Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38237 * 120.00209 * 2 1 4 4 C 1.38226 * 120.00210 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00179 * 359.95196 * 4 3 2 6 6 C 1.50698 * 120.00181 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47064 * 90.00543 * 6 5 4 8 8 N 1.46901 * 109.47148 * 180.02562 * 7 6 5 9 9 C 1.48528 * 110.99636 * 287.39288 * 8 7 6 10 10 C 1.55100 * 103.28619 * 200.33418 * 9 8 7 11 11 C 1.54602 * 102.84408 * 37.30219 * 10 9 8 12 12 O 1.42901 * 110.30996 * 97.11911 * 11 10 9 13 13 C 1.50696 * 110.31058 * 219.19033 * 11 10 9 14 14 H 1.07994 * 120.00136 * 22.76063 * 13 11 10 15 15 C 1.37881 * 119.99843 * 202.76205 * 13 11 10 16 16 N 1.31516 * 119.99580 * 172.47067 * 15 13 11 17 17 Si 1.86790 * 120.00040 * 352.74797 * 15 13 11 18 18 H 1.48504 * 109.47204 * 84.80132 * 17 15 13 19 19 H 1.48503 * 109.47227 * 204.79863 * 17 15 13 20 20 H 1.48497 * 109.47441 * 324.79989 * 17 15 13 21 21 C 1.47897 * 111.00030 * 169.99414 * 8 7 6 22 22 C 1.38245 * 119.99952 * 0.27618 * 5 4 3 23 23 C 1.38232 * 119.99829 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47406 * 90.00473 * 1 2 3 25 25 H 1.08997 * 109.47026 * 210.00340 * 1 2 3 26 26 H 1.09001 * 109.47019 * 330.00001 * 1 2 3 27 27 H 1.08002 * 119.99650 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.00225 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47524 * 329.99872 * 6 5 4 30 30 H 1.09004 * 109.47054 * 209.99643 * 6 5 4 31 31 H 1.08994 * 109.47071 * 59.99409 * 7 6 5 32 32 H 1.09004 * 109.46450 * 299.99469 * 7 6 5 33 33 H 1.09003 * 110.66918 * 318.70778 * 9 8 7 34 34 H 1.08997 * 110.67503 * 81.67709 * 9 8 7 35 35 H 1.09001 * 110.71107 * 278.99719 * 10 9 8 36 36 H 1.08992 * 110.81738 * 155.65805 * 10 9 8 37 37 H 0.96707 * 113.99879 * 57.35857 * 12 11 10 38 38 H 0.96996 * 119.99907 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.91761 * 26.48771 * 21 8 7 40 40 H 1.08995 * 109.91782 * 265.19694 * 21 8 7 41 41 H 1.08000 * 120.00130 * 179.72484 * 22 5 4 42 42 H 1.08005 * 120.00408 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 5.7787 0.0000 -0.0001 7 6 6.2887 0.0005 1.4425 8 7 7.7577 0.0011 1.4425 9 6 8.2904 -1.3220 1.0282 10 6 9.7396 -1.3117 1.5809 11 6 9.5871 -0.5747 2.9314 12 8 9.4773 -1.5163 4.0007 13 6 10.7601 0.3428 3.1619 14 1 11.3426 0.6957 2.3237 15 6 11.0898 0.7318 4.4430 16 7 12.1961 1.4088 4.6604 17 14 9.9691 0.2903 5.8706 18 1 10.2937 -1.0771 6.3504 19 1 10.1681 1.2626 6.9753 20 1 8.5544 0.3343 5.4214 21 6 8.2876 0.2414 2.8022 22 6 3.5805 -1.1972 -0.0048 23 6 2.1981 -1.1971 0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.1421 0.8898 -0.5143 30 1 6.1420 -0.8902 -0.5135 31 1 5.9253 -0.8893 1.9566 32 1 5.9253 0.8907 1.9560 33 1 7.7132 -2.1282 1.4811 34 1 8.2906 -1.4139 -0.0579 35 1 10.4027 -0.7610 0.9137 36 1 10.1026 -2.3278 1.7350 37 1 10.2232 -2.1286 4.0638 38 1 12.4282 1.6822 5.5616 39 1 7.5644 -0.0916 3.5468 40 1 8.5003 1.3020 2.9357 41 1 4.1205 -2.1325 -0.0090 42 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = -51.606310 kcal Electronic energy + Delta-G solvation = -20999.392977 eV Core-core repulsion = 17942.681391 eV Total energy + Delta-G solvation = -3056.711586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62291 -40.08169 -37.26604 -35.03125 -34.43487 -32.41732 -31.79233 -30.18771 -29.87770 -27.16239 -25.75673 -23.86924 -23.58434 -22.05509 -21.47279 -21.19951 -19.23254 -17.39774 -17.09616 -16.80206 -16.60272 -16.38978 -15.96859 -15.57735 -15.27504 -14.83032 -14.63015 -14.28731 -14.21601 -14.02175 -13.93752 -13.69813 -13.42654 -13.08478 -13.05090 -12.74529 -12.57081 -12.25344 -12.17359 -12.11390 -11.96926 -11.84982 -11.79991 -11.56205 -11.19027 -10.68957 -10.30798 -9.81057 -9.40408 -9.31445 -8.34198 -6.44343 0.42571 0.51835 1.44494 1.47011 1.66531 2.42377 2.78799 2.99146 3.05240 3.61269 3.88094 3.92761 3.97654 4.10650 4.17197 4.18644 4.25587 4.28588 4.46114 4.48153 4.57231 4.60441 4.63756 4.71430 4.83466 4.84676 4.94409 4.96625 4.99717 5.03342 5.16588 5.23564 5.28982 5.34124 5.38798 5.53787 5.62191 5.72286 5.76748 5.92466 6.09285 6.15550 6.18797 6.62535 7.01021 7.33269 8.79630 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.003619 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.200591 B = 7735.839327 C = 7993.751368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.096 4.096 6 C -0.062 4.062 7 C 0.058 3.942 8 N -0.522 5.522 9 C 0.043 3.957 10 C -0.132 4.132 11 C 0.208 3.792 12 O -0.573 6.573 13 C -0.542 4.542 14 H 0.041 0.959 15 C 0.023 3.977 16 N -0.939 5.939 17 Si 1.001 2.999 18 H -0.277 1.277 19 H -0.332 1.332 20 H -0.270 1.270 21 C 0.059 3.941 22 C -0.123 4.123 23 C -0.129 4.129 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.382 0.618 38 H 0.266 0.734 39 H 0.030 0.970 40 H 0.062 0.938 41 H 0.129 0.871 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.948 -6.478 -10.385 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.097 4.097 6 C -0.100 4.100 7 C -0.070 4.070 8 N -0.247 5.247 9 C -0.084 4.084 10 C -0.171 4.171 11 C 0.168 3.832 12 O -0.383 6.383 13 C -0.580 4.580 14 H 0.059 0.941 15 C -0.176 4.176 16 N -0.578 5.578 17 Si 0.834 3.166 18 H -0.204 1.204 19 H -0.264 1.264 20 H -0.196 1.196 21 C -0.069 4.069 22 C -0.141 4.141 23 C -0.147 4.147 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.144 0.856 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.232 0.768 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.233 -5.676 -10.551 25.255 hybrid contribution 0.540 -0.517 1.390 1.578 sum -21.693 -6.193 -9.161 24.349 Atomic orbital electron populations 1.20819 0.89476 1.03488 1.03035 1.20281 0.97503 0.93053 0.99390 1.21290 0.93997 0.98542 1.00898 1.21273 0.94803 0.97945 1.00272 1.19945 0.95398 0.93765 1.00556 1.20418 0.90318 1.03745 0.95516 1.22230 0.87037 1.00395 0.97370 1.64767 1.07941 1.29754 1.22234 1.23262 0.94511 0.89499 1.01129 1.23054 0.96653 1.00403 0.96944 1.19939 0.92216 0.86337 0.84703 1.86068 1.49811 1.48604 1.53770 1.21600 1.13197 1.29926 0.93242 0.94089 1.25840 0.95783 0.93807 1.02187 1.70095 1.24989 1.40102 1.22593 0.84854 0.79629 0.75867 0.76244 1.20385 1.26413 1.19565 1.22951 0.95196 0.99722 0.89035 1.21265 0.94762 0.97815 1.00290 1.21299 0.94030 0.98491 1.00848 0.90307 0.90803 0.90918 0.84580 0.85603 0.90459 0.90288 0.94965 0.91888 0.93385 0.88521 0.91876 0.89805 0.76789 0.92551 0.95138 0.91957 0.85298 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.61 16 2 C -0.10 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 4 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 5 C -0.10 -2.20 5.13 -19.86 -0.10 -2.30 16 6 C -0.06 -1.51 5.44 29.85 0.16 -1.35 16 7 C 0.06 1.73 4.69 86.31 0.40 2.13 16 8 N -0.52 -18.70 5.25 -882.68 -4.63 -23.33 16 9 C 0.04 1.37 5.91 86.71 0.51 1.88 16 10 C -0.13 -4.93 6.34 31.86 0.20 -4.73 16 11 C 0.21 9.42 0.84 -10.66 -0.01 9.41 16 12 O -0.57 -24.65 8.71 -148.98 -1.30 -25.95 16 13 C -0.54 -30.34 8.55 25.60 0.22 -30.12 16 14 H 0.04 2.56 7.81 -2.91 -0.02 2.53 16 15 C 0.02 1.33 5.46 84.66 0.46 1.79 16 16 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 17 Si 1.00 49.82 24.82 68.60 1.70 51.52 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.33 -16.87 7.11 99.48 0.71 -16.16 16 20 H -0.27 -13.19 5.84 99.48 0.58 -12.61 16 21 C 0.06 2.58 4.94 86.45 0.43 3.01 16 22 C -0.12 -2.57 9.70 22.27 0.22 -2.35 16 23 C -0.13 -2.38 9.70 22.27 0.22 -2.17 16 24 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 26 H 0.07 0.75 8.09 -2.39 -0.02 0.74 16 27 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 29 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 30 H 0.08 1.76 7.31 -2.38 -0.02 1.74 16 31 H 0.03 0.96 7.83 -2.39 -0.02 0.95 16 32 H 0.06 1.95 8.08 -2.38 -0.02 1.93 16 33 H 0.05 1.43 7.81 -2.39 -0.02 1.41 16 34 H 0.10 2.58 7.80 -2.39 -0.02 2.56 16 35 H 0.06 2.53 7.69 -2.39 -0.02 2.51 16 36 H 0.08 2.72 8.01 -2.39 -0.02 2.70 16 37 H 0.38 14.22 9.01 -74.05 -0.67 13.56 16 38 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.03 1.34 6.99 -2.38 -0.02 1.32 16 40 H 0.06 3.01 7.68 -2.39 -0.02 2.99 16 41 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -67.39 333.74 0.01 -67.37 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.20 Total: 20.85 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 3.74 Total: -32.13 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -4.33 Total: -81.67 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.30 Total: -25.95 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.70 Total: 51.52 kcal Total: -67.39 0.01 -67.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.767 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds