Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 119.99659 * 2 1 4 4 C 1.38215 * 119.99942 * 179.79463 * 3 2 1 5 5 C 1.38254 * 119.99755 * 0.41054 * 4 3 2 6 6 C 1.50706 * 120.00205 * 179.81322 * 5 4 3 7 7 N 1.46900 * 109.46840 * 269.73187 * 6 5 4 8 8 C 1.48720 * 111.01831 * 54.48842 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42893 * 110.32804 * 118.84639 * 10 9 8 12 12 C 1.50712 * 110.32186 * 241.05248 * 10 9 8 13 13 H 1.07993 * 120.00045 * 118.54517 * 12 10 9 14 14 C 1.37880 * 119.99643 * 298.54459 * 12 10 9 15 15 N 1.31518 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99631 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47399 * 60.00281 * 16 14 12 18 18 H 1.48504 * 109.46578 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47041 * 299.99886 * 16 14 12 20 20 C 1.48567 * 110.99718 * 169.99824 * 7 6 5 21 21 C 1.38209 * 120.00292 * 359.54517 * 5 4 3 22 22 C 1.38210 * 120.00167 * 179.97438 * 2 1 3 23 23 C 1.50703 * 120.00170 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.47320 * 270.02171 * 1 2 3 25 25 H 1.08998 * 109.47554 * 30.02142 * 1 2 3 26 26 H 1.09006 * 109.46969 * 150.02523 * 1 2 3 27 27 H 1.08000 * 120.00145 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.00168 * 180.23273 * 4 3 2 29 29 H 1.09003 * 109.47369 * 149.72997 * 6 5 4 30 30 H 1.09000 * 109.46724 * 29.72894 * 6 5 4 31 31 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 32 32 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 33 33 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 34 34 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 35 35 H 0.96693 * 114.00324 * 61.44649 * 11 10 9 36 36 H 0.97001 * 119.99874 * 180.02562 * 15 14 12 37 37 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 38 38 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 39 39 H 1.08005 * 120.00535 * 180.25065 * 21 5 4 40 40 H 1.09003 * 109.46794 * 270.01824 * 23 22 2 41 41 H 1.09002 * 109.46950 * 30.01366 * 23 22 2 42 42 H 1.09000 * 109.47495 * 150.01906 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0043 5 6 4.2717 0.0001 0.0000 6 6 5.7787 0.0001 0.0004 7 7 6.2687 -0.0012 -1.3845 8 6 5.6864 1.1281 -2.1573 9 6 6.6549 1.3254 -3.3433 10 6 8.0004 0.7408 -2.8666 11 8 8.3949 -0.3459 -3.7064 12 6 9.0625 1.8101 -2.8590 13 1 9.5483 2.0821 -1.9336 14 6 9.4138 2.4410 -4.0335 15 7 8.8218 2.1101 -5.1604 16 14 10.7306 3.7659 -4.0243 17 1 12.0075 3.1913 -3.5299 18 1 10.9212 4.2839 -5.4029 19 1 10.3094 4.8762 -3.1326 20 6 7.7340 0.2396 -1.4309 21 6 3.5807 -1.1969 0.0009 22 6 2.1981 -1.1969 0.0005 23 6 1.4447 -2.5021 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6582 2.1326 -0.0004 28 1 4.1203 2.1327 0.0081 29 1 6.1420 -0.8894 0.5152 30 1 6.1419 0.8906 0.5135 31 1 5.6483 2.0284 -1.5439 32 1 4.6908 0.8706 -2.5184 33 1 6.7625 2.3858 -3.5719 34 1 6.2962 0.7846 -4.2190 35 1 8.5327 -0.0986 -4.6310 36 1 9.0692 2.5537 -5.9867 37 1 8.2776 -0.6866 -1.2445 38 1 8.0174 1.0006 -0.7038 39 1 4.1207 -2.1322 0.0017 40 1 1.2624 -2.8163 1.0282 41 1 0.4926 -2.3720 -0.5139 42 1 2.0341 -3.2619 -0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = -31.484812 kcal Electronic energy + Delta-G solvation = -21427.404316 eV Core-core repulsion = 18371.565264 eV Total energy + Delta-G solvation = -3055.839052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.73961 -38.11731 -35.18437 -33.23400 -32.14376 -32.09069 -30.00126 -27.97612 -27.59832 -26.67740 -24.66737 -23.46013 -22.05424 -20.39541 -19.75996 -19.28922 -16.97430 -15.87798 -15.68345 -15.24551 -14.97995 -14.74110 -14.41320 -14.09681 -13.75664 -13.30374 -13.09745 -12.91665 -12.84853 -12.57807 -12.34951 -12.21951 -11.93768 -11.60705 -11.31032 -11.27717 -11.11021 -10.98562 -10.76321 -10.55585 -10.49573 -10.44691 -10.29515 -9.81227 -9.09441 -8.61413 -8.55367 -8.39072 -8.02789 -7.71733 -6.18066 -4.27126 1.44867 1.53964 3.24490 3.29587 3.32291 3.80970 4.31348 4.79786 4.83129 4.86446 4.99642 5.07161 5.09772 5.20062 5.38003 5.43609 5.57351 5.60540 5.65958 5.76665 5.78681 5.82739 5.87028 5.90308 6.03824 6.10145 6.25838 6.26908 6.29714 6.49914 6.56948 6.67587 6.72232 6.83422 6.99797 7.09504 7.16208 7.40975 7.54207 7.59957 7.72261 7.83506 8.24085 8.75611 9.41636 9.60274 10.88449 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033229 B = 0.003938 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.433719 B = 7107.723561 C = 7321.778309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.070 4.070 6 C 0.079 3.921 7 N -0.504 5.504 8 C 0.037 3.963 9 C -0.120 4.120 10 C 0.254 3.746 11 O -0.586 6.586 12 C -0.539 4.539 13 H 0.059 0.941 14 C 0.070 3.930 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.050 3.950 21 C -0.097 4.097 22 C -0.092 4.092 23 C -0.115 4.115 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.378 0.622 36 H 0.267 0.733 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 -3.577 9.617 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.132 4.132 5 C -0.070 4.070 6 C -0.049 4.049 7 N -0.228 5.228 8 C -0.091 4.091 9 C -0.159 4.159 10 C 0.214 3.786 11 O -0.394 6.394 12 C -0.577 4.577 13 H 0.077 0.923 14 C -0.132 4.132 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.078 4.078 21 C -0.115 4.115 22 C -0.092 4.092 23 C -0.171 4.171 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.258 -4.394 9.767 17.832 hybrid contribution 1.007 2.035 -0.234 2.283 sum -13.251 -2.358 9.533 16.493 Atomic orbital electron populations 1.20818 0.91701 1.02605 1.01918 1.19680 0.95649 0.92767 1.01546 1.20919 0.94064 0.97220 1.01457 1.21070 0.94100 0.97685 1.00349 1.19804 0.95401 0.93051 0.98746 1.21244 0.90427 1.01101 0.92101 1.65583 1.06056 1.42126 1.08987 1.23149 0.98631 0.91193 0.96144 1.22846 0.95860 1.01884 0.95264 1.19207 0.90419 0.83908 0.85106 1.86132 1.91246 1.37719 1.24299 1.21687 1.21642 1.19859 0.94520 0.92307 1.24997 0.96069 0.96716 0.95418 1.69709 1.41891 1.42876 0.98840 0.86558 0.82103 0.81648 0.77113 1.20074 1.21129 1.20226 1.23115 0.86632 0.99563 0.98444 1.20882 0.93057 0.97812 0.99793 1.19707 0.93696 0.94709 1.01067 1.20826 0.99997 0.94324 1.01958 0.91556 0.91867 0.91359 0.86430 0.86362 0.90408 0.94255 0.95017 0.91895 0.91193 0.92815 0.77205 0.92291 0.90938 0.93719 0.86027 0.91507 0.91416 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.60 36.01 0.35 -0.68 16 2 C -0.10 -1.17 5.88 -104.62 -0.62 -1.79 16 3 C -0.12 -1.52 9.70 -39.58 -0.38 -1.90 16 4 C -0.11 -1.63 8.39 -39.58 -0.33 -1.96 16 5 C -0.07 -1.06 4.65 -104.62 -0.49 -1.55 16 6 C 0.08 1.31 5.22 -4.97 -0.03 1.28 16 7 N -0.50 -10.12 5.48 -231.26 -1.27 -11.38 16 8 C 0.04 0.75 4.97 -2.09 -0.01 0.74 16 9 C -0.12 -2.87 5.54 -25.35 -0.14 -3.02 16 10 C 0.25 6.47 1.05 -90.39 -0.10 6.37 16 11 O -0.59 -15.84 12.94 -35.23 -0.46 -16.29 16 12 C -0.54 -14.60 8.08 -34.43 -0.28 -14.87 16 13 H 0.06 1.58 7.58 -52.49 -0.40 1.18 16 14 C 0.07 1.88 5.02 -17.82 -0.09 1.79 16 15 N -0.89 -24.16 10.82 55.43 0.60 -23.56 16 16 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.05 1.11 5.77 -2.18 -0.01 1.10 16 21 C -0.10 -1.37 9.36 -39.58 -0.37 -1.74 16 22 C -0.09 -1.16 5.88 -104.62 -0.62 -1.77 16 23 C -0.11 -1.10 9.60 36.01 0.35 -0.76 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.07 0.55 5.95 -51.93 -0.31 0.24 16 27 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.12 1.64 7.41 -52.49 -0.39 1.25 16 29 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 30 H 0.04 0.64 7.82 -51.93 -0.41 0.23 16 31 H 0.03 0.62 7.14 -51.93 -0.37 0.25 16 32 H 0.06 1.25 7.76 -51.93 -0.40 0.85 16 33 H 0.07 1.79 7.24 -51.93 -0.38 1.41 16 34 H 0.05 1.34 7.98 -51.93 -0.41 0.92 16 35 H 0.38 10.30 7.33 45.56 0.33 10.63 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.07 1.62 8.08 -51.93 -0.42 1.20 16 38 H 0.04 0.97 7.38 -51.93 -0.38 0.58 16 39 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.57 5.95 -51.93 -0.31 0.26 16 42 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -28.52 331.41 -9.84 -38.36 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.93 Total: 10.92 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.76 Total: -18.77 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.67 Total: -34.94 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.46 Total: -16.29 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.52 -9.84 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.874 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds