Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38239 * 119.99820 * 2 1 4 4 C 1.38235 * 119.99610 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00331 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46999 * 90.00331 * 6 5 4 8 8 N 1.46906 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.48539 * 110.99911 * 52.60113 * 8 7 6 10 10 C 1.54934 * 103.22340 * 159.72267 * 9 8 7 11 11 C 1.54597 * 102.92270 * 322.58191 * 10 9 8 12 12 O 1.42891 * 110.39600 * 262.99840 * 11 10 9 13 13 C 1.50702 * 110.30497 * 140.87313 * 11 10 9 14 14 H 1.08001 * 120.00273 * 244.28303 * 13 11 10 15 15 C 1.37880 * 119.99811 * 64.29038 * 13 11 10 16 16 N 1.31509 * 120.00224 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99738 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47320 * 60.00007 * 17 15 13 19 19 H 1.48506 * 109.46736 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46930 * 299.99301 * 17 15 13 21 21 C 1.47897 * 110.99785 * 169.99856 * 8 7 6 22 22 C 1.38236 * 119.99623 * 0.25703 * 5 4 3 23 23 C 1.38230 * 120.00129 * 359.46635 * 22 5 4 24 24 H 1.09000 * 109.47207 * 89.99918 * 1 2 3 25 25 H 1.09004 * 109.46681 * 210.00129 * 1 2 3 26 26 H 1.09003 * 109.46890 * 329.99791 * 1 2 3 27 27 H 1.07992 * 119.99975 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.99293 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47328 * 330.00256 * 6 5 4 30 30 H 1.09004 * 109.47043 * 210.00066 * 6 5 4 31 31 H 1.08992 * 109.47056 * 59.99641 * 7 6 5 32 32 H 1.09004 * 109.47006 * 299.99757 * 7 6 5 33 33 H 1.08998 * 110.66256 * 278.15595 * 9 8 7 34 34 H 1.08992 * 110.66782 * 41.28665 * 9 8 7 35 35 H 1.09000 * 110.72116 * 204.22504 * 10 9 8 36 36 H 1.08998 * 110.87635 * 81.01810 * 10 9 8 37 37 H 0.96700 * 114.00379 * 295.76618 * 12 11 10 38 38 H 0.96999 * 120.00108 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.92311 * 333.50472 * 21 8 7 40 40 H 1.08999 * 109.91892 * 94.80211 * 21 8 7 41 41 H 1.08000 * 119.99580 * 179.73028 * 22 5 4 42 42 H 1.08006 * 120.00000 * 180.27823 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7787 0.0001 -0.0017 7 6 6.2898 0.0007 1.4404 8 7 7.7589 0.0001 1.4393 9 6 8.2910 1.1011 0.5961 10 6 9.7392 1.2784 1.1171 11 6 9.5894 1.0513 2.6389 12 8 9.4804 2.3024 3.3207 13 6 10.7629 0.2683 3.1689 14 1 10.6115 -0.7172 3.5839 15 6 12.0300 0.8102 3.1239 16 7 12.2146 2.0100 2.6182 17 14 13.4846 -0.1601 3.7815 18 1 13.6119 -1.4332 3.0277 19 1 14.7264 0.6377 3.6180 20 1 13.2719 -0.4562 5.2211 21 6 8.2900 0.2405 2.7985 22 6 3.5805 -1.1971 -0.0054 23 6 2.1983 -1.1971 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.1417 0.8899 -0.5162 30 1 6.1417 -0.8901 -0.5155 31 1 5.9269 -0.8890 1.9549 32 1 5.9269 0.8909 1.9542 33 1 8.2928 0.8139 -0.4554 34 1 7.7139 2.0136 0.7456 35 1 10.1026 2.2853 0.9113 36 1 10.4034 0.5332 0.6794 37 1 10.2701 2.8564 3.2548 38 1 13.1060 2.3910 2.5863 39 1 7.5675 0.8086 3.3845 40 1 8.5032 -0.7102 3.2874 41 1 4.1206 -2.1324 -0.0098 42 1 1.6582 -2.1325 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = -35.441098 kcal Electronic energy + Delta-G solvation = -20907.037519 eV Core-core repulsion = 17851.026909 eV Total energy + Delta-G solvation = -3056.010610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.58844 -38.35058 -35.38697 -33.71953 -32.04143 -30.96521 -30.89355 -28.71312 -27.90317 -25.84041 -24.11471 -22.76855 -22.56203 -20.82370 -19.79347 -19.30051 -17.07292 -16.15989 -15.67542 -15.36833 -14.97610 -14.88729 -14.53753 -13.93658 -13.89927 -13.74099 -13.45259 -13.03792 -12.69526 -12.56894 -12.25583 -12.13303 -11.93344 -11.72624 -11.29713 -11.12950 -11.05101 -10.87902 -10.81508 -10.60097 -10.49299 -10.46017 -10.24948 -9.89444 -9.13461 -8.96618 -8.56825 -8.47461 -8.07167 -7.74197 -6.16807 -4.22759 1.28409 1.36264 3.27923 3.32052 3.35623 3.68646 4.34643 4.53821 4.72789 4.76750 4.96944 5.06991 5.08763 5.14190 5.35837 5.38117 5.42889 5.48059 5.61113 5.64153 5.75122 5.83221 5.93572 6.03267 6.06721 6.12833 6.18851 6.28037 6.32948 6.39168 6.48935 6.51768 6.54535 6.68619 6.96585 6.98365 7.10079 7.32780 7.55570 7.69913 7.76018 7.88724 8.19905 8.78507 9.44167 9.56370 10.90871 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.046353 B = 0.003171 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.915392 B = 8828.284771 C = 9008.545747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.077 4.077 6 C -0.081 4.081 7 C 0.055 3.945 8 N -0.515 5.515 9 C 0.031 3.969 10 C -0.119 4.119 11 C 0.243 3.757 12 O -0.595 6.595 13 C -0.528 4.528 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.054 3.946 22 C -0.112 4.112 23 C -0.120 4.120 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.383 0.617 38 H 0.267 0.733 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 -2.635 -6.684 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.078 4.078 6 C -0.119 4.119 7 C -0.074 4.074 8 N -0.239 5.239 9 C -0.097 4.097 10 C -0.158 4.158 11 C 0.203 3.797 12 O -0.405 6.405 13 C -0.566 4.566 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.073 4.073 22 C -0.130 4.130 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.048 -3.249 -6.762 19.545 hybrid contribution 1.131 0.531 0.486 1.341 sum -16.916 -2.717 -6.277 18.247 Atomic orbital electron populations 1.20767 0.91474 1.02584 1.02065 1.19887 0.95891 0.93326 1.00757 1.20999 0.94171 0.97401 1.01202 1.21091 0.94089 0.97832 1.00126 1.19964 0.95930 0.93085 0.98827 1.20692 0.89836 1.03560 0.97784 1.22227 0.89391 1.00559 0.95203 1.64865 1.05550 1.43558 1.09938 1.23290 0.97764 0.91680 0.96939 1.22981 0.92518 1.01321 0.98960 1.19350 0.90674 0.81922 0.87751 1.86081 1.44590 1.32162 1.77702 1.21678 0.91823 1.02620 1.40481 0.92038 1.25016 0.98994 0.95107 0.94283 1.69609 1.23177 1.15671 1.45671 0.86517 0.81188 0.79932 0.79541 1.20112 1.21237 1.20155 1.22871 0.96495 0.99487 0.88485 1.21086 0.94020 0.97809 1.00116 1.20999 0.94205 0.97357 1.01271 0.91425 0.91715 0.91720 0.86325 0.86122 0.90850 0.90215 0.91212 0.95099 0.91688 0.94934 0.91804 0.91410 0.76530 0.92317 0.94647 0.90382 0.85923 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.10 -1.02 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 4 C -0.11 -1.37 9.70 -39.58 -0.38 -1.76 16 5 C -0.08 -0.98 5.13 -104.63 -0.54 -1.52 16 6 C -0.08 -1.11 5.00 -27.88 -0.14 -1.25 16 7 C 0.05 0.89 5.01 -3.82 -0.02 0.87 16 8 N -0.51 -10.13 5.40 -230.45 -1.24 -11.37 16 9 C 0.03 0.61 5.10 -1.90 -0.01 0.60 16 10 C -0.12 -2.80 5.50 -24.87 -0.14 -2.94 16 11 C 0.24 6.17 0.99 -90.41 -0.09 6.08 16 12 O -0.60 -15.86 12.93 -35.23 -0.46 -16.32 16 13 C -0.53 -14.40 8.10 -34.44 -0.28 -14.68 16 14 H 0.06 1.67 7.34 -52.49 -0.39 1.29 16 15 C 0.07 1.81 5.26 -17.82 -0.09 1.71 16 16 N -0.90 -24.33 10.88 55.43 0.60 -23.73 16 17 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.05 1.22 6.17 -2.75 -0.02 1.20 16 22 C -0.11 -1.31 9.70 -39.59 -0.38 -1.69 16 23 C -0.12 -1.27 9.70 -39.59 -0.38 -1.66 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 30 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 33 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 34 H 0.03 0.63 8.00 -51.93 -0.42 0.22 16 35 H 0.06 1.55 8.06 -51.93 -0.42 1.13 16 36 H 0.07 1.68 7.85 -51.93 -0.41 1.28 16 37 H 0.38 10.34 7.05 45.56 0.32 10.66 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.04 0.79 7.39 -51.93 -0.38 0.41 16 40 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -28.26 337.41 -10.30 -38.56 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.16 Total: 10.67 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -3.11 Total: -18.84 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.64 Total: -35.10 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.46 Total: -16.32 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.26 -10.30 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.121 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds