Wall clock time and date at job start Mon Mar 30 2020 02:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38233 * 119.99878 * 2 1 4 4 C 1.38235 * 119.99712 * 180.27849 * 3 2 1 5 5 C 1.38231 * 120.00163 * 359.46762 * 4 3 2 6 6 C 1.38241 * 120.00050 * 0.55160 * 5 4 3 7 7 C 1.50693 * 120.00297 * 179.72244 * 6 5 4 8 8 C 1.38237 * 119.99684 * 359.70468 * 6 5 4 9 9 C 1.50696 * 120.00150 * 179.97438 * 8 6 5 10 10 N 1.46897 * 109.47543 * 260.00574 * 9 8 6 11 11 C 1.47449 * 110.99910 * 76.68488 * 10 9 8 12 12 C 1.54314 * 107.23364 * 123.25975 * 11 10 9 13 13 C 1.55142 * 103.02003 * 22.28262 * 12 11 10 14 14 O 1.42904 * 110.98902 * 82.43627 * 13 12 11 15 15 C 1.50698 * 110.99460 * 206.21632 * 13 12 11 16 16 H 1.07997 * 119.99989 * 118.54395 * 15 13 12 17 17 C 1.37873 * 120.00110 * 298.55113 * 15 13 12 18 18 N 1.31517 * 119.99891 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00120 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47350 * 89.99590 * 19 17 15 21 21 H 1.48504 * 109.46908 * 209.99780 * 19 17 15 22 22 H 1.48500 * 109.46910 * 329.99188 * 19 17 15 23 23 C 1.47841 * 111.00404 * 197.52828 * 10 9 8 24 24 H 1.09001 * 109.47623 * 90.00144 * 1 2 3 25 25 H 1.09004 * 109.47478 * 210.00035 * 1 2 3 26 26 H 1.09005 * 109.47185 * 330.00220 * 1 2 3 27 27 H 1.07995 * 120.00226 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.99842 * 179.72037 * 4 3 2 29 29 H 1.07998 * 120.00548 * 180.27773 * 5 4 3 30 30 H 1.08999 * 109.47175 * 270.10408 * 7 6 5 31 31 H 1.09003 * 109.47296 * 30.10520 * 7 6 5 32 32 H 1.09001 * 109.47174 * 150.10320 * 7 6 5 33 33 H 1.09003 * 109.46705 * 20.00325 * 9 8 6 34 34 H 1.09000 * 109.47178 * 140.00293 * 9 8 6 35 35 H 1.09003 * 109.88609 * 242.66929 * 11 10 9 36 36 H 1.08995 * 109.88652 * 3.69041 * 11 10 9 37 37 H 1.08996 * 110.70729 * 140.66300 * 12 11 10 38 38 H 1.08999 * 110.71051 * 263.72867 * 12 11 10 39 39 H 0.96699 * 113.99633 * 61.46034 * 14 13 12 40 40 H 0.97002 * 119.99696 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.36983 * 332.46668 * 23 10 9 42 42 H 1.09000 * 110.37432 * 94.80224 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0058 5 6 4.2716 0.0000 -0.0005 6 6 3.5805 -1.1972 -0.0009 7 6 4.3340 -2.5023 -0.0015 8 6 2.1981 -1.1972 -0.0005 9 6 1.4446 -2.5022 -0.0015 10 7 0.9911 -2.8049 -1.3655 11 6 2.1039 -3.3050 -2.1936 12 6 1.6844 -4.6872 -2.7366 13 6 0.1360 -4.6412 -2.6508 14 8 -0.4194 -3.9662 -3.7813 15 6 -0.4388 -6.0278 -2.5176 16 1 -1.0101 -6.2936 -1.6404 17 6 -0.2354 -6.9573 -3.5154 18 7 0.4600 -6.6335 -4.5837 19 14 -0.9473 -8.6764 -3.3499 20 1 -2.3092 -8.7071 -3.9408 21 1 -0.0759 -9.6439 -4.0639 22 1 -1.0225 -9.0447 -1.9132 23 6 -0.0813 -3.8224 -1.3539 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 -0.0104 29 1 5.3516 0.0000 -0.0005 30 1 4.5172 -2.8156 -1.0292 31 1 5.2856 -2.3726 0.5140 32 1 3.7441 -3.2626 0.5105 33 1 2.0994 -3.3001 0.3491 34 1 0.5814 -2.4239 0.6594 35 1 2.2862 -2.6207 -3.0222 36 1 3.0042 -3.4000 -1.5865 37 1 2.0096 -4.8104 -3.7695 38 1 2.0841 -5.4849 -2.1104 39 1 -0.2252 -4.3915 -4.6278 40 1 0.6028 -7.2874 -5.2859 41 1 0.0149 -4.4651 -0.4788 42 1 -1.0599 -3.3426 -1.3675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:13 Heat of formation + Delta-G solvation = -42.345121 kcal Electronic energy + Delta-G solvation = -21997.755959 eV Core-core repulsion = 18941.445969 eV Total energy + Delta-G solvation = -3056.309991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01580 -39.60415 -36.58957 -34.46226 -34.18115 -33.61590 -31.02029 -29.87313 -28.55719 -27.48921 -26.86995 -25.46898 -22.37639 -21.52029 -21.39457 -20.93344 -19.00947 -17.30555 -17.07979 -16.88937 -16.60002 -16.21091 -15.72967 -15.47454 -14.77224 -14.69982 -14.29612 -14.12168 -13.88740 -13.73062 -13.58431 -13.44086 -13.31635 -13.10146 -13.00725 -12.84939 -12.64563 -12.49656 -12.27918 -12.22164 -12.05438 -11.76425 -11.58901 -11.48410 -11.08361 -10.60065 -10.07259 -9.46898 -9.35117 -9.05866 -8.21283 -6.37524 0.51302 0.55651 1.39924 1.42129 1.51092 2.37879 2.82002 3.03361 3.34759 3.82968 3.92612 4.00282 4.10277 4.11628 4.16694 4.25103 4.37833 4.42920 4.46322 4.59470 4.64584 4.72939 4.79083 4.81726 4.90085 4.93437 4.95607 5.04135 5.08548 5.11058 5.28405 5.35075 5.44830 5.48419 5.55025 5.65994 5.71745 5.80084 5.87425 6.00757 6.20912 6.26372 6.32935 6.68590 7.34257 7.45405 8.83877 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031612 B = 0.004584 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.531473 B = 6106.118845 C = 6438.936570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.137 4.137 6 C -0.089 4.089 7 C -0.122 4.122 8 C -0.090 4.090 9 C 0.083 3.917 10 N -0.518 5.518 11 C 0.047 3.953 12 C -0.134 4.134 13 C 0.236 3.764 14 O -0.589 6.589 15 C -0.562 4.562 16 H 0.055 0.945 17 C 0.032 3.968 18 N -0.911 5.911 19 Si 0.959 3.041 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.270 1.270 23 C 0.067 3.933 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.371 0.629 40 H 0.268 0.732 41 H 0.051 0.949 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 11.492 9.868 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.076 4.076 3 C -0.157 4.157 4 C -0.137 4.137 5 C -0.155 4.155 6 C -0.089 4.089 7 C -0.178 4.178 8 C -0.091 4.091 9 C -0.044 4.044 10 N -0.242 5.242 11 C -0.080 4.080 12 C -0.173 4.173 13 C 0.196 3.804 14 O -0.396 6.396 15 C -0.600 4.600 16 H 0.073 0.927 17 C -0.169 4.169 18 N -0.550 5.550 19 Si 0.784 3.216 20 H -0.203 1.203 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.060 4.060 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.155 0.845 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.219 0.781 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.735 12.289 9.980 17.204 hybrid contribution 0.048 -2.256 -0.485 2.308 sum 6.784 10.033 9.495 15.389 Atomic orbital electron populations 1.20734 0.90837 1.02590 1.02107 1.19954 0.96693 0.92736 0.98190 1.21254 0.94845 0.97557 1.02007 1.21396 0.94238 0.98711 0.99316 1.21223 1.00574 0.91705 1.01983 1.19977 0.93004 0.96397 0.99545 1.21023 1.00380 0.94019 1.02347 1.19561 0.93231 0.94400 1.01899 1.21288 0.98520 0.94182 0.90435 1.63506 1.08810 1.41418 1.10500 1.22922 0.93528 0.94700 0.96855 1.23043 0.99295 0.94854 1.00116 1.19769 0.88801 0.88616 0.83255 1.86139 1.79282 1.56005 1.18158 1.21829 1.35103 0.97525 1.05589 0.92705 1.25682 0.94314 1.02237 0.94675 1.69838 1.39863 1.36598 1.08731 0.85553 0.78290 0.79399 0.78334 1.20297 1.20573 1.19431 1.22841 0.94820 0.91737 0.96626 0.92077 0.92041 0.90324 0.84488 0.83757 0.84328 0.91280 0.89617 0.91680 0.93363 0.90003 0.93236 0.90969 0.92777 0.93655 0.78136 0.92263 0.93129 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.60 71.24 0.68 -2.05 16 2 C -0.08 -2.07 5.88 -19.87 -0.12 -2.19 16 3 C -0.14 -3.24 9.70 22.27 0.22 -3.02 16 4 C -0.12 -2.52 10.05 22.27 0.22 -2.29 16 5 C -0.14 -3.10 9.70 22.27 0.22 -2.88 16 6 C -0.09 -2.34 5.81 -19.87 -0.12 -2.45 16 7 C -0.12 -2.84 8.20 71.23 0.58 -2.26 16 8 C -0.09 -2.66 5.11 -19.87 -0.10 -2.77 16 9 C 0.08 2.64 4.04 85.56 0.35 2.99 16 10 N -0.52 -20.08 5.10 -890.12 -4.54 -24.62 16 11 C 0.05 1.89 6.53 86.64 0.57 2.46 16 12 C -0.13 -6.31 5.37 31.77 0.17 -6.14 16 13 C 0.24 11.92 0.87 -10.16 -0.01 11.91 16 14 O -0.59 -31.91 13.16 -148.98 -1.96 -33.87 16 15 C -0.56 -30.50 8.27 25.60 0.21 -30.29 16 16 H 0.05 2.95 7.79 -2.91 -0.02 2.93 16 17 C 0.03 1.68 5.29 84.65 0.45 2.13 16 18 N -0.91 -49.27 10.75 21.45 0.23 -49.04 16 19 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.07 2.94 5.80 86.77 0.50 3.44 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.62 6.13 -2.38 -0.01 1.60 16 26 H 0.08 1.59 8.09 -2.38 -0.02 1.57 16 27 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.07 1.71 6.55 -2.39 -0.02 1.70 16 31 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.06 1.58 5.85 -2.39 -0.01 1.57 16 33 H 0.05 1.50 5.26 -2.39 -0.01 1.49 16 34 H 0.08 2.48 6.25 -2.39 -0.01 2.46 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.51 3.77 -2.39 -0.01 2.50 16 37 H 0.05 2.75 7.53 -2.39 -0.02 2.73 16 38 H 0.04 2.16 8.04 -2.39 -0.02 2.14 16 39 H 0.37 20.39 7.56 -74.06 -0.56 19.83 16 40 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.05 2.12 7.70 -2.39 -0.02 2.11 16 42 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -59.46 325.60 0.05 -59.41 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.46 Total: 37.23 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 3.83 Total: -33.41 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -4.31 Total: -73.66 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.96 Total: -33.87 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -59.46 0.05 -59.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.067 kcal (2) G-P(sol) polarization free energy of solvation -59.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds