Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38237 * 120.00209 * 2 1 4 4 C 1.38226 * 120.00210 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00179 * 359.95196 * 4 3 2 6 6 C 1.50698 * 120.00181 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47064 * 90.00543 * 6 5 4 8 8 N 1.46901 * 109.47148 * 180.02562 * 7 6 5 9 9 C 1.48528 * 110.99636 * 287.39288 * 8 7 6 10 10 C 1.55100 * 103.28619 * 200.33418 * 9 8 7 11 11 C 1.54602 * 102.84408 * 37.30219 * 10 9 8 12 12 O 1.42901 * 110.30996 * 97.11911 * 11 10 9 13 13 C 1.50696 * 110.31058 * 219.19033 * 11 10 9 14 14 H 1.07994 * 120.00136 * 22.76063 * 13 11 10 15 15 C 1.37881 * 119.99843 * 202.76205 * 13 11 10 16 16 N 1.31516 * 119.99580 * 172.47067 * 15 13 11 17 17 Si 1.86790 * 120.00040 * 352.74797 * 15 13 11 18 18 H 1.48504 * 109.47204 * 84.80132 * 17 15 13 19 19 H 1.48503 * 109.47227 * 204.79863 * 17 15 13 20 20 H 1.48497 * 109.47441 * 324.79989 * 17 15 13 21 21 C 1.47897 * 111.00030 * 169.99414 * 8 7 6 22 22 C 1.38245 * 119.99952 * 0.27618 * 5 4 3 23 23 C 1.38232 * 119.99829 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47406 * 90.00473 * 1 2 3 25 25 H 1.08997 * 109.47026 * 210.00340 * 1 2 3 26 26 H 1.09001 * 109.47019 * 330.00001 * 1 2 3 27 27 H 1.08002 * 119.99650 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.00225 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47524 * 329.99872 * 6 5 4 30 30 H 1.09004 * 109.47054 * 209.99643 * 6 5 4 31 31 H 1.08994 * 109.47071 * 59.99409 * 7 6 5 32 32 H 1.09004 * 109.46450 * 299.99469 * 7 6 5 33 33 H 1.09003 * 110.66918 * 318.70778 * 9 8 7 34 34 H 1.08997 * 110.67503 * 81.67709 * 9 8 7 35 35 H 1.09001 * 110.71107 * 278.99719 * 10 9 8 36 36 H 1.08992 * 110.81738 * 155.65805 * 10 9 8 37 37 H 0.96707 * 113.99879 * 57.35857 * 12 11 10 38 38 H 0.96996 * 119.99907 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.91761 * 26.48771 * 21 8 7 40 40 H 1.08995 * 109.91782 * 265.19694 * 21 8 7 41 41 H 1.08000 * 120.00130 * 179.72484 * 22 5 4 42 42 H 1.08005 * 120.00408 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 5.7787 0.0000 -0.0001 7 6 6.2887 0.0005 1.4425 8 7 7.7577 0.0011 1.4425 9 6 8.2904 -1.3220 1.0282 10 6 9.7396 -1.3117 1.5809 11 6 9.5871 -0.5747 2.9314 12 8 9.4773 -1.5163 4.0007 13 6 10.7601 0.3428 3.1619 14 1 11.3426 0.6957 2.3237 15 6 11.0898 0.7318 4.4430 16 7 12.1961 1.4088 4.6604 17 14 9.9691 0.2903 5.8706 18 1 10.2937 -1.0771 6.3504 19 1 10.1681 1.2626 6.9753 20 1 8.5544 0.3343 5.4214 21 6 8.2876 0.2414 2.8022 22 6 3.5805 -1.1972 -0.0048 23 6 2.1981 -1.1971 0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.1421 0.8898 -0.5143 30 1 6.1420 -0.8902 -0.5135 31 1 5.9253 -0.8893 1.9566 32 1 5.9253 0.8907 1.9560 33 1 7.7132 -2.1282 1.4811 34 1 8.2906 -1.4139 -0.0579 35 1 10.4027 -0.7610 0.9137 36 1 10.1026 -2.3278 1.7350 37 1 10.2232 -2.1286 4.0638 38 1 12.4282 1.6822 5.5616 39 1 7.5644 -0.0916 3.5468 40 1 8.5003 1.3020 2.9357 41 1 4.1205 -2.1325 -0.0090 42 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = -30.637606 kcal Electronic energy + Delta-G solvation = -20998.483706 eV Core-core repulsion = 17942.681391 eV Total energy + Delta-G solvation = -3055.802315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62574 -38.65004 -35.73257 -33.96574 -32.26295 -31.18286 -31.00340 -28.94251 -28.17629 -25.95837 -24.05247 -22.80914 -22.64444 -20.86043 -20.24857 -19.51914 -17.19005 -16.27515 -15.70668 -15.52853 -15.14089 -15.01721 -14.84109 -14.15653 -13.96594 -13.72898 -13.50126 -13.15515 -12.77528 -12.64767 -12.57454 -12.27821 -12.24429 -11.91408 -11.70635 -11.38325 -11.13640 -11.03320 -10.91064 -10.69358 -10.53824 -10.44228 -10.10148 -9.99202 -9.14108 -9.00457 -8.60941 -8.54560 -8.36217 -7.87843 -6.10768 -4.19361 1.24442 1.32385 3.49805 3.54529 3.64529 3.71378 4.39961 4.55894 4.68993 4.72236 4.93033 5.01314 5.05607 5.13791 5.24663 5.34835 5.36409 5.40374 5.42830 5.57620 5.58719 5.61410 5.76099 5.79969 5.90881 5.98233 6.01598 6.10743 6.15941 6.23374 6.32624 6.35389 6.48213 6.54853 6.63755 6.70437 6.88056 6.94438 7.18616 7.43599 7.60793 7.64788 8.24220 8.75432 8.93687 9.52558 10.98907 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.003619 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.200591 B = 7735.839327 C = 7993.751368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.079 4.079 6 C -0.075 4.075 7 C 0.054 3.946 8 N -0.515 5.515 9 C 0.035 3.965 10 C -0.136 4.136 11 C 0.213 3.787 12 O -0.572 6.572 13 C -0.545 4.545 14 H 0.079 0.921 15 C 0.072 3.928 16 N -0.892 5.892 17 Si 0.942 3.058 18 H -0.291 1.291 19 H -0.324 1.324 20 H -0.273 1.273 21 C 0.053 3.947 22 C -0.114 4.114 23 C -0.120 4.120 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.370 0.630 38 H 0.265 0.735 39 H 0.035 0.965 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.329 -4.771 -9.749 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.079 4.079 6 C -0.113 4.113 7 C -0.075 4.075 8 N -0.239 5.239 9 C -0.093 4.093 10 C -0.174 4.174 11 C 0.173 3.827 12 O -0.380 6.380 13 C -0.583 4.583 14 H 0.097 0.903 15 C -0.132 4.132 16 N -0.528 5.528 17 Si 0.777 3.223 18 H -0.218 1.218 19 H -0.255 1.255 20 H -0.199 1.199 21 C -0.075 4.075 22 C -0.132 4.132 23 C -0.139 4.139 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.218 0.782 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.606 -3.944 -9.894 22.312 hybrid contribution -0.259 -1.069 1.276 1.685 sum -19.865 -5.013 -8.618 22.227 Atomic orbital electron populations 1.20767 0.91458 1.02610 1.02088 1.19889 0.95912 0.93321 1.00675 1.21015 0.94228 0.97399 1.01147 1.21102 0.94038 0.97878 0.99951 1.19973 0.95973 0.93079 0.98912 1.20572 0.89574 1.03526 0.97597 1.22207 0.89092 1.00744 0.95409 1.64799 1.05969 1.28429 1.24692 1.23236 0.96471 0.90044 0.99524 1.23144 0.94959 0.99930 0.99408 1.20002 0.93589 0.86400 0.82686 1.86119 1.49203 1.48727 1.53917 1.21334 1.12456 1.29862 0.94626 0.90282 1.25116 0.94798 0.93640 0.99669 1.69981 1.23010 1.37856 1.22000 0.85817 0.81348 0.75864 0.79262 1.21810 1.25515 1.19868 1.23263 0.95693 1.01540 0.86979 1.21071 0.94069 0.97741 1.00322 1.20996 0.94184 0.97393 1.01278 0.91396 0.91726 0.91684 0.86265 0.85853 0.90088 0.91143 0.95030 0.91139 0.94636 0.91238 0.90407 0.92089 0.78199 0.92616 0.94684 0.89223 0.86201 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.10 -0.99 5.88 -104.63 -0.62 -1.61 16 3 C -0.12 -1.26 9.70 -39.59 -0.38 -1.64 16 4 C -0.11 -1.29 9.70 -39.59 -0.38 -1.67 16 5 C -0.08 -0.96 5.13 -104.62 -0.54 -1.50 16 6 C -0.08 -0.97 5.44 -27.88 -0.15 -1.12 16 7 C 0.05 0.85 4.69 -3.82 -0.02 0.83 16 8 N -0.51 -9.56 5.25 -230.35 -1.21 -10.76 16 9 C 0.04 0.60 5.91 -1.81 -0.01 0.59 16 10 C -0.14 -2.65 6.34 -24.78 -0.16 -2.81 16 11 C 0.21 4.90 0.84 -90.41 -0.08 4.83 16 12 O -0.57 -12.87 8.71 -35.23 -0.31 -13.18 16 13 C -0.55 -14.97 8.55 -34.44 -0.29 -15.27 16 14 H 0.08 2.37 7.81 -52.49 -0.41 1.96 16 15 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 16 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 17 Si 0.94 24.06 24.82 -169.99 -4.22 19.84 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.32 -8.43 7.11 56.52 0.40 -8.03 16 20 H -0.27 -6.91 5.84 56.52 0.33 -6.58 16 21 C 0.05 1.16 4.94 -2.76 -0.01 1.15 16 22 C -0.11 -1.30 9.70 -39.58 -0.38 -1.69 16 23 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 30 H 0.07 0.88 7.31 -51.93 -0.38 0.50 16 31 H 0.03 0.51 7.83 -51.93 -0.41 0.10 16 32 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.04 0.60 7.81 -51.93 -0.41 0.19 16 34 H 0.07 1.05 7.80 -51.93 -0.40 0.65 16 35 H 0.08 1.58 7.69 -51.93 -0.40 1.18 16 36 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 37 H 0.37 7.31 9.01 45.56 0.41 7.72 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.03 0.79 6.99 -51.93 -0.36 0.42 16 40 H 0.09 2.13 7.68 -51.93 -0.40 1.73 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -31.15 333.74 -9.25 -40.40 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.17 Total: 5.07 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -3.15 Total: -20.06 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.43 Total: -37.11 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.31 Total: -13.18 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.22 Total: 19.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.15 -9.25 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.766 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds