Wall clock time and date at job start Mon Mar 30 2020 02:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.00200 * 2 1 4 4 C 1.38209 * 119.99669 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.00603 * 359.85378 * 4 3 2 6 6 C 1.38217 * 119.99840 * 0.40419 * 5 4 3 7 7 C 1.50699 * 120.00150 * 179.80712 * 6 5 4 8 8 H 1.09004 * 109.47630 * 165.79863 * 7 6 5 9 9 C 1.53002 * 109.47230 * 285.79776 * 7 6 5 10 10 N 1.46897 * 109.47552 * 45.79506 * 7 6 5 11 11 C 1.47836 * 111.00762 * 184.07122 * 10 7 6 12 12 C 1.54906 * 104.79816 * 213.63859 * 11 10 7 13 13 C 1.55138 * 101.65262 * 37.07002 * 12 11 10 14 14 O 1.42898 * 110.70518 * 82.73062 * 13 12 11 15 15 C 1.50702 * 110.85325 * 205.89173 * 13 12 11 16 16 H 1.08002 * 119.99958 * 113.68420 * 15 13 12 17 17 C 1.37871 * 120.00108 * 293.68609 * 15 13 12 18 18 N 1.31517 * 120.00257 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00070 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46725 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47053 * 119.99860 * 19 17 15 22 22 H 1.48498 * 109.47429 * 240.00059 * 19 17 15 23 23 C 1.47446 * 110.99733 * 63.22576 * 10 7 6 24 24 C 1.38221 * 119.99860 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47270 * 269.97446 * 1 2 3 26 26 H 1.09001 * 109.46987 * 29.97409 * 1 2 3 27 27 H 1.09002 * 109.47021 * 149.97701 * 1 2 3 28 28 H 1.08002 * 119.99777 * 0.02562 * 3 2 1 29 29 H 1.08008 * 119.99520 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.00329 * 180.20960 * 5 4 3 31 31 H 1.08997 * 109.47465 * 65.80753 * 9 7 6 32 32 H 1.08997 * 109.47236 * 185.81517 * 9 7 6 33 33 H 1.09005 * 109.46846 * 305.81182 * 9 7 6 34 34 H 1.09004 * 110.37056 * 332.46910 * 11 10 7 35 35 H 1.09000 * 110.37556 * 94.80520 * 11 10 7 36 36 H 1.09000 * 110.98961 * 278.96983 * 12 11 10 37 37 H 1.09000 * 110.98616 * 155.16148 * 12 11 10 38 38 H 0.96702 * 114.00267 * 66.40443 * 14 13 12 39 39 H 0.97004 * 119.99779 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.89156 * 242.66993 * 23 10 7 41 41 H 1.08999 * 109.88883 * 3.85515 * 23 10 7 42 42 H 1.07997 * 119.99937 * 359.97267 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0000 0.0041 6 6 3.5806 -1.1970 -0.0013 7 6 4.3341 -2.5021 -0.0017 8 1 3.6521 -3.3156 0.2460 9 6 4.9342 -2.7441 -1.3882 10 7 5.4116 -2.4459 0.9950 11 6 6.2344 -3.6735 0.9559 12 6 6.6680 -3.9062 2.4247 13 6 5.3979 -3.4671 3.1997 14 8 4.4424 -4.5286 3.2465 15 6 5.7503 -3.0083 4.5912 16 1 5.6141 -1.9737 4.8694 17 6 6.2467 -3.9094 5.5092 18 7 6.4131 -5.1692 5.1703 19 14 6.6842 -3.3405 7.2338 20 1 6.4069 -1.8871 7.3609 21 1 5.8678 -4.0881 8.2237 22 1 8.1252 -3.5941 7.4881 23 6 4.8652 -2.2902 2.3556 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3517 0.0000 0.0080 31 1 5.6920 -1.9879 -1.5932 32 1 5.3904 -3.7335 -1.4190 33 1 4.1474 -2.6832 -2.1403 34 1 5.6426 -4.5156 0.5969 35 1 7.1081 -3.5247 0.3213 36 1 7.5205 -3.2785 2.6842 37 1 6.8907 -4.9581 2.6040 38 1 4.7287 -5.2930 3.7650 39 1 6.7619 -5.8032 5.8163 40 1 5.1998 -1.3454 2.7838 41 1 3.7761 -2.3201 2.3234 42 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:35 Heat of formation + Delta-G solvation = -47.283958 kcal Electronic energy + Delta-G solvation = -21901.772485 eV Core-core repulsion = 18845.248330 eV Total energy + Delta-G solvation = -3056.524155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95569 -39.63089 -37.01189 -34.28571 -34.13493 -33.05105 -30.98713 -30.08220 -29.25794 -27.63941 -26.26029 -24.60835 -22.88942 -22.08402 -21.44157 -20.32395 -19.15686 -17.41286 -17.15253 -16.95318 -16.48086 -16.07922 -15.82335 -15.58043 -14.82275 -14.63738 -14.45596 -14.06245 -13.87794 -13.78620 -13.74369 -13.26529 -13.06681 -12.99693 -12.92564 -12.78275 -12.66480 -12.50650 -12.37134 -12.26106 -12.02738 -11.83823 -11.75573 -11.50756 -11.17606 -10.64576 -10.10355 -9.65318 -9.39252 -9.24085 -8.23930 -6.38676 0.50864 0.55874 1.37752 1.40897 1.51958 2.37235 2.85988 3.00088 3.14036 3.73731 3.88677 4.02067 4.10619 4.21041 4.28910 4.32805 4.37706 4.40832 4.52514 4.56752 4.64780 4.69280 4.74830 4.83147 4.84767 4.94371 4.97836 5.03380 5.11746 5.20647 5.25176 5.31209 5.36913 5.47315 5.53673 5.64408 5.73114 5.78426 5.79647 5.97191 6.18744 6.21391 6.30368 6.65529 7.32285 7.42577 8.81829 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.005102 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.024158 B = 5486.366666 C = 6047.309353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.078 4.078 7 C 0.113 3.887 8 H 0.027 0.973 9 C -0.130 4.130 10 N -0.514 5.514 11 C 0.053 3.947 12 C -0.124 4.124 13 C 0.220 3.780 14 O -0.601 6.601 15 C -0.557 4.557 16 H 0.052 0.948 17 C 0.030 3.970 18 N -0.915 5.915 19 Si 0.960 3.040 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.276 1.276 23 C 0.078 3.922 24 C -0.136 4.136 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.377 0.623 39 H 0.270 0.730 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 8.531 -12.099 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.128 4.128 6 C -0.078 4.078 7 C 0.004 3.996 8 H 0.045 0.955 9 C -0.187 4.187 10 N -0.238 5.238 11 C -0.074 4.074 12 C -0.163 4.163 13 C 0.180 3.820 14 O -0.410 6.410 15 C -0.595 4.595 16 H 0.070 0.930 17 C -0.170 4.170 18 N -0.556 5.556 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.201 1.201 23 C -0.050 4.050 24 C -0.154 4.154 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.092 9.204 -12.554 16.716 hybrid contribution 0.215 -1.290 1.833 2.251 sum -5.876 7.914 -10.721 14.564 Atomic orbital electron populations 1.20806 0.89497 1.03643 1.02717 1.20176 0.97387 0.92739 0.99400 1.21313 0.94324 0.98091 1.01075 1.21423 0.94761 0.98265 0.99745 1.21069 1.00403 0.91851 0.99450 1.19799 0.93450 0.94825 0.99764 1.20766 0.91500 0.93298 0.94002 0.95540 1.21780 1.01302 1.02203 0.93457 1.63788 1.20240 1.36289 1.03517 1.22976 0.96957 0.90253 0.97213 1.22966 0.99112 1.00217 0.94008 1.19982 0.85074 0.84206 0.92752 1.86070 1.47672 1.31198 1.76092 1.21890 1.43697 0.95763 0.98172 0.92972 1.25684 0.93989 0.94982 1.02347 1.69678 1.46213 1.03188 1.36479 0.85476 0.77946 0.78452 0.79541 1.19668 1.20435 1.20116 1.22503 0.96587 0.97623 0.88271 1.21073 0.93549 0.98341 1.02442 0.91100 0.89821 0.91232 0.83872 0.84145 0.85957 0.91282 0.92102 0.91087 0.94540 0.89336 0.92909 0.92732 0.77225 0.92056 0.91485 0.94964 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 10.01 71.24 0.71 -1.31 16 2 C -0.10 -2.42 5.88 -19.86 -0.12 -2.54 16 3 C -0.13 -3.02 9.70 22.27 0.22 -2.80 16 4 C -0.12 -3.09 10.05 22.26 0.22 -2.87 16 5 C -0.11 -3.23 9.24 22.27 0.21 -3.03 16 6 C -0.08 -2.46 3.81 -19.87 -0.08 -2.54 16 7 C 0.11 3.79 1.83 44.17 0.08 3.87 16 8 H 0.03 1.00 7.94 -2.38 -0.02 0.98 16 9 C -0.13 -3.47 8.80 71.98 0.63 -2.84 16 10 N -0.51 -19.82 4.50 -864.76 -3.89 -23.72 16 11 C 0.05 2.07 5.44 86.77 0.47 2.54 16 12 C -0.12 -5.86 5.67 31.98 0.18 -5.68 16 13 C 0.22 11.32 0.85 -10.36 -0.01 11.32 16 14 O -0.60 -32.74 13.08 -148.98 -1.95 -34.69 16 15 C -0.56 -30.91 8.22 25.60 0.21 -30.70 16 16 H 0.05 2.92 7.53 -2.91 -0.02 2.89 16 17 C 0.03 1.61 5.28 84.65 0.45 2.06 16 18 N -0.92 -49.72 10.69 21.45 0.23 -49.49 16 19 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.08 3.58 5.64 86.65 0.49 4.07 16 24 C -0.14 -3.99 9.32 22.27 0.21 -3.78 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 27 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 28 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.12 3.67 7.90 -2.91 -0.02 3.65 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.57 7.06 -2.39 -0.02 1.55 16 33 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.04 1.42 7.41 -2.39 -0.02 1.41 16 35 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.05 2.55 8.05 -2.39 -0.02 2.53 16 37 H 0.05 2.73 7.76 -2.39 -0.02 2.71 16 38 H 0.38 21.00 6.98 -74.06 -0.52 20.49 16 39 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 40 H 0.07 3.16 7.63 -2.39 -0.02 3.14 16 41 H 0.03 1.54 7.10 -2.39 -0.02 1.52 16 42 H 0.12 3.29 7.99 -2.91 -0.02 3.26 16 Total: -1.00 -59.68 335.41 0.77 -58.91 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 0.48 Total: 38.25 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 3.88 Total: -34.23 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -3.67 Total: -73.21 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.95 Total: -34.69 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -59.68 0.77 -58.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.627 kcal (2) G-P(sol) polarization free energy of solvation -59.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds