7.44062 7.51712 7.69451 7.80508 7.85656 8.19105 8.74083 9.40483 9.54306 10.86815 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031612 B = 0.004584 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.531473 B = 6106.118845 C = 6438.936570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.058 4.058 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.132 4.132 6 C -0.076 4.076 7 C -0.123 4.123 8 C -0.067 4.067 9 C 0.080 3.920 10 N -0.516 5.516 11 C 0.036 3.964 12 C -0.144 4.144 13 C 0.253 3.747 14 O -0.579 6.579 15 C -0.536 4.536 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.058 3.942 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.376 0.624 40 H 0.266 0.734 41 H 0.045 0.955 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 10.597 8.714 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.058 4.058 3 C -0.151 4.151 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.076 4.076 7 C -0.179 4.179 8 C -0.068 4.068 9 C -0.048 4.048 10 N -0.240 5.240 11 C -0.091 4.091 12 C -0.183 4.183 13 C 0.212 3.788 14 O -0.386 6.386 15 C -0.575 4.575 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.069 4.069 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.225 0.775 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.735 11.382 8.813 15.495 hybrid contribution 0.329 -2.049 -0.133 2.079 sum 6.064 9.333 8.680 14.114 Atomic orbital electron populations 1.20777 0.91101 1.01726 1.03059 1.19730 0.96201 0.92234 0.97658 1.20948 0.94171 0.97313 1.02648 1.20996 0.94315 0.97587 1.00959 1.20889 0.99264 0.92062 1.02809 1.19745 0.93269 0.95193 0.99434 1.21034 0.99427 0.94745 1.02673 1.19564 0.92539 0.94849 0.99802 1.21278 0.97967 0.93145 0.92391 1.63572 1.09394 1.42674 1.08367 1.23056 0.92361 0.97040 0.96691 1.23246 1.00322 0.93243 1.01488 1.19508 0.87947 0.88608 0.82693 1.86146 1.78841 1.55731 1.17930 1.21555 1.34402 0.96190 1.05340 0.92176 1.24990 0.94119 0.98914 0.94999 1.69746 1.39582 1.35617 1.08421 0.86499 0.79089 0.83551 0.78286 1.20435 1.21132 1.19860 1.23007 0.94201 0.91591 0.98070 0.90309 0.91401 0.92622 0.86558 0.86645 0.86636 0.90503 0.91959 0.91092 0.93763 0.90604 0.92179 0.93428 0.90605 0.92792 0.77493 0.92421 0.93670 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.60 36.00 0.35 -1.12 16 2 C -0.06 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.13 -1.72 9.70 -39.58 -0.38 -2.10 16 4 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 5 C -0.13 -1.69 9.70 -39.58 -0.38 -2.07 16 6 C -0.08 -1.07 5.81 -104.62 -0.61 -1.68 16 7 C -0.12 -1.55 8.20 36.00 0.30 -1.25 16 8 C -0.07 -1.03 5.11 -104.62 -0.54 -1.56 16 9 C 0.08 1.30 4.04 -4.98 -0.02 1.28 16 10 N -0.52 -10.00 5.10 -232.70 -1.19 -11.19 16 11 C 0.04 0.71 6.53 -2.83 -0.02 0.70 16 12 C -0.14 -3.32 5.37 -24.91 -0.13 -3.46 16 13 C 0.25 6.27 0.87 -89.63 -0.08 6.20 16 14 O -0.58 -15.29 13.16 -35.23 -0.46 -15.75 16 15 C -0.54 -14.35 8.27 -34.44 -0.28 -14.64 16 16 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 17 C 0.07 1.91 5.29 -17.82 -0.09 1.81 16 18 N -0.89 -23.90 10.75 55.43 0.60 -23.30 16 19 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.06 1.26 5.80 -2.30 -0.01 1.25 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.91 6.13 -51.93 -0.32 0.59 16 26 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.08 1.01 6.55 -51.93 -0.34 0.67 16 31 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.07 0.91 5.85 -51.93 -0.30 0.61 16 33 H 0.04 0.71 5.26 -51.93 -0.27 0.43 16 34 H 0.08 1.16 6.25 -51.93 -0.32 0.84 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.84 3.77 -51.93 -0.20 0.65 16 37 H 0.08 1.87 7.53 -51.93 -0.39 1.48 16 38 H 0.05 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.38 10.01 7.56 45.56 0.34 10.35 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 41 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -27.92 325.60 -9.63 -37.56 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.54 Total: 12.17 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -2.93 Total: -19.96 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.59 Total: -34.50 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.46 Total: -15.75 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.92 -9.63 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.432 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds