Wall clock time and date at job start Mon Mar 30 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 119.99819 * 2 1 4 4 C 1.38222 * 120.00065 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99710 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00121 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99809 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46918 * 200.00126 * 7 6 5 9 9 C 1.52999 * 109.47074 * 79.99980 * 7 6 5 10 10 N 1.46897 * 109.46942 * 319.99794 * 7 6 5 11 11 C 1.48536 * 111.00092 * 307.39866 * 10 7 6 12 12 C 1.54937 * 103.22467 * 200.28004 * 11 10 7 13 13 C 1.54587 * 102.92315 * 37.41285 * 12 11 10 14 14 O 1.42900 * 110.39124 * 219.08078 * 13 12 11 15 15 C 1.50706 * 110.30686 * 96.96058 * 13 12 11 16 16 H 1.08000 * 119.99302 * 244.28330 * 15 13 12 17 17 C 1.37871 * 120.00436 * 64.00863 * 15 13 12 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47050 * 59.99579 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46492 * 299.99554 * 19 17 15 23 23 C 1.47902 * 111.00151 * 190.00331 * 10 7 6 24 24 C 1.38207 * 120.00346 * 180.27824 * 2 1 3 25 25 H 1.08994 * 109.47083 * 89.99923 * 1 2 3 26 26 H 1.08998 * 109.46738 * 210.00267 * 1 2 3 27 27 H 1.09004 * 109.47002 * 329.99802 * 1 2 3 28 28 H 1.08003 * 119.99893 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.99549 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.99588 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47036 * 299.99654 * 9 7 6 32 32 H 1.08996 * 109.47383 * 59.99823 * 9 7 6 33 33 H 1.09007 * 109.46609 * 180.02562 * 9 7 6 34 34 H 1.08994 * 110.66820 * 318.71625 * 11 10 7 35 35 H 1.09002 * 110.66622 * 81.84854 * 11 10 7 36 36 H 1.09000 * 110.72364 * 279.05256 * 12 11 10 37 37 H 1.09004 * 110.72172 * 155.77960 * 12 11 10 38 38 H 0.96698 * 114.00219 * 297.15333 * 14 13 12 39 39 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.91485 * 26.49045 * 23 10 7 41 41 H 1.09003 * 109.91359 * 265.20014 * 23 10 7 42 42 H 1.08003 * 120.00288 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5807 -1.1968 -0.0016 7 6 4.3343 -2.5020 -0.0034 8 1 3.6793 -3.2992 -0.3546 9 6 4.8079 -2.8193 1.4165 10 7 5.4968 -2.3949 -0.8949 11 6 5.0928 -1.9143 -2.2411 12 6 6.2705 -2.3589 -3.1444 13 6 6.6595 -3.7335 -2.5536 14 8 8.0797 -3.8915 -2.5534 15 6 6.0107 -4.8433 -3.3401 16 1 5.2820 -5.4853 -2.8676 17 6 6.3433 -5.0355 -4.6642 18 7 7.2263 -4.2500 -5.2411 19 14 5.5386 -6.4107 -5.6393 20 1 4.0682 -6.2045 -5.6650 21 1 6.0631 -6.4050 -7.0286 22 1 5.8445 -7.7155 -4.9996 23 6 6.1233 -3.7172 -1.1102 24 6 2.1981 -1.1969 -0.0058 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 -0.0010 30 1 5.3517 0.0002 -0.0024 31 1 5.4630 -2.0220 1.7677 32 1 3.9453 -2.8987 2.0780 33 1 5.3533 -3.7631 1.4150 34 1 4.1646 -2.3904 -2.5570 35 1 4.9914 -0.8290 -2.2477 36 1 7.1012 -1.6573 -3.0683 37 1 5.9450 -2.4620 -4.1796 38 1 8.4760 -3.8876 -3.4355 39 1 7.4601 -4.3849 -6.1729 40 1 5.3813 -4.5051 -0.9807 41 1 6.9446 -3.8578 -0.4074 42 1 1.6582 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:32 Heat of formation + Delta-G solvation = -45.236478 kcal Electronic energy + Delta-G solvation = -21851.359317 eV Core-core repulsion = 18794.923947 eV Total energy + Delta-G solvation = -3056.435369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98900 -39.59958 -37.07905 -34.29185 -34.17067 -33.14583 -31.10467 -29.75290 -29.06517 -27.66476 -26.69855 -24.23583 -22.92321 -22.42674 -21.21550 -20.47515 -19.06932 -17.46905 -17.31723 -16.98729 -16.34630 -16.14938 -15.49874 -15.19532 -15.00883 -14.68109 -14.49401 -14.33481 -14.16884 -13.82391 -13.53905 -13.25261 -13.07484 -12.99494 -12.93258 -12.83844 -12.63880 -12.46457 -12.31125 -12.25228 -12.03199 -11.88420 -11.75456 -11.48754 -11.10760 -10.62296 -10.13307 -9.66711 -9.39124 -9.32952 -8.23447 -6.40866 0.49160 0.54510 1.38735 1.39867 1.47583 2.35609 2.85152 2.99460 3.11419 3.66843 3.99529 4.04188 4.09565 4.10685 4.20232 4.31630 4.35706 4.47676 4.49446 4.56757 4.67462 4.71044 4.76045 4.86129 4.86720 4.94711 4.97809 5.03774 5.13425 5.19199 5.23007 5.30495 5.36046 5.41262 5.55347 5.61507 5.71951 5.75098 5.77350 5.84269 6.18615 6.24154 6.25864 6.65523 7.30897 7.46779 8.81049 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.004893 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.501165 B = 5720.783393 C = 6105.553392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.079 4.079 7 C 0.107 3.893 8 H 0.038 0.962 9 C -0.128 4.128 10 N -0.504 5.504 11 C 0.059 3.941 12 C -0.120 4.120 13 C 0.230 3.770 14 O -0.599 6.599 15 C -0.559 4.559 16 H 0.050 0.950 17 C 0.031 3.969 18 N -0.910 5.910 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.274 1.274 23 C 0.065 3.935 24 C -0.131 4.131 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.376 0.624 39 H 0.271 0.729 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.352 9.185 9.819 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.132 4.132 6 C -0.079 4.079 7 C -0.001 4.001 8 H 0.056 0.944 9 C -0.186 4.186 10 N -0.229 5.229 11 C -0.068 4.068 12 C -0.159 4.159 13 C 0.190 3.810 14 O -0.408 6.408 15 C -0.597 4.597 16 H 0.069 0.931 17 C -0.170 4.170 18 N -0.550 5.550 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.199 1.199 23 C -0.063 4.063 24 C -0.149 4.149 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.995 9.543 10.565 17.988 hybrid contribution -0.429 -1.501 -1.847 2.419 sum -11.423 8.042 8.718 16.467 Atomic orbital electron populations 1.20808 0.89404 1.03640 1.02828 1.20170 0.97383 0.92677 0.99229 1.21319 0.94180 0.98231 1.00930 1.21399 0.94820 0.98115 0.99786 1.21080 1.00282 0.92069 0.99796 1.19753 0.93626 0.94380 1.00129 1.20822 0.90371 0.93842 0.95083 0.94442 1.21717 1.01611 1.01695 0.93541 1.64840 1.25098 1.22916 1.10015 1.22914 0.96065 0.99469 0.88393 1.22832 0.96644 0.97579 0.98857 1.19628 0.78743 0.91784 0.90839 1.86094 1.23312 1.96488 1.34910 1.21928 1.24787 1.16308 0.96697 0.93133 1.25679 0.95192 0.97982 0.98148 1.69707 1.33077 1.38765 1.13478 0.85617 0.78757 0.79624 0.77666 1.19871 1.20323 1.19913 1.22602 0.97522 0.89456 0.96740 1.21056 0.93159 0.98556 1.02155 0.90858 0.91128 0.90047 0.83913 0.84354 0.86386 0.91885 0.90707 0.92794 0.95452 0.90179 0.94007 0.92616 0.77385 0.91989 0.94224 0.91608 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.09 -2.10 5.88 -19.87 -0.12 -2.21 16 3 C -0.13 -2.71 9.70 22.27 0.22 -2.50 16 4 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 5 C -0.11 -3.22 7.87 22.27 0.18 -3.05 16 6 C -0.08 -2.31 4.00 -19.86 -0.08 -2.39 16 7 C 0.11 3.50 2.07 44.17 0.09 3.59 16 8 H 0.04 1.30 7.67 -2.39 -0.02 1.28 16 9 C -0.13 -3.58 9.23 71.98 0.66 -2.92 16 10 N -0.50 -19.63 4.48 -862.25 -3.86 -23.49 16 11 C 0.06 2.44 5.45 86.65 0.47 2.92 16 12 C -0.12 -5.84 5.90 31.80 0.19 -5.65 16 13 C 0.23 11.86 0.99 -10.66 -0.01 11.85 16 14 O -0.60 -32.88 12.93 -148.98 -1.93 -34.81 16 15 C -0.56 -30.66 8.21 25.60 0.21 -30.45 16 16 H 0.05 2.77 7.34 -2.91 -0.02 2.75 16 17 C 0.03 1.63 5.02 84.65 0.42 2.06 16 18 N -0.91 -49.43 10.41 21.45 0.22 -49.20 16 19 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.06 2.90 5.27 86.44 0.46 3.36 16 24 C -0.13 -3.42 9.33 22.27 0.21 -3.21 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 28 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 29 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 30 H 0.12 3.59 7.72 -2.91 -0.02 3.56 16 31 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.55 7.52 -2.38 -0.02 1.53 16 34 H 0.03 1.18 8.02 -2.39 -0.02 1.16 16 35 H 0.08 3.04 6.80 -2.39 -0.02 3.03 16 36 H 0.04 2.03 8.09 -2.39 -0.02 2.01 16 37 H 0.06 2.94 6.75 -2.38 -0.02 2.93 16 38 H 0.38 20.98 7.10 -74.06 -0.53 20.45 16 39 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.04 1.78 6.81 -2.39 -0.02 1.76 16 41 H 0.07 2.97 7.96 -2.39 -0.02 2.95 16 42 H 0.12 2.95 8.04 -2.91 -0.02 2.93 16 Total: -1.00 -59.00 332.48 0.77 -58.23 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.47 Total: 36.97 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.84 Total: -32.29 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -3.64 Total: -72.69 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.93 Total: -34.81 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -59.00 0.77 -58.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.997 kcal (2) G-P(sol) polarization free energy of solvation -59.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds