Wall clock time and date at job start Mon Mar 30 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38229 * 119.99979 * 2 1 4 4 C 1.38233 * 120.00011 * 180.24977 * 3 2 1 5 5 C 1.38237 * 120.00055 * 359.76726 * 4 3 2 6 6 C 1.38235 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00265 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99765 * 179.78750 * 2 1 3 9 9 C 1.50696 * 120.00300 * 359.97438 * 8 2 1 10 10 N 1.46898 * 109.47645 * 267.78387 * 9 8 2 11 11 C 1.47903 * 110.99760 * 63.95531 * 10 9 8 12 12 C 1.53999 * 107.22517 * 214.25759 * 11 10 9 13 13 C 1.54593 * 105.13792 * 1.12331 * 12 11 10 14 14 O 1.42901 * 110.72758 * 263.42530 * 13 12 11 15 15 C 1.50696 * 110.72465 * 140.31777 * 13 12 11 16 16 H 1.08005 * 120.00102 * 236.55637 * 15 13 12 17 17 C 1.37876 * 120.00215 * 56.55399 * 15 13 12 18 18 N 1.31516 * 119.99714 * 5.05959 * 17 15 13 19 19 Si 1.86795 * 120.00421 * 185.05942 * 17 15 13 20 20 H 1.48511 * 109.47119 * 94.99841 * 19 17 15 21 21 H 1.48494 * 109.47261 * 214.99576 * 19 17 15 22 22 H 1.48497 * 109.46985 * 335.00175 * 19 17 15 23 23 C 1.48809 * 111.18460 * 306.61893 * 10 9 8 24 24 H 1.09003 * 109.47160 * 276.75223 * 1 2 3 25 25 H 1.08995 * 109.46856 * 36.74748 * 1 2 3 26 26 H 1.08996 * 109.46968 * 156.75269 * 1 2 3 27 27 H 1.07997 * 120.00286 * 0.04017 * 3 2 1 28 28 H 1.08001 * 120.00381 * 179.79247 * 4 3 2 29 29 H 1.08003 * 120.00478 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47434 * 269.97399 * 7 6 5 31 31 H 1.09004 * 109.47294 * 29.97448 * 7 6 5 32 32 H 1.09004 * 109.47528 * 149.97748 * 7 6 5 33 33 H 1.09007 * 109.47064 * 147.78096 * 9 8 2 34 34 H 1.09007 * 109.47180 * 27.78882 * 9 8 2 35 35 H 1.09002 * 109.91930 * 94.80491 * 11 10 9 36 36 H 1.09001 * 109.91827 * 333.70517 * 11 10 9 37 37 H 1.08994 * 110.30912 * 120.03900 * 12 11 10 38 38 H 1.09006 * 110.30512 * 242.21300 * 12 11 10 39 39 H 0.96703 * 113.99555 * 298.54848 * 14 13 12 40 40 H 0.97000 * 120.00179 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.51865 * 41.06899 * 23 10 9 42 42 H 1.09003 * 110.69438 * 278.02058 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2717 0.0000 -0.0056 6 6 3.5806 -1.1972 -0.0012 7 6 4.3340 -2.5023 -0.0022 8 6 2.1982 -1.1972 0.0044 9 6 1.4447 -2.5022 0.0099 10 7 1.2468 -2.9477 1.3956 11 6 0.3944 -1.9966 2.1414 12 6 0.8987 -1.9764 3.5964 13 6 2.1010 -2.9479 3.6204 14 8 1.6971 -4.2413 4.0745 15 6 3.2092 -2.4036 4.4845 16 1 4.1969 -2.2628 4.0708 17 6 2.9623 -2.0854 5.8031 18 7 1.7885 -2.3490 6.3344 19 14 4.2948 -1.2797 6.8348 20 1 4.1135 0.1941 6.8144 21 1 4.2026 -1.7704 8.2333 22 1 5.6277 -1.6222 6.2769 23 6 2.5375 -2.9959 2.1346 24 1 -0.3633 0.1208 1.0206 25 1 -0.3633 0.8234 -0.6148 26 1 -0.3633 -0.9442 -0.4056 27 1 1.6583 2.1324 0.0007 28 1 4.1206 2.1324 -0.0086 29 1 5.3518 -0.0001 -0.0101 30 1 4.5114 -2.8187 -1.0301 31 1 5.2886 -2.3711 0.5074 32 1 3.7470 -3.2611 0.5153 33 1 2.0158 -3.2538 -0.5354 34 1 0.4755 -2.3642 -0.4694 35 1 -0.6439 -2.3271 2.1128 36 1 0.4792 -1.0012 1.7053 37 1 1.2187 -0.9716 3.8720 38 1 0.1175 -2.3244 4.2723 39 1 1.3437 -4.2495 4.9746 40 1 1.6146 -2.1248 7.2620 41 1 3.1525 -2.1309 1.8861 42 1 3.0700 -3.9224 1.9197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:16 Heat of formation + Delta-G solvation = -25.535428 kcal Electronic energy + Delta-G solvation = -22841.840009 eV Core-core repulsion = 19786.258941 eV Total energy + Delta-G solvation = -3055.581068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60812 -39.26336 -36.63020 -34.83512 -34.19761 -33.41959 -31.07446 -29.83807 -28.65637 -27.55927 -26.77659 -25.36495 -22.68275 -21.64641 -21.40768 -20.66359 -19.00004 -17.46055 -17.02450 -16.92966 -16.63560 -16.28796 -15.76224 -15.43240 -15.06122 -14.83030 -14.26076 -13.98321 -13.81822 -13.77684 -13.71020 -13.29920 -13.28010 -13.13376 -13.04061 -12.78180 -12.55050 -12.52133 -12.29556 -12.04146 -11.95384 -11.82056 -11.54460 -11.43367 -10.94581 -10.55553 -10.08505 -9.56104 -9.39997 -9.09860 -8.21274 -6.36196 0.46315 0.48639 1.36381 1.38755 1.48481 2.36823 2.81317 3.03274 3.31678 3.84648 3.91169 4.00592 4.02978 4.10139 4.12396 4.26472 4.40298 4.43929 4.48654 4.59639 4.69300 4.74968 4.79724 4.81620 4.85158 4.89187 4.94059 5.00932 5.10178 5.14325 5.30425 5.33601 5.39357 5.52928 5.57828 5.60477 5.66262 5.71755 5.81547 5.96990 6.18422 6.21714 6.32591 6.69706 7.34557 7.48800 8.84083 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.007186 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.920626 B = 3895.388315 C = 4332.594927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.142 4.142 6 C -0.081 4.081 7 C -0.135 4.135 8 C -0.133 4.133 9 C 0.077 3.923 10 N -0.509 5.509 11 C 0.017 3.983 12 C -0.114 4.114 13 C 0.235 3.765 14 O -0.591 6.591 15 C -0.558 4.558 16 H 0.049 0.951 17 C 0.032 3.968 18 N -0.909 5.909 19 Si 0.952 3.048 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.271 1.271 23 C 0.056 3.944 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.369 0.631 40 H 0.267 0.733 41 H 0.068 0.932 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 6.348 -13.450 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.086 4.086 3 C -0.157 4.157 4 C -0.138 4.138 5 C -0.160 4.160 6 C -0.081 4.081 7 C -0.191 4.191 8 C -0.135 4.135 9 C -0.050 4.050 10 N -0.231 5.231 11 C -0.110 4.110 12 C -0.153 4.153 13 C 0.196 3.804 14 O -0.398 6.398 15 C -0.596 4.596 16 H 0.068 0.932 17 C -0.169 4.169 18 N -0.548 5.548 19 Si 0.778 3.222 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.196 1.196 23 C -0.071 4.071 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.217 0.783 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.277 5.634 -13.934 15.032 hybrid contribution 0.903 1.336 1.656 2.311 sum 0.626 6.970 -12.278 14.132 Atomic orbital electron populations 1.21131 0.90204 1.03971 1.02544 1.20042 0.97007 0.92658 0.98924 1.21259 0.94650 0.97938 1.01839 1.21388 0.94601 0.98505 0.99296 1.21260 1.00497 0.92211 1.02049 1.19993 0.93489 0.96212 0.98439 1.21302 1.00172 0.94548 1.03121 1.20413 0.93976 0.96525 1.02566 1.21519 1.00408 0.91975 0.91105 1.65141 1.11687 1.44736 1.01491 1.23381 0.97276 0.96490 0.93833 1.22615 0.98817 0.99199 0.94713 1.19683 0.90364 0.80113 0.90264 1.86144 1.85310 1.33168 1.35197 1.21824 0.97126 1.43845 0.96838 0.93248 1.25652 0.97576 0.95130 0.98579 1.69867 1.23013 1.47511 1.14400 0.85635 0.79788 0.78684 0.78093 1.20178 1.20465 1.19612 1.23460 0.91406 0.99828 0.92369 0.90970 0.89612 0.90535 0.84330 0.84098 0.85009 0.89659 0.91463 0.90862 0.89502 0.88373 0.91161 0.90446 0.94744 0.93827 0.78329 0.92330 0.91421 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.31 71.24 0.59 -2.22 16 2 C -0.09 -2.40 5.01 -19.87 -0.10 -2.50 16 3 C -0.14 -3.61 9.73 22.27 0.22 -3.40 16 4 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 5 C -0.14 -3.99 9.70 22.27 0.22 -3.77 16 6 C -0.08 -2.46 4.48 -19.87 -0.09 -2.55 16 7 C -0.14 -3.81 8.30 71.23 0.59 -3.22 16 8 C -0.13 -4.09 4.09 -19.87 -0.08 -4.17 16 9 C 0.08 2.36 5.13 85.56 0.44 2.80 16 10 N -0.51 -19.63 5.54 -886.77 -4.92 -24.55 16 11 C 0.02 0.68 6.10 86.45 0.53 1.21 16 12 C -0.11 -5.55 5.11 31.47 0.16 -5.39 16 13 C 0.24 12.16 0.96 -10.34 -0.01 12.15 16 14 O -0.59 -32.45 13.10 -148.98 -1.95 -34.40 16 15 C -0.56 -30.98 8.17 25.60 0.21 -30.77 16 16 H 0.05 2.76 7.79 -2.91 -0.02 2.73 16 17 C 0.03 1.71 5.21 84.65 0.44 2.15 16 18 N -0.91 -50.01 11.03 21.45 0.24 -49.77 16 19 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.06 2.49 3.78 86.60 0.33 2.81 16 24 H 0.07 1.79 6.45 -2.39 -0.02 1.77 16 25 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 26 H 0.08 1.67 5.68 -2.39 -0.01 1.66 16 27 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 28 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.84 8.09 -2.38 -0.02 1.82 16 32 H 0.07 2.33 3.37 -2.39 -0.01 2.33 16 33 H 0.09 2.49 6.81 -2.38 -0.02 2.48 16 34 H 0.10 2.60 5.79 -2.38 -0.01 2.59 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.08 2.73 2.43 -2.39 -0.01 2.72 16 37 H 0.03 1.77 7.81 -2.39 -0.02 1.75 16 38 H 0.04 2.23 7.93 -2.38 -0.02 2.21 16 39 H 0.37 20.54 7.68 -74.06 -0.57 19.97 16 40 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.07 2.96 4.19 -2.39 -0.01 2.95 16 42 H 0.06 2.85 6.98 -2.39 -0.02 2.83 16 Total: -1.00 -61.52 312.55 -0.47 -61.99 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: 0.47 Total: 41.26 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 3.66 Total: -39.74 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -4.68 Total: -74.32 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.95 Total: -34.40 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -61.52 -0.47 -61.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.452 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds