Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38253 * 119.99659 * 2 1 4 4 C 1.38215 * 119.99942 * 179.79463 * 3 2 1 5 5 C 1.38254 * 119.99755 * 0.41054 * 4 3 2 6 6 C 1.50706 * 120.00205 * 179.81322 * 5 4 3 7 7 N 1.46900 * 109.46840 * 269.73187 * 6 5 4 8 8 C 1.48720 * 111.01831 * 54.48842 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42893 * 110.32804 * 118.84639 * 10 9 8 12 12 C 1.50712 * 110.32186 * 241.05248 * 10 9 8 13 13 H 1.07993 * 120.00045 * 118.54517 * 12 10 9 14 14 C 1.37880 * 119.99643 * 298.54459 * 12 10 9 15 15 N 1.31518 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99631 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47399 * 60.00281 * 16 14 12 18 18 H 1.48504 * 109.46578 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47041 * 299.99886 * 16 14 12 20 20 C 1.48567 * 110.99718 * 169.99824 * 7 6 5 21 21 C 1.38209 * 120.00292 * 359.54517 * 5 4 3 22 22 C 1.38210 * 120.00167 * 179.97438 * 2 1 3 23 23 C 1.50703 * 120.00170 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.47320 * 270.02171 * 1 2 3 25 25 H 1.08998 * 109.47554 * 30.02142 * 1 2 3 26 26 H 1.09006 * 109.46969 * 150.02523 * 1 2 3 27 27 H 1.08000 * 120.00145 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.00168 * 180.23273 * 4 3 2 29 29 H 1.09003 * 109.47369 * 149.72997 * 6 5 4 30 30 H 1.09000 * 109.46724 * 29.72894 * 6 5 4 31 31 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 32 32 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 33 33 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 34 34 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 35 35 H 0.96693 * 114.00324 * 61.44649 * 11 10 9 36 36 H 0.97001 * 119.99874 * 180.02562 * 15 14 12 37 37 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 38 38 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 39 39 H 1.08005 * 120.00535 * 180.25065 * 21 5 4 40 40 H 1.09003 * 109.46794 * 270.01824 * 23 22 2 41 41 H 1.09002 * 109.46950 * 30.01366 * 23 22 2 42 42 H 1.09000 * 109.47495 * 150.01906 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0043 5 6 4.2717 0.0001 0.0000 6 6 5.7787 0.0001 0.0004 7 7 6.2687 -0.0012 -1.3845 8 6 5.6864 1.1281 -2.1573 9 6 6.6549 1.3254 -3.3433 10 6 8.0004 0.7408 -2.8666 11 8 8.3949 -0.3459 -3.7064 12 6 9.0625 1.8101 -2.8590 13 1 9.5483 2.0821 -1.9336 14 6 9.4138 2.4410 -4.0335 15 7 8.8218 2.1101 -5.1604 16 14 10.7306 3.7659 -4.0243 17 1 12.0075 3.1913 -3.5299 18 1 10.9212 4.2839 -5.4029 19 1 10.3094 4.8762 -3.1326 20 6 7.7340 0.2396 -1.4309 21 6 3.5807 -1.1969 0.0009 22 6 2.1981 -1.1969 0.0005 23 6 1.4447 -2.5021 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6582 2.1326 -0.0004 28 1 4.1203 2.1327 0.0081 29 1 6.1420 -0.8894 0.5152 30 1 6.1419 0.8906 0.5135 31 1 5.6483 2.0284 -1.5439 32 1 4.6908 0.8706 -2.5184 33 1 6.7625 2.3858 -3.5719 34 1 6.2962 0.7846 -4.2190 35 1 8.5327 -0.0986 -4.6310 36 1 9.0692 2.5537 -5.9867 37 1 8.2776 -0.6866 -1.2445 38 1 8.0174 1.0006 -0.7038 39 1 4.1207 -2.1322 0.0017 40 1 1.2624 -2.8163 1.0282 41 1 0.4926 -2.3720 -0.5139 42 1 2.0341 -3.2619 -0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = -49.349871 kcal Electronic energy + Delta-G solvation = -21428.179003 eV Core-core repulsion = 18371.565264 eV Total energy + Delta-G solvation = -3056.613740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88112 -39.73440 -36.88116 -34.48997 -34.18112 -33.10538 -31.51829 -29.76887 -28.76478 -27.80659 -26.30219 -24.92175 -23.06920 -21.91163 -21.33822 -20.80286 -19.00601 -17.29710 -16.93718 -16.72850 -16.57834 -16.01320 -15.92071 -15.37255 -15.05943 -14.79360 -14.70142 -14.20266 -13.93831 -13.74049 -13.54135 -13.41970 -13.26927 -12.97970 -12.86698 -12.70087 -12.57213 -12.53352 -12.36618 -12.27658 -12.12637 -11.84403 -11.67343 -11.61351 -11.05430 -10.60897 -10.13993 -9.62138 -9.47091 -9.18711 -8.21710 -6.38847 0.42372 0.52624 1.40779 1.41996 1.49727 2.37504 2.75015 3.03036 3.32790 3.73341 3.90584 3.99219 4.05942 4.09491 4.14078 4.24805 4.30359 4.45324 4.48606 4.54948 4.67488 4.70948 4.76622 4.79175 4.86478 4.90665 4.92277 5.05943 5.08239 5.12042 5.19200 5.30310 5.41396 5.44451 5.55158 5.57989 5.68472 5.76386 5.79592 5.84432 6.13662 6.20485 6.24958 6.67917 7.32996 7.46867 8.83440 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033229 B = 0.003938 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.433719 B = 7107.723561 C = 7321.778309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.127 4.127 5 C -0.090 4.090 6 C 0.082 3.918 7 N -0.510 5.510 8 C 0.053 3.947 9 C -0.111 4.111 10 C 0.236 3.764 11 O -0.596 6.596 12 C -0.564 4.564 13 H 0.055 0.945 14 C 0.029 3.971 15 N -0.911 5.911 16 Si 0.960 3.040 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.058 3.942 21 C -0.111 4.111 22 C -0.099 4.099 23 C -0.113 4.113 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.138 0.862 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.373 0.627 36 H 0.269 0.731 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 -3.376 10.608 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.090 4.090 6 C -0.045 4.045 7 N -0.234 5.234 8 C -0.075 4.075 9 C -0.150 4.150 10 C 0.197 3.803 11 O -0.404 6.404 12 C -0.602 4.602 13 H 0.073 0.927 14 C -0.171 4.171 15 N -0.550 5.550 16 Si 0.785 3.215 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.196 1.196 20 C -0.070 4.070 21 C -0.130 4.130 22 C -0.099 4.099 23 C -0.169 4.169 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.155 0.845 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.221 0.779 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.838 -4.200 10.772 19.610 hybrid contribution 1.428 1.937 -0.533 2.465 sum -14.410 -2.262 10.239 17.822 Atomic orbital electron populations 1.20885 0.89246 1.03629 1.03139 1.20114 0.97518 0.92288 0.99958 1.21211 0.93594 0.98561 1.00870 1.21159 0.95021 0.97308 1.01069 1.19732 0.94446 0.93972 1.00844 1.21265 0.91703 1.01715 0.89826 1.65523 1.04554 1.41778 1.11502 1.22954 0.97792 0.91891 0.94868 1.22641 0.96307 0.99970 0.96073 1.19496 0.90678 0.83669 0.86502 1.86125 1.91467 1.38649 1.24120 1.21945 1.22622 1.20913 0.94758 0.92684 1.25708 0.97855 0.98538 0.95026 1.69801 1.42605 1.43461 0.99183 0.85588 0.79437 0.79152 0.77300 1.19931 1.20538 1.19623 1.22950 0.88270 0.99278 0.96505 1.21036 0.94086 0.97519 1.00313 1.20079 0.93323 0.96357 1.00111 1.20881 1.00225 0.92718 1.03114 0.90093 0.91013 0.90234 0.84465 0.86536 0.89377 0.93958 0.94084 0.91191 0.93321 0.94542 0.77852 0.92135 0.91337 0.93310 0.85901 0.90046 0.89915 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.60 71.24 0.68 -0.97 16 2 C -0.10 -2.16 5.88 -19.87 -0.12 -2.27 16 3 C -0.12 -2.95 9.70 22.27 0.22 -2.73 16 4 C -0.13 -3.51 8.39 22.27 0.19 -3.32 16 5 C -0.09 -2.66 4.65 -19.87 -0.09 -2.75 16 6 C 0.08 2.66 5.22 85.56 0.45 3.11 16 7 N -0.51 -20.36 5.48 -885.57 -4.85 -25.21 16 8 C 0.05 2.15 4.97 86.42 0.43 2.58 16 9 C -0.11 -5.44 5.54 31.49 0.17 -5.27 16 10 C 0.24 12.26 1.05 -10.64 -0.01 12.25 16 11 O -0.60 -33.00 12.94 -148.98 -1.93 -34.93 16 12 C -0.56 -30.96 8.08 25.60 0.21 -30.75 16 13 H 0.05 2.98 7.58 -2.91 -0.02 2.96 16 14 C 0.03 1.58 5.02 84.65 0.43 2.00 16 15 N -0.91 -49.87 10.82 21.45 0.23 -49.64 16 16 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 C 0.06 2.58 5.77 86.45 0.50 3.08 16 21 C -0.11 -3.03 9.36 22.27 0.21 -2.82 16 22 C -0.10 -2.29 5.88 -19.86 -0.12 -2.41 16 23 C -0.11 -1.88 9.60 71.24 0.68 -1.19 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 26 H 0.08 1.00 5.95 -2.38 -0.01 0.98 16 27 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 28 H 0.12 3.15 7.41 -2.91 -0.02 3.13 16 29 H 0.09 2.63 8.09 -2.39 -0.02 2.61 16 30 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 31 H 0.04 1.59 7.14 -2.38 -0.02 1.57 16 32 H 0.07 2.76 7.76 -2.39 -0.02 2.74 16 33 H 0.05 2.54 7.24 -2.39 -0.02 2.52 16 34 H 0.04 1.86 7.98 -2.39 -0.02 1.84 16 35 H 0.37 20.95 7.33 -74.06 -0.54 20.41 16 36 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.07 3.09 8.08 -2.39 -0.02 3.07 16 38 H 0.05 2.12 7.38 -2.39 -0.02 2.10 16 39 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.12 5.95 -2.39 -0.01 1.11 16 42 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 Total: -1.00 -60.66 331.41 -0.23 -60.90 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.46 Total: 35.77 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 3.82 Total: -31.46 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -4.62 Total: -74.85 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.93 Total: -34.93 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -60.66 -0.23 -60.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.548 kcal (2) G-P(sol) polarization free energy of solvation -60.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds