Wall clock time and date at job start Mon Mar 30 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.00200 * 2 1 4 4 C 1.38209 * 119.99669 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.00603 * 359.85378 * 4 3 2 6 6 C 1.38217 * 119.99840 * 0.40419 * 5 4 3 7 7 C 1.50699 * 120.00150 * 179.80712 * 6 5 4 8 8 H 1.09004 * 109.47630 * 165.79863 * 7 6 5 9 9 C 1.53002 * 109.47230 * 285.79776 * 7 6 5 10 10 N 1.46897 * 109.47552 * 45.79506 * 7 6 5 11 11 C 1.47836 * 111.00762 * 184.07122 * 10 7 6 12 12 C 1.54906 * 104.79816 * 213.63859 * 11 10 7 13 13 C 1.55138 * 101.65262 * 37.07002 * 12 11 10 14 14 O 1.42898 * 110.70518 * 82.73062 * 13 12 11 15 15 C 1.50702 * 110.85325 * 205.89173 * 13 12 11 16 16 H 1.08002 * 119.99958 * 113.68420 * 15 13 12 17 17 C 1.37871 * 120.00108 * 293.68609 * 15 13 12 18 18 N 1.31517 * 120.00257 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00070 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46725 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47053 * 119.99860 * 19 17 15 22 22 H 1.48498 * 109.47429 * 240.00059 * 19 17 15 23 23 C 1.47446 * 110.99733 * 63.22576 * 10 7 6 24 24 C 1.38221 * 119.99860 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47270 * 269.97446 * 1 2 3 26 26 H 1.09001 * 109.46987 * 29.97409 * 1 2 3 27 27 H 1.09002 * 109.47021 * 149.97701 * 1 2 3 28 28 H 1.08002 * 119.99777 * 0.02562 * 3 2 1 29 29 H 1.08008 * 119.99520 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.00329 * 180.20960 * 5 4 3 31 31 H 1.08997 * 109.47465 * 65.80753 * 9 7 6 32 32 H 1.08997 * 109.47236 * 185.81517 * 9 7 6 33 33 H 1.09005 * 109.46846 * 305.81182 * 9 7 6 34 34 H 1.09004 * 110.37056 * 332.46910 * 11 10 7 35 35 H 1.09000 * 110.37556 * 94.80520 * 11 10 7 36 36 H 1.09000 * 110.98961 * 278.96983 * 12 11 10 37 37 H 1.09000 * 110.98616 * 155.16148 * 12 11 10 38 38 H 0.96702 * 114.00267 * 66.40443 * 14 13 12 39 39 H 0.97004 * 119.99779 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.89156 * 242.66993 * 23 10 7 41 41 H 1.08999 * 109.88883 * 3.85515 * 23 10 7 42 42 H 1.07997 * 119.99937 * 359.97267 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0000 0.0041 6 6 3.5806 -1.1970 -0.0013 7 6 4.3341 -2.5021 -0.0017 8 1 3.6521 -3.3156 0.2460 9 6 4.9342 -2.7441 -1.3882 10 7 5.4116 -2.4459 0.9950 11 6 6.2344 -3.6735 0.9559 12 6 6.6680 -3.9062 2.4247 13 6 5.3979 -3.4671 3.1997 14 8 4.4424 -4.5286 3.2465 15 6 5.7503 -3.0083 4.5912 16 1 5.6141 -1.9737 4.8694 17 6 6.2467 -3.9094 5.5092 18 7 6.4131 -5.1692 5.1703 19 14 6.6842 -3.3405 7.2338 20 1 6.4069 -1.8871 7.3609 21 1 5.8678 -4.0881 8.2237 22 1 8.1252 -3.5941 7.4881 23 6 4.8652 -2.2902 2.3556 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3517 0.0000 0.0080 31 1 5.6920 -1.9879 -1.5932 32 1 5.3904 -3.7335 -1.4190 33 1 4.1474 -2.6832 -2.1403 34 1 5.6426 -4.5156 0.5969 35 1 7.1081 -3.5247 0.3213 36 1 7.5205 -3.2785 2.6842 37 1 6.8907 -4.9581 2.6040 38 1 4.7287 -5.2930 3.7650 39 1 6.7619 -5.8032 5.8163 40 1 5.1998 -1.3454 2.7838 41 1 3.7761 -2.3201 2.3234 42 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:36 Heat of formation + Delta-G solvation = -30.786181 kcal Electronic energy + Delta-G solvation = -21901.057088 eV Core-core repulsion = 18845.248330 eV Total energy + Delta-G solvation = -3055.808758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.64280 -38.12041 -35.30474 -32.86358 -32.05149 -31.91327 -29.66789 -28.39499 -27.54565 -26.68329 -24.33830 -23.32384 -21.81172 -20.57792 -19.57924 -18.91675 -17.10907 -16.29813 -15.66665 -15.18728 -14.86605 -14.63376 -14.24785 -13.99709 -13.65778 -13.43947 -13.05853 -12.82564 -12.49785 -12.22262 -12.15984 -11.88504 -11.71545 -11.62467 -11.57143 -11.23171 -11.09133 -10.88113 -10.67029 -10.60131 -10.41530 -10.33130 -10.24244 -9.87767 -9.23263 -8.59881 -8.56002 -8.31722 -8.06401 -7.61178 -6.19756 -4.26301 1.60340 1.63745 3.22580 3.31182 3.36107 3.98219 4.32063 4.60427 4.93352 5.00718 5.07959 5.12664 5.36220 5.40402 5.56830 5.61774 5.63582 5.73315 5.76327 5.80277 5.88219 5.95356 6.03825 6.15722 6.19937 6.28962 6.31730 6.35735 6.40215 6.51495 6.61895 6.73501 6.76887 6.94473 7.00834 7.11148 7.26730 7.44900 7.51087 7.71072 7.82150 7.87185 8.17932 8.75564 9.41756 9.54928 10.87547 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.005102 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.024158 B = 5486.366666 C = 6047.309353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.061 4.061 7 C 0.113 3.887 8 H 0.048 0.952 9 C -0.138 4.138 10 N -0.522 5.522 11 C 0.043 3.957 12 C -0.131 4.131 13 C 0.236 3.764 14 O -0.593 6.593 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.063 3.937 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.383 0.617 39 H 0.266 0.734 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 7.136 -11.382 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.061 4.061 7 C 0.004 3.996 8 H 0.066 0.934 9 C -0.196 4.196 10 N -0.246 5.246 11 C -0.084 4.084 12 C -0.170 4.170 13 C 0.195 3.805 14 O -0.403 6.403 15 C -0.567 4.567 16 H 0.080 0.920 17 C -0.132 4.132 18 N -0.541 5.541 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.064 4.064 24 C -0.135 4.135 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.714 7.809 -11.818 15.274 hybrid contribution 0.147 -0.871 1.615 1.840 sum -5.567 6.938 -10.203 13.536 Atomic orbital electron populations 1.20753 0.91616 1.02249 1.02177 1.19797 0.95710 0.93164 1.00656 1.20930 0.94353 0.97082 1.02328 1.21118 0.94163 0.98005 1.00831 1.21027 1.00539 0.91298 0.98304 1.19822 0.92952 0.95149 0.98208 1.20704 0.92413 0.93066 0.93413 0.93434 1.21833 1.00756 1.01936 0.95028 1.63753 1.19506 1.36702 1.04685 1.23029 0.96027 0.90057 0.99294 1.23162 1.00353 1.01755 0.91736 1.19730 0.84288 0.83812 0.92627 1.86075 1.46913 1.31067 1.76245 1.21660 1.42521 0.95925 0.96608 0.91975 1.25002 0.94312 0.94875 0.99028 1.69604 1.46461 1.02606 1.35431 0.86418 0.78000 0.79030 0.83843 1.19646 1.20893 1.20874 1.22770 0.97630 0.99180 0.86850 1.20927 0.93691 0.97430 1.01463 0.91351 0.91930 0.91812 0.86739 0.86468 0.85373 0.91849 0.92411 0.92747 0.94492 0.92050 0.91863 0.90978 0.76557 0.92392 0.90570 0.93588 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.09 -1.24 5.88 -104.62 -0.62 -1.86 16 3 C -0.13 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 5 C -0.09 -1.42 9.24 -39.59 -0.37 -1.78 16 6 C -0.06 -0.97 3.81 -104.62 -0.40 -1.37 16 7 C 0.11 1.90 1.83 -68.87 -0.13 1.78 16 8 H 0.05 0.88 7.94 -51.93 -0.41 0.47 16 9 C -0.14 -1.94 8.80 37.16 0.33 -1.61 16 10 N -0.52 -10.07 4.50 -224.68 -1.01 -11.08 16 11 C 0.04 0.85 5.44 -2.30 -0.01 0.84 16 12 C -0.13 -3.05 5.67 -24.59 -0.14 -3.19 16 13 C 0.24 5.93 0.85 -89.95 -0.08 5.85 16 14 O -0.59 -15.72 13.08 -35.23 -0.46 -16.18 16 15 C -0.53 -14.38 8.22 -34.44 -0.28 -14.66 16 16 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 17 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 18 N -0.90 -24.23 10.69 55.43 0.59 -23.64 16 19 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.06 1.41 5.64 -2.84 -0.02 1.40 16 24 C -0.12 -1.74 9.32 -39.58 -0.37 -2.11 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 30 H 0.13 1.96 7.90 -52.48 -0.41 1.54 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.79 7.06 -51.93 -0.37 0.43 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.73 7.41 -51.93 -0.38 0.34 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.51 8.05 -51.93 -0.42 1.09 16 37 H 0.07 1.77 7.76 -51.93 -0.40 1.36 16 38 H 0.38 10.34 6.98 45.56 0.32 10.66 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.08 1.75 7.63 -51.93 -0.40 1.35 16 41 H 0.05 1.07 7.10 -51.93 -0.37 0.70 16 42 H 0.12 1.64 7.99 -52.49 -0.42 1.22 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -27.80 335.41 -9.61 -37.40 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.17 Total: 12.41 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.59 Total: -19.84 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.42 Total: -34.72 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.46 Total: -16.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.80 -9.61 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.618 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds