Wall clock time and date at job start Mon Mar 30 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38252 * 120.00327 * 2 1 4 4 C 1.38212 * 120.00145 * 179.72684 * 3 2 1 5 5 C 1.38261 * 119.99952 * 0.50112 * 4 3 2 6 6 C 1.50703 * 120.00188 * 179.77084 * 5 4 3 7 7 N 1.46906 * 109.46595 * 259.72775 * 6 5 4 8 8 C 1.47901 * 111.00212 * 69.87413 * 7 6 5 9 9 C 1.53990 * 107.05523 * 145.84023 * 8 7 6 10 10 C 1.54594 * 105.22837 * 358.72473 * 9 8 7 11 11 O 1.42903 * 110.72537 * 96.45092 * 10 9 8 12 12 C 1.50706 * 110.72327 * 219.73003 * 10 9 8 13 13 H 1.08001 * 119.99882 * 24.86603 * 12 10 9 14 14 C 1.37880 * 119.99947 * 204.85872 * 12 10 9 15 15 N 1.31515 * 119.99705 * 173.71635 * 14 12 10 16 16 Si 1.86800 * 120.00221 * 353.72379 * 14 12 10 17 17 H 1.48500 * 109.47163 * 87.21749 * 16 14 12 18 18 H 1.48495 * 109.47145 * 207.21924 * 16 14 12 19 19 H 1.48503 * 109.46946 * 327.21923 * 16 14 12 20 20 C 1.48539 * 110.99683 * 187.27028 * 7 6 5 21 21 C 1.38210 * 119.99689 * 359.49486 * 5 4 3 22 22 C 1.50706 * 120.00073 * 180.27588 * 21 5 4 23 23 C 1.38222 * 119.99773 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46968 * 270.02813 * 1 2 3 25 25 H 1.08998 * 109.46769 * 30.02229 * 1 2 3 26 26 H 1.08998 * 109.47276 * 150.02572 * 1 2 3 27 27 H 1.08002 * 119.99654 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.00439 * 180.27493 * 4 3 2 29 29 H 1.08996 * 109.46979 * 139.72966 * 6 5 4 30 30 H 1.08996 * 109.46992 * 19.72547 * 6 5 4 31 31 H 1.08994 * 109.91575 * 26.49074 * 8 7 6 32 32 H 1.08993 * 110.08096 * 265.28594 * 8 7 6 33 33 H 1.09002 * 110.31146 * 117.69134 * 9 8 7 34 34 H 1.08997 * 110.30741 * 239.75652 * 9 8 7 35 35 H 0.96698 * 113.99884 * 56.20391 * 11 10 9 36 36 H 0.97000 * 119.99704 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.66660 * 318.71387 * 20 7 6 38 38 H 1.08998 * 110.66619 * 81.84163 * 20 7 6 39 39 H 1.09000 * 109.47055 * 90.00078 * 22 21 5 40 40 H 1.09000 * 109.47367 * 210.00127 * 22 21 5 41 41 H 1.09002 * 109.46736 * 330.00128 * 22 21 5 42 42 H 1.07999 * 119.99790 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0057 5 6 4.2717 -0.0002 0.0009 6 6 5.7788 -0.0002 0.0019 7 7 6.2692 -0.2413 -1.3617 8 6 5.9986 0.9208 -2.2355 9 6 7.1688 1.0192 -3.2316 10 6 8.1269 -0.1317 -2.8474 11 8 7.8923 -1.2795 -3.6657 12 6 9.5631 0.3134 -2.9497 13 1 9.8117 1.3605 -2.8584 14 6 10.5596 -0.6161 -3.1598 15 7 11.7951 -0.2188 -3.3724 16 14 10.1547 -2.4396 -3.1427 17 1 9.7320 -2.8656 -4.5011 18 1 11.3567 -3.2097 -2.7340 19 1 9.0533 -2.6930 -2.1794 20 6 7.7436 -0.4217 -1.3729 21 6 3.5806 -1.1970 0.0010 22 6 4.3340 -2.5023 0.0021 23 6 2.1981 -1.1971 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6583 2.1326 -0.0004 28 1 4.1205 2.1325 0.0102 29 1 6.1416 -0.7872 0.6630 30 1 6.1419 0.9656 0.3532 31 1 5.9428 1.8302 -1.6373 32 1 5.0631 0.7735 -2.7751 33 1 6.8092 0.8873 -4.2521 34 1 7.6723 1.9805 -3.1299 35 1 7.9629 -1.1071 -4.6146 36 1 12.4962 -0.8727 -3.5198 37 1 8.2237 0.2928 -0.7042 38 1 8.0082 -1.4433 -1.1001 39 1 4.5150 -2.8165 1.0300 40 1 3.7453 -3.2621 -0.5118 41 1 5.2868 -2.3721 -0.5111 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:04 Heat of formation + Delta-G solvation = -27.356115 kcal Electronic energy + Delta-G solvation = -21721.394747 eV Core-core repulsion = 18665.734728 eV Total energy + Delta-G solvation = -3055.660019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.79964 -38.39301 -35.47038 -33.57813 -32.28384 -32.06379 -30.38889 -28.23827 -27.56931 -26.93716 -24.62686 -23.57386 -21.95492 -20.67077 -19.87393 -19.42539 -17.42975 -15.96754 -15.86203 -15.34158 -15.03739 -14.81635 -14.37676 -14.21943 -13.79321 -13.54415 -13.12733 -13.09799 -12.94646 -12.64084 -12.43986 -12.32697 -11.93132 -11.84767 -11.61549 -11.51511 -11.27382 -11.18315 -10.87575 -10.68813 -10.49516 -10.40175 -10.09911 -9.96550 -9.13127 -8.67146 -8.53993 -8.44918 -8.25497 -7.81935 -6.13907 -4.25247 1.41145 1.49215 3.51856 3.57680 3.75420 3.77914 4.56641 4.63985 4.81513 4.83527 5.01069 5.04237 5.12857 5.20709 5.35151 5.43393 5.45301 5.49752 5.50641 5.64845 5.69806 5.78011 5.81135 5.83863 5.88692 5.99378 6.06410 6.22487 6.28069 6.32952 6.42336 6.55299 6.59187 6.62895 6.69875 6.83191 6.85164 7.10520 7.12261 7.34585 7.60016 7.66810 8.20856 8.74925 8.90510 9.49358 10.95140 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.004562 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.462164 B = 6136.767707 C = 6514.820493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.130 4.130 4 C -0.107 4.107 5 C -0.074 4.074 6 C 0.081 3.919 7 N -0.509 5.509 8 C 0.046 3.954 9 C -0.148 4.148 10 C 0.229 3.771 11 O -0.555 6.555 12 C -0.554 4.554 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.892 5.892 16 Si 0.950 3.050 17 H -0.293 1.293 18 H -0.328 1.328 19 H -0.266 1.266 20 C 0.047 3.953 21 C -0.055 4.055 22 C -0.122 4.122 23 C -0.126 4.126 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.366 0.634 36 H 0.265 0.735 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.949 0.175 6.831 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.126 4.126 5 C -0.075 4.075 6 C -0.047 4.047 7 N -0.233 5.233 8 C -0.082 4.082 9 C -0.187 4.187 10 C 0.188 3.812 11 O -0.362 6.362 12 C -0.591 4.591 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.528 5.528 16 Si 0.786 3.214 17 H -0.221 1.221 18 H -0.260 1.260 19 H -0.192 1.192 20 C -0.080 4.080 21 C -0.056 4.056 22 C -0.178 4.178 23 C -0.144 4.144 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.213 0.787 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.113 -0.588 7.200 20.433 hybrid contribution 0.375 0.299 -0.238 0.536 sum -18.738 -0.289 6.963 19.992 Atomic orbital electron populations 1.20751 0.91605 1.02489 1.01935 1.19828 0.95701 0.93261 1.00406 1.20890 0.94060 0.97229 1.02660 1.21021 0.94087 0.97444 1.00031 1.19697 0.95308 0.92542 0.99907 1.21206 0.90718 1.00372 0.92379 1.64840 1.14452 1.37103 1.06902 1.22744 0.98927 0.91265 0.95302 1.23102 0.95954 1.01386 0.98235 1.19951 0.93193 0.81303 0.86736 1.86143 1.92419 1.37308 1.20284 1.21336 0.88992 0.95987 1.52822 0.90554 1.25170 0.94540 1.00967 0.92593 1.69984 1.01142 1.35371 1.46295 0.85661 0.74467 0.82320 0.78987 1.22061 1.26027 1.19204 1.23648 0.84598 1.01421 0.98358 1.19745 0.93184 0.95212 0.97460 1.20899 1.01783 0.93428 1.01740 1.20882 0.93576 0.97295 1.02660 0.91526 0.91802 0.91780 0.86572 0.86506 0.90191 0.94269 0.94926 0.91709 0.92044 0.91289 0.78698 0.92554 0.92875 0.90210 0.91852 0.92077 0.89187 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.09 -1.06 5.88 -104.62 -0.62 -1.68 16 3 C -0.13 -1.55 9.70 -39.59 -0.38 -1.94 16 4 C -0.11 -1.41 9.47 -39.58 -0.37 -1.79 16 5 C -0.07 -1.07 4.94 -104.62 -0.52 -1.59 16 6 C 0.08 1.26 4.02 -4.97 -0.02 1.24 16 7 N -0.51 -9.28 4.60 -231.79 -1.07 -10.35 16 8 C 0.05 0.80 6.00 -2.76 -0.02 0.78 16 9 C -0.15 -2.90 6.23 -25.38 -0.16 -3.05 16 10 C 0.23 5.18 0.79 -89.83 -0.07 5.11 16 11 O -0.55 -12.54 8.50 -35.23 -0.30 -12.84 16 12 C -0.55 -14.99 8.83 -34.44 -0.30 -15.29 16 13 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 14 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 15 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 16 Si 0.95 23.95 24.88 -169.99 -4.23 19.72 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.33 -8.48 7.11 56.52 0.40 -8.08 16 19 H -0.27 -6.64 5.32 56.52 0.30 -6.34 16 20 C 0.05 0.99 5.44 -1.81 -0.01 0.98 16 21 C -0.06 -0.77 5.88 -104.62 -0.62 -1.39 16 22 C -0.12 -1.60 9.26 36.01 0.33 -1.27 16 23 C -0.13 -1.57 9.36 -39.58 -0.37 -1.94 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 29 H 0.08 1.20 7.25 -51.93 -0.38 0.82 16 30 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.03 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.12 8.00 -51.93 -0.42 0.70 16 34 H 0.07 1.37 7.70 -51.93 -0.40 0.97 16 35 H 0.37 7.32 8.92 45.56 0.41 7.73 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 38 H 0.08 1.78 6.47 -51.93 -0.34 1.45 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.09 1.39 6.35 -51.93 -0.33 1.06 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -30.67 329.58 -8.81 -39.48 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.10 Total: 5.59 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.86 Total: -20.47 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.29 Total: -36.45 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.30 Total: -12.84 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.23 Total: 19.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.67 -8.81 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.126 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds