Wall clock time and date at job start Mon Mar 30 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 119.99819 * 2 1 4 4 C 1.38222 * 120.00065 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99710 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00121 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99809 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46918 * 200.00126 * 7 6 5 9 9 C 1.52999 * 109.47074 * 79.99980 * 7 6 5 10 10 N 1.46897 * 109.46942 * 319.99794 * 7 6 5 11 11 C 1.48536 * 111.00092 * 307.39866 * 10 7 6 12 12 C 1.54937 * 103.22467 * 200.28004 * 11 10 7 13 13 C 1.54587 * 102.92315 * 37.41285 * 12 11 10 14 14 O 1.42900 * 110.39124 * 219.08078 * 13 12 11 15 15 C 1.50706 * 110.30686 * 96.96058 * 13 12 11 16 16 H 1.08000 * 119.99302 * 244.28330 * 15 13 12 17 17 C 1.37871 * 120.00436 * 64.00863 * 15 13 12 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47050 * 59.99579 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46492 * 299.99554 * 19 17 15 23 23 C 1.47902 * 111.00151 * 190.00331 * 10 7 6 24 24 C 1.38207 * 120.00346 * 180.27824 * 2 1 3 25 25 H 1.08994 * 109.47083 * 89.99923 * 1 2 3 26 26 H 1.08998 * 109.46738 * 210.00267 * 1 2 3 27 27 H 1.09004 * 109.47002 * 329.99802 * 1 2 3 28 28 H 1.08003 * 119.99893 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.99549 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.99588 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47036 * 299.99654 * 9 7 6 32 32 H 1.08996 * 109.47383 * 59.99823 * 9 7 6 33 33 H 1.09007 * 109.46609 * 180.02562 * 9 7 6 34 34 H 1.08994 * 110.66820 * 318.71625 * 11 10 7 35 35 H 1.09002 * 110.66622 * 81.84854 * 11 10 7 36 36 H 1.09000 * 110.72364 * 279.05256 * 12 11 10 37 37 H 1.09004 * 110.72172 * 155.77960 * 12 11 10 38 38 H 0.96698 * 114.00219 * 297.15333 * 14 13 12 39 39 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.91485 * 26.49045 * 23 10 7 41 41 H 1.09003 * 109.91359 * 265.20014 * 23 10 7 42 42 H 1.08003 * 120.00288 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5807 -1.1968 -0.0016 7 6 4.3343 -2.5020 -0.0034 8 1 3.6793 -3.2992 -0.3546 9 6 4.8079 -2.8193 1.4165 10 7 5.4968 -2.3949 -0.8949 11 6 5.0928 -1.9143 -2.2411 12 6 6.2705 -2.3589 -3.1444 13 6 6.6595 -3.7335 -2.5536 14 8 8.0797 -3.8915 -2.5534 15 6 6.0107 -4.8433 -3.3401 16 1 5.2820 -5.4853 -2.8676 17 6 6.3433 -5.0355 -4.6642 18 7 7.2263 -4.2500 -5.2411 19 14 5.5386 -6.4107 -5.6393 20 1 4.0682 -6.2045 -5.6650 21 1 6.0631 -6.4050 -7.0286 22 1 5.8445 -7.7155 -4.9996 23 6 6.1233 -3.7172 -1.1102 24 6 2.1981 -1.1969 -0.0058 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 -0.0010 30 1 5.3517 0.0002 -0.0024 31 1 5.4630 -2.0220 1.7677 32 1 3.9453 -2.8987 2.0780 33 1 5.3533 -3.7631 1.4150 34 1 4.1646 -2.3904 -2.5570 35 1 4.9914 -0.8290 -2.2477 36 1 7.1012 -1.6573 -3.0683 37 1 5.9450 -2.4620 -4.1796 38 1 8.4760 -3.8876 -3.4355 39 1 7.4601 -4.3849 -6.1729 40 1 5.3813 -4.5051 -0.9807 41 1 6.9446 -3.8578 -0.4074 42 1 1.6582 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:33 Heat of formation + Delta-G solvation = -28.874683 kcal Electronic energy + Delta-G solvation = -21850.649816 eV Core-core repulsion = 18794.923947 eV Total energy + Delta-G solvation = -3055.725869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.72984 -38.08425 -35.38417 -32.86287 -32.11618 -32.05853 -29.84222 -27.92724 -27.51989 -26.72772 -24.85189 -22.92359 -21.88462 -20.82929 -19.46798 -19.03799 -17.07865 -16.33647 -15.80860 -15.20057 -14.94585 -14.63546 -14.16616 -13.81942 -13.62553 -13.35568 -13.13676 -12.93278 -12.57554 -12.49943 -12.23280 -12.03734 -11.79786 -11.59992 -11.45608 -11.16957 -11.06513 -10.95031 -10.78216 -10.55713 -10.41745 -10.28534 -10.18227 -9.96440 -9.13189 -8.64731 -8.57681 -8.39408 -8.06153 -7.70162 -6.20263 -4.29775 1.52237 1.55438 3.22872 3.28024 3.30705 3.90521 4.29140 4.56425 4.85174 4.93502 5.04302 5.08461 5.29846 5.33430 5.53615 5.56384 5.60958 5.69549 5.75074 5.79035 5.81295 5.98400 6.01545 6.12812 6.16029 6.24868 6.28328 6.31497 6.44222 6.51178 6.65368 6.69289 6.77597 6.86165 7.02951 7.11471 7.18943 7.40906 7.53489 7.59571 7.76748 7.83447 8.22709 8.72911 9.39182 9.59237 10.85606 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.004893 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.501165 B = 5720.783393 C = 6105.553392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.063 4.063 7 C 0.108 3.892 8 H 0.047 0.953 9 C -0.134 4.134 10 N -0.509 5.509 11 C 0.043 3.957 12 C -0.127 4.127 13 C 0.247 3.753 14 O -0.590 6.590 15 C -0.535 4.535 16 H 0.057 0.943 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.055 3.945 24 C -0.118 4.118 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 8.266 9.252 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.115 4.115 6 C -0.064 4.064 7 C -0.001 4.001 8 H 0.065 0.935 9 C -0.192 4.192 10 N -0.234 5.234 11 C -0.084 4.084 12 C -0.166 4.166 13 C 0.206 3.794 14 O -0.399 6.399 15 C -0.573 4.573 16 H 0.076 0.924 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.072 4.072 24 C -0.136 4.136 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.076 8.616 9.982 16.008 hybrid contribution -1.006 -1.267 -1.688 2.338 sum -10.082 7.350 8.294 14.982 Atomic orbital electron populations 1.20753 0.91587 1.02340 1.02121 1.19794 0.95711 0.93159 1.00653 1.20946 0.94349 0.97117 1.02262 1.21138 0.94156 0.98037 1.00717 1.21106 1.00763 0.91311 0.98305 1.19853 0.93028 0.95161 0.98332 1.20752 0.91554 0.92879 0.94918 0.93501 1.21756 1.00816 1.02135 0.94479 1.64845 1.23447 1.24728 1.10414 1.23105 0.98096 0.98718 0.88511 1.23018 0.95707 0.98257 0.99631 1.19344 0.79602 0.91447 0.88962 1.86101 1.22184 1.96345 1.35262 1.21722 1.24214 1.15496 0.95857 0.92447 1.24994 0.94763 0.95997 0.97426 1.69623 1.32690 1.37950 1.13240 0.86560 0.79592 0.82426 0.78878 1.20253 1.21064 1.20062 1.22786 0.97638 0.88066 0.98750 1.20898 0.93607 0.97436 1.01706 0.91405 0.91788 0.91874 0.86691 0.86382 0.85099 0.91906 0.92860 0.92169 0.94464 0.91798 0.93360 0.90203 0.76762 0.92202 0.93896 0.91252 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.09 -1.16 5.88 -104.63 -0.62 -1.77 16 3 C -0.13 -1.55 9.70 -39.58 -0.38 -1.94 16 4 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 5 C -0.10 -1.42 7.87 -39.58 -0.31 -1.73 16 6 C -0.06 -0.96 4.00 -104.62 -0.42 -1.38 16 7 C 0.11 1.78 2.07 -68.86 -0.14 1.64 16 8 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 9 C -0.13 -1.93 9.23 37.16 0.34 -1.59 16 10 N -0.51 -9.88 4.48 -223.89 -1.00 -10.88 16 11 C 0.04 0.89 5.45 -1.90 -0.01 0.87 16 12 C -0.13 -3.02 5.90 -24.87 -0.15 -3.17 16 13 C 0.25 6.22 0.99 -90.42 -0.09 6.13 16 14 O -0.59 -15.78 12.93 -35.23 -0.46 -16.24 16 15 C -0.53 -14.41 8.21 -34.44 -0.28 -14.69 16 16 H 0.06 1.54 7.34 -52.49 -0.39 1.16 16 17 C 0.07 1.86 5.02 -17.82 -0.09 1.77 16 18 N -0.90 -24.01 10.41 55.43 0.58 -23.43 16 19 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.05 1.21 5.27 -2.76 -0.01 1.20 16 24 C -0.12 -1.63 9.33 -39.59 -0.37 -2.00 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 2.01 7.72 -52.49 -0.41 1.61 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.88 7.52 -51.93 -0.39 0.49 16 34 H 0.04 0.79 8.02 -51.93 -0.42 0.38 16 35 H 0.06 1.22 6.80 -51.93 -0.35 0.87 16 36 H 0.05 1.15 8.09 -51.93 -0.42 0.73 16 37 H 0.08 2.06 6.75 -51.93 -0.35 1.71 16 38 H 0.38 10.32 7.10 45.56 0.32 10.65 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.04 0.94 6.81 -51.93 -0.35 0.59 16 41 H 0.07 1.54 7.96 -51.93 -0.41 1.13 16 42 H 0.12 1.48 8.04 -52.48 -0.42 1.06 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -27.64 332.48 -9.53 -37.17 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.07 Total: 11.97 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.57 Total: -19.32 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: -0.43 Total: -34.31 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.46 Total: -16.24 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.64 -9.53 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.297 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds