Wall clock time and date at job start Mon Mar 30 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.50707 * 119.99817 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46846 * 199.99576 * 7 6 5 9 9 C 1.53005 * 109.47243 * 79.99514 * 7 6 5 10 10 N 1.46897 * 109.47026 * 319.99438 * 7 6 5 11 11 C 1.47840 * 111.00281 * 300.84562 * 10 7 6 12 12 C 1.54908 * 104.79532 * 213.63712 * 11 10 7 13 13 C 1.55135 * 101.65423 * 37.06589 * 12 11 10 14 14 O 1.42906 * 110.70166 * 82.72982 * 13 12 11 15 15 C 1.50697 * 110.70598 * 205.96397 * 13 12 11 16 16 H 1.07995 * 120.00298 * 113.60660 * 15 13 12 17 17 C 1.37880 * 119.99825 * 293.60075 * 15 13 12 18 18 N 1.31516 * 120.00203 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99834 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47286 * 59.99961 * 19 17 15 21 21 H 1.48503 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47030 * 299.99853 * 19 17 15 23 23 C 1.47446 * 111.00053 * 180.02562 * 10 7 6 24 24 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47228 * 180.02562 * 9 7 6 32 32 H 1.08995 * 109.46827 * 300.00521 * 9 7 6 33 33 H 1.09003 * 109.46765 * 59.99699 * 9 7 6 34 34 H 1.09003 * 110.37159 * 332.46525 * 11 10 7 35 35 H 1.09003 * 110.37664 * 94.80366 * 11 10 7 36 36 H 1.09007 * 110.98707 * 278.97450 * 12 11 10 37 37 H 1.09006 * 111.02428 * 155.17672 * 12 11 10 38 38 H 0.96702 * 113.99860 * 66.40638 * 14 13 12 39 39 H 0.96997 * 119.99605 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88895 * 242.66948 * 23 10 7 41 41 H 1.09000 * 109.88794 * 3.85128 * 23 10 7 42 42 H 1.07998 * 120.00075 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3342 -2.5021 0.0014 8 1 3.6795 -3.2997 -0.3499 9 6 4.8060 -2.8180 1.4222 10 7 5.4979 -2.3959 -0.8888 11 6 5.0811 -2.0708 -2.2694 12 6 6.1041 -2.8019 -3.1741 13 6 6.3370 -4.1169 -2.3846 14 8 5.3086 -5.0669 -2.6710 15 6 7.6957 -4.6906 -2.6941 16 1 8.4520 -4.7332 -1.9244 17 6 7.9731 -5.1615 -3.9600 18 7 7.0519 -5.1103 -4.8972 19 14 9.6571 -5.8734 -4.3435 20 1 9.9133 -7.0409 -3.4623 21 1 9.7001 -6.3054 -5.7636 22 1 10.6966 -4.8391 -4.1095 23 6 6.2607 -3.6575 -0.9140 24 6 2.1981 -1.1970 0.0058 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 5.3514 -3.7617 1.4225 32 1 5.4605 -2.0203 1.7734 33 1 3.9424 -2.8967 2.0826 34 1 4.0738 -2.4417 -2.4590 35 1 5.1277 -0.9946 -2.4365 36 1 7.0278 -2.2295 -3.2606 37 1 5.6805 -3.0065 -4.1574 38 1 5.3124 -5.3877 -3.5832 39 1 7.2473 -5.4412 -5.7878 40 1 7.2653 -3.4913 -0.5251 41 1 5.7494 -4.4119 -0.3160 42 1 1.6581 -2.1323 0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:42 Heat of formation + Delta-G solvation = -29.712369 kcal Electronic energy + Delta-G solvation = -21800.194880 eV Core-core repulsion = 18744.432687 eV Total energy + Delta-G solvation = -3055.762194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69636 -38.14214 -35.29824 -32.83425 -32.06188 -32.02239 -29.85974 -28.20805 -27.40950 -26.74543 -24.83155 -22.90811 -21.85452 -20.70647 -19.57800 -18.89633 -17.13561 -16.39417 -15.71280 -15.32939 -14.88008 -14.49006 -14.07533 -13.97743 -13.77955 -13.40864 -13.16030 -12.92988 -12.66633 -12.22752 -12.12578 -11.94327 -11.79128 -11.59809 -11.33858 -11.24707 -11.18486 -10.86785 -10.80714 -10.52168 -10.46505 -10.42105 -10.14653 -9.87915 -9.23460 -8.62871 -8.59436 -8.37858 -8.06114 -7.61592 -6.19917 -4.27023 1.54461 1.57106 3.25181 3.29851 3.32905 3.92565 4.31355 4.57953 4.89650 4.95240 5.06178 5.08420 5.32071 5.35096 5.54291 5.60718 5.62396 5.71184 5.74227 5.76985 5.82351 5.97466 6.10123 6.15881 6.19914 6.23219 6.27908 6.36051 6.47324 6.51457 6.58023 6.70733 6.71524 6.89757 6.98050 7.12064 7.21004 7.44993 7.50853 7.70803 7.81657 7.86762 8.16234 8.74175 9.40928 9.54072 10.87296 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033339 B = 0.004243 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.651611 B = 6597.630545 C = 6683.225288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.096 4.096 6 C -0.061 4.061 7 C 0.113 3.887 8 H 0.048 0.952 9 C -0.139 4.139 10 N -0.522 5.522 11 C 0.046 3.954 12 C -0.131 4.131 13 C 0.237 3.763 14 O -0.593 6.593 15 C -0.532 4.532 16 H 0.062 0.938 17 C 0.070 3.930 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.058 3.942 24 C -0.119 4.119 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.383 0.617 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 9.400 8.527 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.114 4.114 6 C -0.061 4.061 7 C 0.004 3.996 8 H 0.066 0.934 9 C -0.196 4.196 10 N -0.246 5.246 11 C -0.081 4.081 12 C -0.170 4.170 13 C 0.196 3.804 14 O -0.403 6.403 15 C -0.570 4.570 16 H 0.080 0.920 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.069 4.069 24 C -0.137 4.137 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.904 9.847 9.174 16.137 hybrid contribution 0.532 -1.073 -1.320 1.782 sum -8.372 8.774 7.854 14.448 Atomic orbital electron populations 1.20753 0.91600 1.02332 1.02098 1.19799 0.95707 0.93172 1.00708 1.20933 0.94353 0.97083 1.02393 1.21140 0.94157 0.98037 1.00798 1.21092 1.00743 0.91258 0.98292 1.19876 0.92963 0.95244 0.98060 1.20701 0.91704 0.92744 0.94471 0.93407 1.21856 1.00929 1.02196 0.94626 1.63743 1.19565 1.32865 1.08444 1.22991 0.97907 0.99064 0.88175 1.23166 0.97104 0.98126 0.98585 1.19697 0.86516 0.85440 0.88731 1.86072 1.55438 1.62623 1.36176 1.21585 0.98073 1.40910 0.96463 0.92009 1.25006 0.97464 0.94816 0.95894 1.69585 1.33857 1.47090 1.03484 0.86520 0.83904 0.79551 0.77231 1.20114 1.21201 1.20091 1.22843 0.97562 0.88342 0.98175 1.20914 0.93686 0.97413 1.01710 0.91427 0.91894 0.91782 0.86739 0.86445 0.85126 0.91900 0.91958 0.92823 0.94704 0.92204 0.91902 0.91057 0.76522 0.92256 0.90303 0.93261 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.18 5.88 -104.62 -0.62 -1.79 16 3 C -0.13 -1.57 9.70 -39.58 -0.38 -1.95 16 4 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 5 C -0.10 -1.40 8.65 -39.58 -0.34 -1.75 16 6 C -0.06 -0.94 4.10 -104.62 -0.43 -1.37 16 7 C 0.11 1.90 1.86 -68.86 -0.13 1.77 16 8 H 0.05 0.88 7.97 -51.93 -0.41 0.47 16 9 C -0.14 -2.04 9.04 37.16 0.34 -1.70 16 10 N -0.52 -10.04 4.34 -224.71 -0.98 -11.01 16 11 C 0.05 0.94 5.62 -2.30 -0.01 0.92 16 12 C -0.13 -3.08 5.66 -24.59 -0.14 -3.22 16 13 C 0.24 5.90 0.86 -89.98 -0.08 5.82 16 14 O -0.59 -15.62 13.09 -35.23 -0.46 -16.08 16 15 C -0.53 -14.30 8.21 -34.44 -0.28 -14.58 16 16 H 0.06 1.64 7.53 -52.49 -0.40 1.25 16 17 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 18 N -0.90 -24.19 10.69 55.43 0.59 -23.60 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.06 1.26 5.49 -2.86 -0.02 1.24 16 24 C -0.12 -1.67 9.32 -39.58 -0.37 -2.04 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.98 7.72 -52.49 -0.41 1.57 16 31 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.73 7.77 -51.93 -0.40 0.33 16 35 H 0.06 1.15 7.74 -51.93 -0.40 0.75 16 36 H 0.06 1.51 8.04 -51.93 -0.42 1.10 16 37 H 0.07 1.78 7.76 -51.93 -0.40 1.37 16 38 H 0.38 10.33 6.99 45.56 0.32 10.65 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 40 H 0.08 1.71 7.63 -51.93 -0.40 1.31 16 41 H 0.05 1.06 6.28 -51.93 -0.33 0.74 16 42 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -27.46 333.69 -9.52 -36.98 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.09 Total: 12.53 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.59 Total: -19.55 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.38 Total: -34.61 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.46 Total: -16.08 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.46 -9.52 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.263 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds