Wall clock time and date at job start Mon Mar 30 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.50707 * 119.99817 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46846 * 199.99576 * 7 6 5 9 9 C 1.53005 * 109.47243 * 79.99514 * 7 6 5 10 10 N 1.46897 * 109.47026 * 319.99438 * 7 6 5 11 11 C 1.47840 * 111.00281 * 300.84562 * 10 7 6 12 12 C 1.54908 * 104.79532 * 213.63712 * 11 10 7 13 13 C 1.55135 * 101.65423 * 37.06589 * 12 11 10 14 14 O 1.42906 * 110.70166 * 82.72982 * 13 12 11 15 15 C 1.50697 * 110.70598 * 205.96397 * 13 12 11 16 16 H 1.07995 * 120.00298 * 113.60660 * 15 13 12 17 17 C 1.37880 * 119.99825 * 293.60075 * 15 13 12 18 18 N 1.31516 * 120.00203 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99834 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47286 * 59.99961 * 19 17 15 21 21 H 1.48503 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47030 * 299.99853 * 19 17 15 23 23 C 1.47446 * 111.00053 * 180.02562 * 10 7 6 24 24 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47228 * 180.02562 * 9 7 6 32 32 H 1.08995 * 109.46827 * 300.00521 * 9 7 6 33 33 H 1.09003 * 109.46765 * 59.99699 * 9 7 6 34 34 H 1.09003 * 110.37159 * 332.46525 * 11 10 7 35 35 H 1.09003 * 110.37664 * 94.80366 * 11 10 7 36 36 H 1.09007 * 110.98707 * 278.97450 * 12 11 10 37 37 H 1.09006 * 111.02428 * 155.17672 * 12 11 10 38 38 H 0.96702 * 113.99860 * 66.40638 * 14 13 12 39 39 H 0.96997 * 119.99605 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88895 * 242.66948 * 23 10 7 41 41 H 1.09000 * 109.88794 * 3.85128 * 23 10 7 42 42 H 1.07998 * 120.00075 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3342 -2.5021 0.0014 8 1 3.6795 -3.2997 -0.3499 9 6 4.8060 -2.8180 1.4222 10 7 5.4979 -2.3959 -0.8888 11 6 5.0811 -2.0708 -2.2694 12 6 6.1041 -2.8019 -3.1741 13 6 6.3370 -4.1169 -2.3846 14 8 5.3086 -5.0669 -2.6710 15 6 7.6957 -4.6906 -2.6941 16 1 8.4520 -4.7332 -1.9244 17 6 7.9731 -5.1615 -3.9600 18 7 7.0519 -5.1103 -4.8972 19 14 9.6571 -5.8734 -4.3435 20 1 9.9133 -7.0409 -3.4623 21 1 9.7001 -6.3054 -5.7636 22 1 10.6966 -4.8391 -4.1095 23 6 6.2607 -3.6575 -0.9140 24 6 2.1981 -1.1970 0.0058 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 5.3514 -3.7617 1.4225 32 1 5.4605 -2.0203 1.7734 33 1 3.9424 -2.8967 2.0826 34 1 4.0738 -2.4417 -2.4590 35 1 5.1277 -0.9946 -2.4365 36 1 7.0278 -2.2295 -3.2606 37 1 5.6805 -3.0065 -4.1574 38 1 5.3124 -5.3877 -3.5832 39 1 7.2473 -5.4412 -5.7878 40 1 7.2653 -3.4913 -0.5251 41 1 5.7494 -4.4119 -0.3160 42 1 1.6581 -2.1323 0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:42 Heat of formation + Delta-G solvation = -45.767810 kcal Electronic energy + Delta-G solvation = -21800.891097 eV Core-core repulsion = 18744.432687 eV Total energy + Delta-G solvation = -3056.458410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97859 -39.63608 -36.98800 -34.25751 -34.12486 -33.11692 -31.13573 -30.03917 -28.95540 -27.66874 -26.66115 -24.25780 -22.88658 -22.29655 -21.31525 -20.34464 -19.15380 -17.54266 -17.15704 -16.93622 -16.54328 -15.96953 -15.59518 -15.47087 -15.08944 -14.56323 -14.48344 -14.23428 -13.91930 -13.80277 -13.53305 -13.29888 -13.04057 -13.00098 -12.96170 -12.78389 -12.60898 -12.57823 -12.31356 -12.28879 -12.03061 -11.84822 -11.77151 -11.49104 -11.15206 -10.62955 -10.11090 -9.65696 -9.38668 -9.25154 -8.22487 -6.37646 0.50431 0.55374 1.42075 1.42458 1.50537 2.38347 2.86247 3.01661 3.11027 3.72651 3.88759 4.02269 4.10579 4.17138 4.30593 4.35176 4.36753 4.44427 4.49876 4.57257 4.59514 4.69281 4.75213 4.80983 4.85941 4.93000 5.01994 5.04263 5.10309 5.19701 5.24382 5.29999 5.37281 5.47262 5.52525 5.64553 5.73276 5.78401 5.79981 5.96615 6.17812 6.21762 6.29475 6.66928 7.33195 7.42470 8.82928 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033339 B = 0.004243 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.651611 B = 6597.630545 C = 6683.225288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.077 4.077 7 C 0.113 3.887 8 H 0.028 0.972 9 C -0.132 4.132 10 N -0.513 5.513 11 C 0.062 3.938 12 C -0.124 4.124 13 C 0.221 3.779 14 O -0.600 6.600 15 C -0.558 4.558 16 H 0.058 0.942 17 C 0.028 3.972 18 N -0.917 5.917 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.271 1.271 23 C 0.067 3.933 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.377 0.623 39 H 0.269 0.731 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 10.876 9.315 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.130 4.130 6 C -0.077 4.077 7 C 0.005 3.995 8 H 0.046 0.954 9 C -0.190 4.190 10 N -0.237 5.237 11 C -0.066 4.066 12 C -0.163 4.163 13 C 0.181 3.819 14 O -0.410 6.410 15 C -0.597 4.597 16 H 0.076 0.924 17 C -0.171 4.171 18 N -0.557 5.557 19 Si 0.787 3.213 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.061 4.061 24 C -0.152 4.152 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.531 11.331 9.977 17.854 hybrid contribution 0.659 -1.498 -1.561 2.262 sum -8.873 9.833 8.416 15.692 Atomic orbital electron populations 1.20809 0.89432 1.03600 1.02826 1.20172 0.97385 0.92686 0.99337 1.21312 0.94244 0.98133 1.00979 1.21418 0.94775 0.98174 0.99735 1.21086 1.00410 0.91873 0.99588 1.19753 0.93495 0.94475 0.99976 1.20742 0.90522 0.93480 0.94802 0.95420 1.21808 1.01697 1.01835 0.93621 1.63772 1.20720 1.31189 1.08047 1.22816 0.96229 0.99427 0.88116 1.22980 0.97326 0.97910 0.98052 1.19960 0.85652 0.85529 0.90802 1.86068 1.56053 1.63199 1.35678 1.21874 0.98959 1.41947 0.96894 0.92383 1.25717 1.00796 0.94966 0.95668 1.69676 1.35226 1.47146 1.03650 0.85560 0.79876 0.78797 0.77078 1.19896 1.20662 1.19606 1.22694 0.98041 0.89290 0.96066 1.21052 0.93326 0.98448 1.02401 0.90842 0.89976 0.91266 0.83876 0.84211 0.86086 0.92690 0.91462 0.90904 0.95648 0.90634 0.92902 0.93095 0.77264 0.92113 0.90344 0.93472 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.10 -2.17 5.88 -19.87 -0.12 -2.29 16 3 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 4 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 5 C -0.11 -3.13 8.65 22.27 0.19 -2.94 16 6 C -0.08 -2.30 4.10 -19.87 -0.08 -2.38 16 7 C 0.11 3.81 1.86 44.17 0.08 3.89 16 8 H 0.03 1.05 7.97 -2.39 -0.02 1.03 16 9 C -0.13 -3.81 9.04 71.98 0.65 -3.16 16 10 N -0.51 -19.83 4.34 -864.84 -3.75 -23.58 16 11 C 0.06 2.53 5.62 86.77 0.49 3.02 16 12 C -0.12 -5.95 5.66 31.98 0.18 -5.77 16 13 C 0.22 11.25 0.86 -10.38 -0.01 11.24 16 14 O -0.60 -32.51 13.09 -148.98 -1.95 -34.46 16 15 C -0.56 -30.48 8.21 25.60 0.21 -30.27 16 16 H 0.06 3.12 7.53 -2.91 -0.02 3.10 16 17 C 0.03 1.52 5.28 84.66 0.45 1.97 16 18 N -0.92 -49.93 10.69 21.45 0.23 -49.70 16 19 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.07 2.94 5.49 86.63 0.48 3.42 16 24 C -0.13 -3.62 9.32 22.27 0.21 -3.41 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.07 1.05 8.08 -2.38 -0.02 1.03 16 28 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.12 3.58 7.72 -2.91 -0.02 3.55 16 31 H 0.05 1.65 6.50 -2.39 -0.02 1.63 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.03 1.08 7.77 -2.39 -0.02 1.06 16 35 H 0.08 2.86 7.74 -2.39 -0.02 2.84 16 36 H 0.05 2.60 8.04 -2.38 -0.02 2.58 16 37 H 0.05 2.61 7.76 -2.38 -0.02 2.60 16 38 H 0.38 20.99 6.99 -74.06 -0.52 20.47 16 39 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.08 3.44 7.63 -2.39 -0.02 3.42 16 41 H 0.05 2.07 6.28 -2.39 -0.01 2.06 16 42 H 0.12 3.04 8.04 -2.91 -0.02 3.02 16 Total: -1.00 -58.63 333.69 0.91 -57.72 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: 0.48 Total: 38.32 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 3.88 Total: -32.88 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -3.52 Total: -73.28 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -1.95 Total: -34.46 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -58.63 0.91 -57.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.950 kcal (2) G-P(sol) polarization free energy of solvation -58.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds