Wall clock time and date at job start Mon Mar 30 2020 02:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38239 * 119.99820 * 2 1 4 4 C 1.38235 * 119.99610 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00331 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46999 * 90.00331 * 6 5 4 8 8 N 1.46906 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.48539 * 110.99911 * 52.60113 * 8 7 6 10 10 C 1.54934 * 103.22340 * 159.72267 * 9 8 7 11 11 C 1.54597 * 102.92270 * 322.58191 * 10 9 8 12 12 O 1.42891 * 110.39600 * 262.99840 * 11 10 9 13 13 C 1.50702 * 110.30497 * 140.87313 * 11 10 9 14 14 H 1.08001 * 120.00273 * 244.28303 * 13 11 10 15 15 C 1.37880 * 119.99811 * 64.29038 * 13 11 10 16 16 N 1.31509 * 120.00224 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99738 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47320 * 60.00007 * 17 15 13 19 19 H 1.48506 * 109.46736 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46930 * 299.99301 * 17 15 13 21 21 C 1.47897 * 110.99785 * 169.99856 * 8 7 6 22 22 C 1.38236 * 119.99623 * 0.25703 * 5 4 3 23 23 C 1.38230 * 120.00129 * 359.46635 * 22 5 4 24 24 H 1.09000 * 109.47207 * 89.99918 * 1 2 3 25 25 H 1.09004 * 109.46681 * 210.00129 * 1 2 3 26 26 H 1.09003 * 109.46890 * 329.99791 * 1 2 3 27 27 H 1.07992 * 119.99975 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.99293 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47328 * 330.00256 * 6 5 4 30 30 H 1.09004 * 109.47043 * 210.00066 * 6 5 4 31 31 H 1.08992 * 109.47056 * 59.99641 * 7 6 5 32 32 H 1.09004 * 109.47006 * 299.99757 * 7 6 5 33 33 H 1.08998 * 110.66256 * 278.15595 * 9 8 7 34 34 H 1.08992 * 110.66782 * 41.28665 * 9 8 7 35 35 H 1.09000 * 110.72116 * 204.22504 * 10 9 8 36 36 H 1.08998 * 110.87635 * 81.01810 * 10 9 8 37 37 H 0.96700 * 114.00379 * 295.76618 * 12 11 10 38 38 H 0.96999 * 120.00108 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.92311 * 333.50472 * 21 8 7 40 40 H 1.08999 * 109.91892 * 94.80211 * 21 8 7 41 41 H 1.08000 * 119.99580 * 179.73028 * 22 5 4 42 42 H 1.08006 * 120.00000 * 180.27823 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7787 0.0001 -0.0017 7 6 6.2898 0.0007 1.4404 8 7 7.7589 0.0001 1.4393 9 6 8.2910 1.1011 0.5961 10 6 9.7392 1.2784 1.1171 11 6 9.5894 1.0513 2.6389 12 8 9.4804 2.3024 3.3207 13 6 10.7629 0.2683 3.1689 14 1 10.6115 -0.7172 3.5839 15 6 12.0300 0.8102 3.1239 16 7 12.2146 2.0100 2.6182 17 14 13.4846 -0.1601 3.7815 18 1 13.6119 -1.4332 3.0277 19 1 14.7264 0.6377 3.6180 20 1 13.2719 -0.4562 5.2211 21 6 8.2900 0.2405 2.7985 22 6 3.5805 -1.1971 -0.0054 23 6 2.1983 -1.1971 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.1417 0.8899 -0.5162 30 1 6.1417 -0.8901 -0.5155 31 1 5.9269 -0.8890 1.9549 32 1 5.9269 0.8909 1.9542 33 1 8.2928 0.8139 -0.4554 34 1 7.7139 2.0136 0.7456 35 1 10.1026 2.2853 0.9113 36 1 10.4034 0.5332 0.6794 37 1 10.2701 2.8564 3.2548 38 1 13.1060 2.3910 2.5863 39 1 7.5675 0.8086 3.3845 40 1 8.5032 -0.7102 3.2874 41 1 4.1206 -2.1324 -0.0098 42 1 1.6582 -2.1325 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:54 Heat of formation + Delta-G solvation = -52.545236 kcal Electronic energy + Delta-G solvation = -20907.779210 eV Core-core repulsion = 17851.026909 eV Total energy + Delta-G solvation = -3056.752301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58831 -39.93154 -37.04769 -34.90637 -34.13162 -32.22042 -31.78941 -30.18932 -29.59261 -27.14543 -25.76811 -23.92475 -23.58376 -21.96486 -21.31190 -21.02629 -19.12256 -17.23782 -16.95290 -16.76138 -16.62586 -16.09905 -15.96873 -15.66263 -15.20131 -14.63137 -14.48872 -14.26300 -14.09110 -13.85427 -13.78160 -13.39564 -13.21569 -13.03378 -12.94767 -12.75727 -12.48023 -12.37005 -12.24103 -12.05489 -11.97967 -11.91969 -11.78779 -11.64580 -11.08253 -10.60732 -10.10360 -9.80761 -9.36715 -9.33572 -8.21321 -6.35113 0.42850 0.52209 1.42517 1.42883 1.51036 2.39654 2.80574 2.99801 3.14423 3.84983 3.92871 3.97695 4.06800 4.15978 4.18101 4.18672 4.31558 4.39545 4.49230 4.53864 4.61078 4.63264 4.64603 4.82078 4.84781 4.86142 4.95862 4.99420 5.09513 5.14034 5.23568 5.25720 5.33562 5.41497 5.54101 5.60244 5.72710 5.76756 5.77255 5.96860 6.14460 6.16083 6.23126 6.68842 7.34669 7.44614 8.84671 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.046353 B = 0.003171 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.915392 B = 8828.284771 C = 9008.545747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.127 4.127 5 C -0.096 4.096 6 C -0.069 4.069 7 C 0.058 3.942 8 N -0.516 5.516 9 C 0.043 3.957 10 C -0.112 4.112 11 C 0.226 3.774 12 O -0.603 6.603 13 C -0.555 4.555 14 H 0.054 0.946 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 0.961 3.039 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.275 1.275 21 C 0.061 3.939 22 C -0.121 4.121 23 C -0.127 4.127 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.121 0.879 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.023 0.977 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.378 0.622 38 H 0.270 0.730 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.191 -3.434 -7.292 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.147 4.147 4 C -0.145 4.145 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.070 4.070 8 N -0.240 5.240 9 C -0.084 4.084 10 C -0.151 4.151 11 C 0.186 3.814 12 O -0.413 6.413 13 C -0.593 4.593 14 H 0.072 0.928 15 C -0.173 4.173 16 N -0.556 5.556 17 Si 0.787 3.213 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.200 1.200 21 C -0.067 4.067 22 C -0.139 4.139 23 C -0.145 4.145 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.139 0.861 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.149 0.851 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.499 -4.049 -7.378 21.238 hybrid contribution 1.510 0.792 0.679 1.835 sum -17.989 -3.257 -6.699 19.470 Atomic orbital electron populations 1.20822 0.89376 1.03536 1.03045 1.20289 0.97546 0.92998 0.99324 1.21270 0.93848 0.98608 1.00939 1.21238 0.94924 0.97776 1.00608 1.19905 0.95177 0.93856 1.00671 1.20541 0.90827 1.03636 0.95687 1.22271 0.86976 1.00450 0.97270 1.64854 1.07809 1.43284 1.08097 1.23203 0.95054 0.92069 0.98100 1.22775 0.94671 0.99707 0.97980 1.19627 0.91691 0.81478 0.88599 1.86074 1.44274 1.32720 1.78213 1.21932 0.93154 1.02782 1.41464 0.92786 1.25715 1.01220 0.96050 0.94359 1.69690 1.23748 1.16446 1.45689 0.85568 0.78248 0.78716 0.78809 1.19751 1.20503 1.20003 1.22710 0.95290 0.98555 0.90152 1.21276 0.94784 0.97799 1.00045 1.21309 0.93952 0.98522 1.00673 0.90314 0.90676 0.90931 0.84620 0.86070 0.90980 0.89858 0.90570 0.95879 0.89109 0.94559 0.93274 0.93257 0.77155 0.92110 0.95050 0.90913 0.85085 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.63 16 2 C -0.10 -1.87 5.88 -19.86 -0.12 -1.98 16 3 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 4 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 5 C -0.10 -2.31 5.13 -19.87 -0.10 -2.41 16 6 C -0.07 -1.82 5.00 29.85 0.15 -1.67 16 7 C 0.06 1.85 5.01 86.30 0.43 2.28 16 8 N -0.52 -19.98 5.40 -883.01 -4.76 -24.74 16 9 C 0.04 1.67 5.10 86.65 0.44 2.11 16 10 C -0.11 -5.36 5.50 31.80 0.17 -5.18 16 11 C 0.23 11.64 0.99 -10.66 -0.01 11.63 16 12 O -0.60 -32.80 12.93 -148.98 -1.93 -34.72 16 13 C -0.56 -30.76 8.10 25.60 0.21 -30.55 16 14 H 0.05 2.99 7.34 -2.91 -0.02 2.97 16 15 C 0.03 1.42 5.26 84.66 0.45 1.87 16 16 N -0.92 -49.88 10.88 21.45 0.23 -49.65 16 17 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 C 0.06 2.76 6.17 86.45 0.53 3.29 16 22 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 23 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 26 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.07 1.88 6.74 -2.39 -0.02 1.87 16 30 H 0.08 2.11 8.08 -2.38 -0.02 2.09 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.02 0.77 7.81 -2.38 -0.02 0.75 16 33 H 0.09 3.05 7.66 -2.39 -0.02 3.04 16 34 H 0.04 1.38 8.00 -2.39 -0.02 1.36 16 35 H 0.05 2.43 8.06 -2.39 -0.02 2.41 16 36 H 0.05 2.48 7.85 -2.39 -0.02 2.46 16 37 H 0.38 20.93 7.05 -74.06 -0.52 20.41 16 38 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.03 1.42 7.39 -2.39 -0.02 1.40 16 40 H 0.07 3.33 7.39 -2.39 -0.02 3.31 16 41 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -59.86 337.41 -0.23 -60.09 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.47 Total: 34.93 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.73 Total: -30.94 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -4.53 Total: -74.39 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.93 Total: -34.72 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -59.86 -0.23 -60.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.544 kcal (2) G-P(sol) polarization free energy of solvation -59.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds