Wall clock time and date at job start Mon Mar 30 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38229 * 119.99979 * 2 1 4 4 C 1.38233 * 120.00011 * 180.24977 * 3 2 1 5 5 C 1.38237 * 120.00055 * 359.76726 * 4 3 2 6 6 C 1.38235 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00265 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99765 * 179.78750 * 2 1 3 9 9 C 1.50696 * 120.00300 * 359.97438 * 8 2 1 10 10 N 1.46898 * 109.47645 * 267.78387 * 9 8 2 11 11 C 1.47903 * 110.99760 * 63.95531 * 10 9 8 12 12 C 1.53999 * 107.22517 * 214.25759 * 11 10 9 13 13 C 1.54593 * 105.13792 * 1.12331 * 12 11 10 14 14 O 1.42901 * 110.72758 * 263.42530 * 13 12 11 15 15 C 1.50696 * 110.72465 * 140.31777 * 13 12 11 16 16 H 1.08005 * 120.00102 * 236.55637 * 15 13 12 17 17 C 1.37876 * 120.00215 * 56.55399 * 15 13 12 18 18 N 1.31516 * 119.99714 * 5.05959 * 17 15 13 19 19 Si 1.86795 * 120.00421 * 185.05942 * 17 15 13 20 20 H 1.48511 * 109.47119 * 94.99841 * 19 17 15 21 21 H 1.48494 * 109.47261 * 214.99576 * 19 17 15 22 22 H 1.48497 * 109.46985 * 335.00175 * 19 17 15 23 23 C 1.48809 * 111.18460 * 306.61893 * 10 9 8 24 24 H 1.09003 * 109.47160 * 276.75223 * 1 2 3 25 25 H 1.08995 * 109.46856 * 36.74748 * 1 2 3 26 26 H 1.08996 * 109.46968 * 156.75269 * 1 2 3 27 27 H 1.07997 * 120.00286 * 0.04017 * 3 2 1 28 28 H 1.08001 * 120.00381 * 179.79247 * 4 3 2 29 29 H 1.08003 * 120.00478 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47434 * 269.97399 * 7 6 5 31 31 H 1.09004 * 109.47294 * 29.97448 * 7 6 5 32 32 H 1.09004 * 109.47528 * 149.97748 * 7 6 5 33 33 H 1.09007 * 109.47064 * 147.78096 * 9 8 2 34 34 H 1.09007 * 109.47180 * 27.78882 * 9 8 2 35 35 H 1.09002 * 109.91930 * 94.80491 * 11 10 9 36 36 H 1.09001 * 109.91827 * 333.70517 * 11 10 9 37 37 H 1.08994 * 110.30912 * 120.03900 * 12 11 10 38 38 H 1.09006 * 110.30512 * 242.21300 * 12 11 10 39 39 H 0.96703 * 113.99555 * 298.54848 * 14 13 12 40 40 H 0.97000 * 120.00179 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.51865 * 41.06899 * 23 10 9 42 42 H 1.09003 * 110.69438 * 278.02058 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2717 0.0000 -0.0056 6 6 3.5806 -1.1972 -0.0012 7 6 4.3340 -2.5023 -0.0022 8 6 2.1982 -1.1972 0.0044 9 6 1.4447 -2.5022 0.0099 10 7 1.2468 -2.9477 1.3956 11 6 0.3944 -1.9966 2.1414 12 6 0.8987 -1.9764 3.5964 13 6 2.1010 -2.9479 3.6204 14 8 1.6971 -4.2413 4.0745 15 6 3.2092 -2.4036 4.4845 16 1 4.1969 -2.2628 4.0708 17 6 2.9623 -2.0854 5.8031 18 7 1.7885 -2.3490 6.3344 19 14 4.2948 -1.2797 6.8348 20 1 4.1135 0.1941 6.8144 21 1 4.2026 -1.7704 8.2333 22 1 5.6277 -1.6222 6.2769 23 6 2.5375 -2.9959 2.1346 24 1 -0.3633 0.1208 1.0206 25 1 -0.3633 0.8234 -0.6148 26 1 -0.3633 -0.9442 -0.4056 27 1 1.6583 2.1324 0.0007 28 1 4.1206 2.1324 -0.0086 29 1 5.3518 -0.0001 -0.0101 30 1 4.5114 -2.8187 -1.0301 31 1 5.2886 -2.3711 0.5074 32 1 3.7470 -3.2611 0.5153 33 1 2.0158 -3.2538 -0.5354 34 1 0.4755 -2.3642 -0.4694 35 1 -0.6439 -2.3271 2.1128 36 1 0.4792 -1.0012 1.7053 37 1 1.2187 -0.9716 3.8720 38 1 0.1175 -2.3244 4.2723 39 1 1.3437 -4.2495 4.9746 40 1 1.6146 -2.1248 7.2620 41 1 3.1525 -2.1309 1.8861 42 1 3.0700 -3.9224 1.9197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:17 Heat of formation + Delta-G solvation = -6.449301 kcal Electronic energy + Delta-G solvation = -22841.012372 eV Core-core repulsion = 19786.258941 eV Total energy + Delta-G solvation = -3054.753431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32330 -37.67737 -34.89067 -33.71765 -32.10504 -31.99913 -29.56851 -28.14029 -27.33799 -26.30880 -25.21484 -23.74686 -21.27389 -20.49725 -19.59424 -19.21871 -16.99014 -16.16617 -15.70842 -15.31896 -14.90026 -14.66595 -14.37829 -13.98502 -13.50490 -13.24773 -12.94178 -12.75831 -12.65956 -12.40028 -12.15245 -11.95065 -11.78613 -11.56473 -11.35181 -11.18228 -10.98155 -10.83857 -10.66461 -10.60051 -10.40648 -10.25463 -10.15489 -9.61634 -9.02434 -8.52780 -8.39706 -8.27228 -8.02681 -7.57907 -6.15888 -4.23053 1.59639 1.60367 3.23663 3.31312 3.35043 3.94202 4.33472 4.78900 4.96806 5.04520 5.12355 5.14189 5.20798 5.32164 5.47619 5.63516 5.69876 5.79227 5.82268 5.85829 5.87449 5.92072 6.05598 6.12592 6.16835 6.20949 6.32930 6.40949 6.45701 6.59851 6.69671 6.74468 6.77111 6.88436 6.98875 7.14625 7.27437 7.48325 7.58866 7.63105 7.77019 7.87794 8.26541 8.79615 9.44696 9.60498 10.91067 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.007186 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.920626 B = 3895.388315 C = 4332.594927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.063 4.063 7 C -0.139 4.139 8 C -0.113 4.113 9 C 0.075 3.925 10 N -0.501 5.501 11 C 0.010 3.990 12 C -0.124 4.124 13 C 0.255 3.745 14 O -0.582 6.582 15 C -0.534 4.534 16 H 0.059 0.941 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.041 3.959 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.375 0.625 40 H 0.265 0.735 41 H 0.066 0.934 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 5.023 -12.309 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.063 4.063 7 C -0.195 4.195 8 C -0.115 4.115 9 C -0.053 4.053 10 N -0.223 5.223 11 C -0.117 4.117 12 C -0.163 4.163 13 C 0.214 3.786 14 O -0.390 6.390 15 C -0.572 4.572 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.086 4.086 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.223 0.777 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.432 4.310 -12.776 13.490 hybrid contribution 0.941 1.723 1.329 2.371 sum 0.509 6.033 -11.447 12.950 Atomic orbital electron populations 1.21129 0.91639 1.02636 1.02581 1.19707 0.95752 0.92655 0.99312 1.20899 0.94263 0.97202 1.02413 1.21013 0.94274 0.97707 1.00466 1.20971 0.99497 0.92124 1.01955 1.19742 0.93148 0.95413 0.98036 1.21362 1.00685 0.95410 1.02036 1.20359 0.93704 0.96315 1.01119 1.21464 0.99017 0.91419 0.93383 1.65203 1.13031 1.44102 0.99967 1.23427 0.96900 0.95033 0.96389 1.22838 0.99936 1.01186 0.92356 1.19386 0.90132 0.80567 0.88468 1.86149 1.85264 1.31949 1.35604 1.21589 0.96891 1.42892 0.95858 0.92313 1.24979 0.95610 0.94831 0.97666 1.69783 1.21852 1.47421 1.14139 0.86541 0.82225 0.79521 0.79513 1.20680 1.21078 1.19757 1.23687 0.90414 1.00102 0.94357 0.90180 0.92050 0.90974 0.86586 0.86546 0.86451 0.91782 0.91505 0.89024 0.90325 0.90311 0.92333 0.92429 0.92449 0.91792 0.77656 0.92522 0.91583 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.31 36.01 0.30 -1.29 16 2 C -0.07 -1.11 5.01 -104.62 -0.52 -1.63 16 3 C -0.13 -1.85 9.73 -39.59 -0.39 -2.23 16 4 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 5 C -0.13 -1.89 9.70 -39.58 -0.38 -2.28 16 6 C -0.06 -0.99 4.48 -104.63 -0.47 -1.46 16 7 C -0.14 -2.01 8.30 36.00 0.30 -1.71 16 8 C -0.11 -1.82 4.09 -104.62 -0.43 -2.25 16 9 C 0.08 1.21 5.13 -4.98 -0.03 1.19 16 10 N -0.50 -9.87 5.54 -231.64 -1.28 -11.15 16 11 C 0.01 0.20 6.10 -2.75 -0.02 0.18 16 12 C -0.12 -2.97 5.11 -25.37 -0.13 -3.10 16 13 C 0.25 6.46 0.96 -89.91 -0.09 6.37 16 14 O -0.58 -15.62 13.10 -35.23 -0.46 -16.08 16 15 C -0.53 -14.58 8.17 -34.44 -0.28 -14.86 16 16 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 17 C 0.07 1.93 5.21 -17.82 -0.09 1.83 16 18 N -0.89 -24.26 11.03 55.43 0.61 -23.65 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.04 0.90 3.78 -1.74 -0.01 0.89 16 24 H 0.08 1.08 6.45 -51.93 -0.34 0.75 16 25 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.07 0.89 5.68 -51.93 -0.29 0.59 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.09 1.47 3.37 -51.93 -0.17 1.30 16 33 H 0.08 1.19 6.81 -51.92 -0.35 0.83 16 34 H 0.08 1.14 5.79 -51.93 -0.30 0.84 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.05 2.43 -51.93 -0.13 0.93 16 37 H 0.06 1.46 7.81 -51.93 -0.41 1.05 16 38 H 0.06 1.60 7.93 -51.93 -0.41 1.19 16 39 H 0.37 10.11 7.68 45.56 0.35 10.46 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.07 1.44 4.19 -51.93 -0.22 1.22 16 42 H 0.07 1.57 6.98 -51.93 -0.36 1.20 16 LS Contribution 312.55 15.07 4.71 4.71 Total: -1.00 -28.86 312.55 -9.21 -38.06 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -5.13 Total: 14.48 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -2.63 Total: -22.39 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.67 Total: -34.80 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.46 Total: -16.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.86 -9.21 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.614 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds